Wall clock time and date at job start Tue Mar 31 2020 17:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99555 * 2 1 4 4 O 1.20818 * 120.00497 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99578 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.83287 * 320.83154 * 5 3 2 7 7 C 1.53024 * 109.61604 * 81.51184 * 5 3 2 8 8 H 1.09000 * 109.42257 * 176.39641 * 7 5 3 9 9 C 1.53003 * 109.71639 * 296.64099 * 7 5 3 10 10 C 1.52848 * 108.96533 * 56.60611 * 7 5 3 11 11 C 1.50594 * 110.49857 * 51.29986 * 10 7 5 12 12 C 1.38508 * 118.92700 * 159.47534 * 11 10 7 13 13 C 1.38118 * 120.30665 * 179.78841 * 12 11 10 14 14 C 1.38314 * 120.14900 * 0.02805 * 13 12 11 15 15 C 1.38028 * 119.90685 * 0.02562 * 14 13 12 16 16 C 1.38568 * 121.50211 * 339.38772 * 11 10 7 17 17 N 1.40173 * 120.82645 * 0.29418 * 16 11 10 18 18 C 1.34774 * 120.55885 * 166.69639 * 17 16 11 19 19 O 1.21289 * 119.99742 * 3.65249 * 18 17 16 20 20 C 1.50696 * 120.00217 * 183.65764 * 18 17 16 21 21 C 1.53000 * 109.46937 * 175.01370 * 20 18 17 22 22 C 1.50702 * 109.46917 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00291 * 0.02562 * 22 21 20 24 24 C 1.37882 * 119.99944 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99976 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99847 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47159 * 89.99954 * 26 24 22 28 28 H 1.48500 * 109.47023 * 210.00149 * 26 24 22 29 29 H 1.48497 * 109.47245 * 329.99737 * 26 24 22 30 30 H 1.08993 * 109.47209 * 299.99661 * 1 2 3 31 31 H 1.09003 * 109.47339 * 60.00018 * 1 2 3 32 32 H 1.08998 * 109.46878 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47348 * 179.59228 * 9 7 5 34 34 H 1.09000 * 109.47202 * 299.59297 * 9 7 5 35 35 H 1.09000 * 109.47324 * 59.59456 * 9 7 5 36 36 H 1.09003 * 109.27093 * 291.03803 * 10 7 5 37 37 H 1.08999 * 109.26923 * 171.56091 * 10 7 5 38 38 H 1.08000 * 119.84750 * 359.77277 * 12 11 10 39 39 H 1.07999 * 119.93054 * 180.02562 * 13 12 11 40 40 H 1.07994 * 120.04348 * 180.02562 * 14 13 12 41 41 H 1.07996 * 119.98592 * 180.02562 * 15 14 13 42 42 H 1.08997 * 109.47113 * 55.01691 * 20 18 17 43 43 H 1.08993 * 109.47162 * 295.01335 * 20 18 17 44 44 H 1.08998 * 109.47624 * 300.00091 * 21 20 18 45 45 H 1.08997 * 109.46957 * 60.00226 * 21 20 18 46 46 H 0.97004 * 120.00328 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9775 0.5003 0.6467 7 6 4.0899 1.0896 -1.4265 8 1 5.1731 1.2108 -1.4334 9 6 3.7273 -0.3082 -1.9319 10 6 3.4509 2.1430 -2.3311 11 6 3.6156 3.5174 -1.7381 12 6 3.5039 4.6221 -2.5661 13 6 3.6455 5.8960 -2.0515 14 6 3.9006 6.0765 -0.7041 15 6 4.0144 4.9809 0.1276 16 6 3.8731 3.6976 -0.3885 17 7 3.9955 2.5982 0.4724 18 6 4.5033 2.7513 1.7114 19 8 4.7973 3.8570 2.1139 20 6 4.7060 1.5487 2.5967 21 6 5.4041 1.9783 3.8885 22 6 5.6062 0.7758 4.7741 23 1 5.2707 -0.1976 4.4479 24 6 6.2205 0.9180 6.0003 25 7 6.3973 -0.1315 6.7728 26 14 6.8014 2.6014 6.5642 27 1 5.7101 3.2773 7.3107 28 1 7.9841 2.4462 7.4488 29 1 7.1721 3.4190 5.3813 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0957 -0.4333 -2.9501 34 1 4.1838 -1.0580 -1.2857 35 1 2.6441 -0.4293 -1.9200 36 1 2.3889 1.9244 -2.4432 37 1 3.9290 2.1140 -3.3102 38 1 3.3055 4.4868 -3.6190 39 1 3.5569 6.7531 -2.7025 40 1 4.0105 7.0734 -0.3035 41 1 4.2131 5.1204 1.1800 42 1 5.3224 0.8150 2.0773 43 1 3.7389 1.1066 2.8360 44 1 6.3713 2.4204 3.6493 45 1 4.7877 2.7120 4.4079 46 1 6.8291 -0.0314 7.6357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537632516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:32 Heat of formation + Delta-G solvation = -102.074868 kcal Electronic energy + Delta-G solvation = -29695.267766 eV Core-core repulsion = 25742.551034 eV Total energy + Delta-G solvation = -3952.716732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.88008 -41.23147 -39.80827 -38.16024 -37.38140 -35.70543 -35.32811 -33.56062 -32.55059 -31.25323 -29.41709 -28.24369 -27.78635 -26.97191 -24.64348 -23.24973 -23.04757 -22.62451 -21.26390 -20.18839 -19.23346 -18.82114 -18.55436 -17.86497 -17.72632 -17.31906 -16.82988 -16.54071 -16.29776 -15.94438 -15.61508 -15.17429 -15.06470 -14.78703 -14.61594 -14.56798 -14.27006 -14.15264 -14.10855 -13.58810 -13.31149 -13.28040 -13.04147 -12.95662 -12.93355 -12.54992 -12.36057 -12.23516 -12.10941 -12.03492 -11.84149 -11.82011 -11.70390 -11.67785 -11.43121 -11.19406 -10.79409 -10.42116 -9.66077 -8.95680 -8.32526 -6.35476 0.30596 0.45986 0.88901 1.15272 1.31860 1.34510 1.47545 1.48328 1.88547 2.33325 2.86199 3.03312 3.20683 3.34358 3.55692 3.64232 3.74320 3.93085 4.10860 4.17164 4.23635 4.27839 4.28209 4.30020 4.31766 4.41152 4.51751 4.54679 4.66198 4.69550 4.75016 4.81813 4.88881 5.03024 5.10496 5.16977 5.22827 5.25467 5.27753 5.34115 5.43959 5.45781 5.55203 5.57204 5.64894 6.04666 6.17479 6.21553 6.57249 6.69674 6.87270 7.29788 8.82761 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.004253 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.523493 B = 6582.031513 C = 8067.230083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.456 3.544 4 O -0.520 6.520 5 C 0.133 3.867 6 H 0.153 0.847 7 C -0.090 4.090 8 H 0.106 0.894 9 C -0.145 4.145 10 C -0.073 4.073 11 C -0.120 4.120 12 C -0.101 4.101 13 C -0.142 4.142 14 C -0.115 4.115 15 C -0.192 4.192 16 C 0.144 3.856 17 N -0.541 5.541 18 C 0.514 3.486 19 O -0.539 6.539 20 C -0.116 4.116 21 C 0.007 3.993 22 C -0.527 4.527 23 H 0.056 0.944 24 C 0.019 3.981 25 N -0.940 5.940 26 Si 0.932 3.068 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.261 1.261 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.016 0.984 45 H 0.008 0.992 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 1.260 -25.641 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.298 3.702 4 O -0.408 6.408 5 C 0.028 3.972 6 H 0.171 0.829 7 C -0.109 4.109 8 H 0.125 0.875 9 C -0.202 4.202 10 C -0.110 4.110 11 C -0.123 4.123 12 C -0.119 4.119 13 C -0.160 4.160 14 C -0.134 4.134 15 C -0.211 4.211 16 C 0.051 3.949 17 N -0.264 5.264 18 C 0.306 3.694 19 O -0.416 6.416 20 C -0.155 4.155 21 C -0.031 4.031 22 C -0.565 4.565 23 H 0.074 0.926 24 C -0.179 4.179 25 N -0.580 5.580 26 Si 0.757 3.243 27 H -0.198 1.198 28 H -0.202 1.202 29 H -0.185 1.185 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.136 0.864 43 H 0.118 0.882 44 H 0.035 0.965 45 H 0.026 0.974 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.402 2.008 -25.181 26.954 hybrid contribution -0.076 0.957 1.293 1.610 sum -9.478 2.965 -23.888 25.870 Atomic orbital electron populations 1.23588 0.74668 1.05985 1.02331 1.86536 1.24920 1.31442 1.83335 1.24052 0.92178 0.81985 0.72024 1.90707 1.67292 1.37438 1.45350 1.21468 0.87793 0.85637 1.02280 0.82934 1.21474 1.02242 0.98388 0.88749 0.87543 1.21884 1.02665 0.92479 1.03172 1.20612 1.01526 0.88718 1.00142 1.19755 1.04088 0.97851 0.90569 1.21236 0.99008 0.91142 1.00498 1.21402 1.01270 0.98298 0.95073 1.21322 0.99217 0.98416 0.94437 1.22458 1.03315 0.91894 1.03446 1.17941 1.00462 0.86391 0.90073 1.45592 1.59231 1.08013 1.13596 1.21679 0.74979 0.91920 0.80793 1.90405 1.50719 1.27596 1.72928 1.21652 1.03688 0.94606 0.95566 1.19232 0.95741 0.95639 0.92529 1.21334 1.38440 0.94867 1.01892 0.92604 1.25706 0.95594 0.99818 0.96771 1.70001 1.44892 1.31361 1.11736 0.85924 0.78544 0.80994 0.78843 1.19755 1.20238 1.18493 0.92975 0.91407 0.84442 0.89160 0.90471 0.91891 0.90952 0.86405 0.82554 0.83248 0.84878 0.83762 0.86357 0.88244 0.96545 0.97372 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.15 9.07 -51.41 -0.47 -7.61 16 3 C 0.46 11.77 5.45 71.24 0.39 12.16 16 4 O -0.52 -17.00 15.04 21.99 0.33 -16.67 16 5 C 0.13 3.19 2.50 44.17 0.11 3.30 16 6 H 0.15 3.21 6.05 -2.39 -0.01 3.20 16 7 C -0.09 -1.51 2.65 -10.84 -0.03 -1.54 16 8 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 9 C -0.14 -1.59 8.87 71.98 0.64 -0.96 16 10 C -0.07 -1.27 4.55 29.76 0.14 -1.13 16 11 C -0.12 -2.99 5.40 -19.75 -0.11 -3.10 16 12 C -0.10 -2.11 9.66 22.31 0.22 -1.89 16 13 C -0.14 -3.14 10.04 22.26 0.22 -2.92 16 14 C -0.12 -3.24 10.05 22.24 0.22 -3.01 16 15 C -0.19 -6.76 8.97 22.41 0.20 -6.56 16 16 C 0.14 4.67 5.42 38.08 0.21 4.88 16 17 N -0.54 -17.36 2.45 -611.64 -1.50 -18.86 16 18 C 0.51 19.81 7.61 87.66 0.67 20.47 16 19 O -0.54 -24.40 12.49 -3.06 -0.04 -24.44 16 20 C -0.12 -4.41 4.07 29.85 0.12 -4.29 16 21 C 0.01 0.32 3.34 29.85 0.10 0.42 16 22 C -0.53 -29.75 9.66 25.60 0.25 -29.50 16 23 H 0.06 3.28 7.99 -2.91 -0.02 3.26 16 24 C 0.02 1.13 5.47 84.66 0.46 1.60 16 25 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 26 Si 0.93 46.32 27.47 68.60 1.88 48.20 16 27 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 29 H -0.26 -12.84 6.54 99.48 0.65 -12.18 16 30 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 32 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.75 6.35 -2.39 -0.02 0.74 16 36 H 0.07 1.30 7.34 -2.39 -0.02 1.29 16 37 H 0.12 1.31 8.12 -2.39 -0.02 1.29 16 38 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 41 H 0.15 5.99 4.71 -46.29 -0.22 5.77 16 42 H 0.12 3.84 7.43 -2.39 -0.02 3.82 16 43 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 44 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 45 H 0.01 0.41 7.47 -2.39 -0.02 0.39 16 46 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -78.40 367.60 6.24 -72.15 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.73 Total: 15.25 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 5.00 Total: -10.45 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -1.20 Total: -76.44 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.17 Total: -48.72 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.20 kcal Total: -78.40 6.24 -72.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537632516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.922 kcal (2) G-P(sol) polarization free energy of solvation -78.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds