Wall clock time and date at job start Tue Mar 31 2020 16:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 O 1.42900 * 109.46585 * 119.99408 * 2 1 3 5 5 C 1.42902 * 113.99825 * 150.00047 * 4 2 1 6 6 C 1.53000 * 109.47210 * 180.02562 * 5 4 2 7 7 O 1.42899 * 109.47075 * 64.99910 * 6 5 4 8 8 C 1.42902 * 113.99828 * 180.02562 * 7 6 5 9 9 C 1.53070 * 109.44395 * 89.79670 * 8 7 6 10 10 C 1.53195 * 109.29524 * 181.23525 * 9 8 7 11 11 N 1.46919 * 108.89273 * 305.57804 * 10 9 8 12 12 C 1.34783 * 120.63144 * 233.55709 * 11 10 9 13 13 O 1.21274 * 119.99655 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99922 * 179.97438 * 12 11 10 15 15 S 1.81002 * 109.46922 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99932 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99685 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47016 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46898 * 120.00268 * 20 18 16 23 23 H 1.48500 * 109.47178 * 240.00180 * 20 18 16 24 24 C 1.46928 * 118.73982 * 53.53793 * 11 10 9 25 25 C 1.53039 * 109.45918 * 210.00158 * 8 7 6 26 26 H 1.08998 * 109.47183 * 300.00977 * 1 2 3 27 27 H 1.09003 * 109.46523 * 60.00718 * 1 2 3 28 28 H 1.08993 * 109.47180 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47183 * 239.99023 * 2 1 3 30 30 H 1.08995 * 109.47428 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46837 * 299.99698 * 3 2 1 32 32 H 1.08995 * 109.47496 * 59.98889 * 3 2 1 33 33 H 1.09000 * 109.47117 * 59.99966 * 5 4 2 34 34 H 1.08999 * 109.47313 * 299.99897 * 5 4 2 35 35 H 1.09000 * 109.47112 * 304.99689 * 6 5 4 36 36 H 1.09006 * 109.47266 * 185.00014 * 6 5 4 37 37 H 1.09007 * 109.45850 * 329.96828 * 8 7 6 38 38 H 1.08997 * 109.38860 * 61.35712 * 9 8 7 39 39 H 1.09003 * 109.62046 * 301.25055 * 9 8 7 40 40 H 1.09002 * 109.58720 * 185.71834 * 10 9 8 41 41 H 1.08996 * 109.58651 * 65.43731 * 10 9 8 42 42 H 1.09001 * 109.47385 * 300.00399 * 14 12 11 43 43 H 1.08997 * 109.47457 * 60.00250 * 14 12 11 44 44 H 0.96997 * 119.99912 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.58787 * 66.18123 * 24 11 10 46 46 H 1.09007 * 109.58600 * 186.46436 * 24 11 10 47 47 H 1.09002 * 109.49876 * 58.67502 * 25 8 7 48 48 H 1.09005 * 109.52615 * 298.59752 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2659 -1.3245 0.9889 6 6 3.6753 -2.0090 2.2945 7 8 2.7487 -3.0545 2.5950 8 6 3.0412 -3.7612 3.8021 9 6 2.3376 -3.0767 4.9766 10 6 2.6784 -3.8187 6.2729 11 7 2.3428 -5.2397 6.1100 12 6 1.5417 -5.8622 6.9974 13 8 1.0903 -5.2488 7.9411 14 6 1.2063 -7.3202 6.8162 15 16 0.1196 -7.8606 8.1591 16 6 -0.1049 -9.5496 7.7100 17 1 0.3751 -9.9417 6.8256 18 6 -0.8987 -10.3762 8.4931 19 7 -1.4841 -9.8983 9.5708 20 14 -1.1373 -12.1667 8.0167 21 1 -0.3787 -12.4532 6.7727 22 1 -0.6415 -13.0402 9.1105 23 1 -2.5808 -12.4301 7.7886 24 6 2.8966 -5.9692 4.9611 25 6 2.5507 -5.2056 3.6790 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8898 33 1 4.0199 -0.5874 0.7127 34 1 3.1809 -2.0707 0.1990 35 1 3.6741 -1.2786 3.1036 36 1 4.6751 -2.4296 2.1863 37 1 4.1177 -3.7567 3.9737 38 1 1.2597 -3.1006 4.8164 39 1 2.6721 -2.0420 5.0510 40 1 2.1011 -3.3990 7.0968 41 1 3.7429 -3.7164 6.4834 42 1 0.7004 -7.4607 5.8610 43 1 2.1236 -7.9088 6.8314 44 1 -2.0392 -10.4759 10.1178 45 1 3.9794 -6.0423 5.0621 46 1 2.4650 -6.9694 4.9209 47 1 3.0367 -5.6836 2.8285 48 1 1.4706 -5.2122 3.5317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570284365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:46 Heat of formation + Delta-G solvation = -140.155877 kcal Electronic energy + Delta-G solvation = -25997.015218 eV Core-core repulsion = 22178.091121 eV Total energy + Delta-G solvation = -3818.924097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.06275 -38.98960 -38.15961 -36.23593 -33.39298 -32.41585 -32.14690 -31.43708 -29.54754 -28.76964 -27.58892 -25.50627 -24.62122 -23.43164 -22.76205 -21.69161 -21.08285 -19.08434 -17.74736 -17.52668 -17.11875 -16.59155 -15.68939 -15.62477 -15.55713 -15.31920 -15.06736 -14.79294 -14.56250 -14.08880 -13.91391 -13.72743 -13.38914 -13.16625 -12.99493 -12.79018 -12.77058 -12.62611 -12.52555 -12.33236 -12.03856 -11.88350 -11.73400 -11.37221 -11.29091 -11.13361 -11.06096 -11.03140 -10.99672 -10.73802 -10.72825 -9.92955 -9.79344 -9.69724 -9.31634 -9.06119 -8.54507 -8.20182 -6.48374 -6.20314 -3.90696 2.94192 3.04435 3.22567 3.26228 3.27555 3.31992 3.36930 3.61528 4.21358 4.43700 4.52272 4.60027 4.61182 4.73072 4.79764 4.80065 4.85309 4.91222 4.99178 5.01415 5.06214 5.14776 5.15696 5.18756 5.24485 5.34588 5.38598 5.44626 5.47252 5.48407 5.51284 5.60314 5.69754 5.71341 5.78259 5.86794 5.88872 5.96104 5.98022 6.13017 6.14027 6.65357 6.88464 7.02405 7.56470 7.61421 8.36794 8.57889 9.25062 10.87169 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020130 B = 0.001963 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.596765 B =14256.934918 C =14604.935103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.175 4.175 4 O -0.372 6.372 5 C 0.065 3.935 6 C 0.063 3.937 7 O -0.372 6.372 8 C 0.093 3.907 9 C -0.154 4.154 10 C 0.116 3.884 11 N -0.622 5.622 12 C 0.536 3.464 13 O -0.516 6.516 14 C -0.151 4.151 15 S -0.062 6.062 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.112 3.888 25 C -0.131 4.131 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.187 18.863 -21.021 31.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.233 4.233 4 O -0.292 6.292 5 C -0.012 4.012 6 C -0.013 4.013 7 O -0.291 6.291 8 C 0.035 3.965 9 C -0.192 4.192 10 C -0.007 4.007 11 N -0.359 5.359 12 C 0.324 3.676 13 O -0.391 6.391 14 C -0.302 4.302 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.012 4.012 25 C -0.170 4.170 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.099 0.901 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.132 19.688 -19.392 30.180 hybrid contribution 0.826 -1.700 -1.593 2.472 sum 12.958 17.987 -20.985 30.526 Atomic orbital electron populations 1.21856 0.93470 1.03005 1.02425 1.22086 0.95297 0.92211 0.88203 1.22313 1.01291 0.96998 1.02690 1.88036 1.36242 1.69729 1.35165 1.22541 0.86474 0.95097 0.97106 1.22534 0.92146 0.90053 0.96607 1.88005 1.51657 1.47847 1.41596 1.22080 0.98155 0.91843 0.84406 1.22420 1.02799 0.99450 0.94560 1.21458 1.00423 0.80857 0.97997 1.48142 1.50519 1.10553 1.26641 1.20337 0.76931 0.88947 0.81390 1.90687 1.51157 1.66912 1.30304 1.23559 1.05311 0.94243 1.07046 1.85416 1.58602 1.10405 1.29066 1.22903 1.35788 0.95296 1.14255 0.90876 1.24996 0.94793 0.99295 0.94538 1.70030 1.29882 1.36183 1.14169 0.86117 0.78109 0.82755 0.78513 1.19610 1.20586 1.20575 1.21689 0.98848 0.96437 0.84209 1.21996 1.03414 0.93610 0.97945 0.91720 0.91396 0.91760 0.92375 0.92680 0.91682 0.91689 0.92137 0.92510 0.92479 0.91964 0.92224 0.90406 0.90780 0.88538 0.91931 0.89190 0.89245 0.92249 0.91389 0.88573 0.90098 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.56 37.16 0.36 -0.72 16 2 C 0.08 0.59 3.34 -26.73 -0.09 0.50 16 3 C -0.18 -1.04 9.53 37.16 0.35 -0.69 16 4 O -0.37 -3.70 9.95 -40.08 -0.40 -4.10 16 5 C 0.06 0.49 6.13 37.16 0.23 0.72 16 6 C 0.06 0.51 6.13 37.16 0.23 0.73 16 7 O -0.37 -4.03 9.95 -40.08 -0.40 -4.43 16 8 C 0.09 0.92 2.57 -26.67 -0.07 0.85 16 9 C -0.15 -1.69 5.70 -26.59 -0.15 -1.84 16 10 C 0.12 1.45 6.43 -3.71 -0.02 1.42 16 11 N -0.62 -9.06 2.97 -172.77 -0.51 -9.57 16 12 C 0.54 10.43 7.72 -10.98 -0.08 10.34 16 13 O -0.52 -12.05 15.27 5.56 0.08 -11.97 16 14 C -0.15 -3.11 4.50 36.00 0.16 -2.95 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 16 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 20 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.11 1.23 6.34 -3.71 -0.02 1.21 16 25 C -0.13 -1.33 5.73 -26.61 -0.15 -1.48 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.37 7.79 -51.93 -0.40 -0.04 16 30 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 34 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.06 0.45 7.84 -51.93 -0.41 0.05 16 36 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 37 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 40 H 0.10 1.40 7.00 -51.93 -0.36 1.04 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.72 7.69 -51.91 -0.40 1.32 16 43 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.08 5.93 -51.92 -0.31 0.77 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -35.38 400.76 -9.29 -44.68 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.54 Total: -2.74 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.93 Total: -4.90 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.22 Total: -35.15 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.71 Total: -20.50 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.38 -9.29 -44.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570284365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.478 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds