Wall clock time and date at job start Tue Mar 31 2020 16:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 O 1.42900 * 109.46585 * 119.99408 * 2 1 3 5 5 C 1.42902 * 113.99825 * 150.00047 * 4 2 1 6 6 C 1.53000 * 109.47210 * 180.02562 * 5 4 2 7 7 O 1.42899 * 109.47075 * 64.99910 * 6 5 4 8 8 C 1.42902 * 113.99828 * 180.02562 * 7 6 5 9 9 C 1.53070 * 109.44395 * 89.79670 * 8 7 6 10 10 C 1.53195 * 109.29524 * 181.23525 * 9 8 7 11 11 N 1.46919 * 108.89273 * 305.57804 * 10 9 8 12 12 C 1.34783 * 120.63144 * 233.55709 * 11 10 9 13 13 O 1.21274 * 119.99655 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99922 * 179.97438 * 12 11 10 15 15 S 1.81002 * 109.46922 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99932 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99685 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47016 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46898 * 120.00268 * 20 18 16 23 23 H 1.48500 * 109.47178 * 240.00180 * 20 18 16 24 24 C 1.46928 * 118.73982 * 53.53793 * 11 10 9 25 25 C 1.53039 * 109.45918 * 210.00158 * 8 7 6 26 26 H 1.08998 * 109.47183 * 300.00977 * 1 2 3 27 27 H 1.09003 * 109.46523 * 60.00718 * 1 2 3 28 28 H 1.08993 * 109.47180 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47183 * 239.99023 * 2 1 3 30 30 H 1.08995 * 109.47428 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46837 * 299.99698 * 3 2 1 32 32 H 1.08995 * 109.47496 * 59.98889 * 3 2 1 33 33 H 1.09000 * 109.47117 * 59.99966 * 5 4 2 34 34 H 1.08999 * 109.47313 * 299.99897 * 5 4 2 35 35 H 1.09000 * 109.47112 * 304.99689 * 6 5 4 36 36 H 1.09006 * 109.47266 * 185.00014 * 6 5 4 37 37 H 1.09007 * 109.45850 * 329.96828 * 8 7 6 38 38 H 1.08997 * 109.38860 * 61.35712 * 9 8 7 39 39 H 1.09003 * 109.62046 * 301.25055 * 9 8 7 40 40 H 1.09002 * 109.58720 * 185.71834 * 10 9 8 41 41 H 1.08996 * 109.58651 * 65.43731 * 10 9 8 42 42 H 1.09001 * 109.47385 * 300.00399 * 14 12 11 43 43 H 1.08997 * 109.47457 * 60.00250 * 14 12 11 44 44 H 0.96997 * 119.99912 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.58787 * 66.18123 * 24 11 10 46 46 H 1.09007 * 109.58600 * 186.46436 * 24 11 10 47 47 H 1.09002 * 109.49876 * 58.67502 * 25 8 7 48 48 H 1.09005 * 109.52615 * 298.59752 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2659 -1.3245 0.9889 6 6 3.6753 -2.0090 2.2945 7 8 2.7487 -3.0545 2.5950 8 6 3.0412 -3.7612 3.8021 9 6 2.3376 -3.0767 4.9766 10 6 2.6784 -3.8187 6.2729 11 7 2.3428 -5.2397 6.1100 12 6 1.5417 -5.8622 6.9974 13 8 1.0903 -5.2488 7.9411 14 6 1.2063 -7.3202 6.8162 15 16 0.1196 -7.8606 8.1591 16 6 -0.1049 -9.5496 7.7100 17 1 0.3751 -9.9417 6.8256 18 6 -0.8987 -10.3762 8.4931 19 7 -1.4841 -9.8983 9.5708 20 14 -1.1373 -12.1667 8.0167 21 1 -0.3787 -12.4532 6.7727 22 1 -0.6415 -13.0402 9.1105 23 1 -2.5808 -12.4301 7.7886 24 6 2.8966 -5.9692 4.9611 25 6 2.5507 -5.2056 3.6790 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8898 33 1 4.0199 -0.5874 0.7127 34 1 3.1809 -2.0707 0.1990 35 1 3.6741 -1.2786 3.1036 36 1 4.6751 -2.4296 2.1863 37 1 4.1177 -3.7567 3.9737 38 1 1.2597 -3.1006 4.8164 39 1 2.6721 -2.0420 5.0510 40 1 2.1011 -3.3990 7.0968 41 1 3.7429 -3.7164 6.4834 42 1 0.7004 -7.4607 5.8610 43 1 2.1236 -7.9088 6.8314 44 1 -2.0392 -10.4759 10.1178 45 1 3.9794 -6.0423 5.0621 46 1 2.4650 -6.9694 4.9209 47 1 3.0367 -5.6836 2.8285 48 1 1.4706 -5.2122 3.5317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570284365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:45 Heat of formation + Delta-G solvation = -163.363213 kcal Electronic energy + Delta-G solvation = -25998.021564 eV Core-core repulsion = 22178.091121 eV Total energy + Delta-G solvation = -3819.930443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24944 -39.77817 -39.02449 -37.32975 -34.58599 -34.05345 -33.20522 -32.37611 -30.51077 -29.94821 -28.09884 -27.68234 -25.64243 -24.36383 -23.39608 -22.24585 -22.12006 -20.41568 -19.54195 -18.43085 -17.98617 -17.61189 -16.98052 -16.87150 -16.69795 -16.29475 -16.22080 -15.92928 -15.72659 -15.22904 -15.01359 -14.77812 -14.48376 -14.29197 -14.20557 -13.69781 -13.60842 -13.51123 -13.31826 -13.20965 -13.15207 -13.03929 -12.91431 -12.80478 -12.58870 -12.37355 -12.26703 -11.99288 -11.86904 -11.69356 -11.59088 -11.53464 -11.15878 -10.91504 -10.51287 -10.41238 -10.25536 -9.75584 -8.67744 -8.34630 -6.13180 1.25328 1.41787 1.45793 1.54795 1.57714 2.08480 2.27213 2.64727 2.75726 2.99584 3.24642 3.60942 3.73631 3.86753 3.93210 4.02874 4.08495 4.09498 4.23148 4.24771 4.26944 4.27650 4.30138 4.35335 4.42389 4.49755 4.52663 4.57278 4.68844 4.73792 4.77760 4.81460 4.82729 4.90228 4.93972 4.97184 4.97274 5.12370 5.25549 5.28395 5.32278 5.42199 5.54366 6.20068 6.25542 6.28243 6.41121 7.06555 7.11926 8.74948 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020130 B = 0.001963 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.596765 B =14256.934918 C =14604.935103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 C -0.171 4.171 4 O -0.403 6.403 5 C 0.060 3.940 6 C 0.057 3.943 7 O -0.394 6.394 8 C 0.095 3.905 9 C -0.146 4.146 10 C 0.114 3.886 11 N -0.610 5.610 12 C 0.532 3.468 13 O -0.568 6.568 14 C -0.124 4.124 15 S -0.155 6.155 16 C -0.544 4.544 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.255 1.255 22 H -0.273 1.273 23 H -0.275 1.275 24 C 0.105 3.895 25 C -0.126 4.126 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.271 0.729 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.788 18.376 -23.836 33.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 C -0.228 4.228 4 O -0.324 6.324 5 C -0.016 4.016 6 C -0.019 4.019 7 O -0.314 6.314 8 C 0.038 3.962 9 C -0.184 4.184 10 C -0.008 4.008 11 N -0.344 5.344 12 C 0.320 3.680 13 O -0.446 6.446 14 C -0.275 4.275 15 S 0.073 5.927 16 C -0.692 4.692 17 H 0.102 0.898 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.017 4.017 25 C -0.165 4.165 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.121 0.879 46 H 0.113 0.887 47 H 0.124 0.876 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.775 19.223 -22.265 32.918 hybrid contribution 0.093 -1.408 -0.824 1.634 sum 14.868 17.815 -23.089 32.734 Atomic orbital electron populations 1.21885 0.93840 1.02227 1.02862 1.22251 0.95163 0.93044 0.87972 1.22270 1.01701 0.95965 1.02873 1.88000 1.37523 1.70273 1.36574 1.22710 0.86266 0.95610 0.97053 1.22775 0.92906 0.89529 0.96706 1.87989 1.53105 1.48660 1.41614 1.22073 0.99425 0.91150 0.83562 1.22341 1.01145 1.00416 0.94530 1.21616 1.01779 0.79424 0.97978 1.48172 1.48548 1.11489 1.26196 1.20166 0.77558 0.88465 0.81784 1.90669 1.53560 1.67656 1.32755 1.23376 1.04430 0.95439 1.04231 1.85618 1.61534 1.11747 1.33847 1.23230 1.36057 0.95225 1.14673 0.89782 1.26155 0.94152 1.04697 0.94253 1.70197 1.30793 1.38255 1.15595 0.84886 0.78276 0.75877 0.78780 1.17863 1.19873 1.20031 1.22022 1.00652 0.96003 0.82980 1.21947 1.02142 0.94201 0.98162 0.92877 0.89376 0.93105 0.91256 0.91967 0.90186 0.92797 0.89820 0.92475 0.92651 0.89185 0.89283 0.93480 0.89229 0.91228 0.88657 0.87613 0.87030 0.92007 0.87890 0.88687 0.87634 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.56 71.98 0.69 -1.43 16 2 C 0.07 1.00 3.34 30.60 0.10 1.11 16 3 C -0.17 -1.77 9.53 71.98 0.69 -1.08 16 4 O -0.40 -7.68 9.95 -144.34 -1.44 -9.12 16 5 C 0.06 0.78 6.13 71.98 0.44 1.22 16 6 C 0.06 0.76 6.13 71.98 0.44 1.20 16 7 O -0.39 -7.71 9.95 -144.34 -1.44 -9.15 16 8 C 0.10 1.62 2.57 30.63 0.08 1.70 16 9 C -0.15 -3.04 5.70 30.68 0.17 -2.87 16 10 C 0.11 2.73 6.43 86.36 0.56 3.28 16 11 N -0.61 -16.99 2.97 -818.91 -2.44 -19.42 16 12 C 0.53 20.89 7.72 87.66 0.68 21.57 16 13 O -0.57 -27.65 15.27 -3.01 -0.05 -27.69 16 14 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 15 S -0.15 -8.79 20.57 -56.49 -1.16 -9.95 16 16 C -0.54 -31.37 9.50 67.95 0.65 -30.72 16 17 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 18 C 0.01 0.69 5.49 84.86 0.47 1.16 16 19 N -0.91 -56.63 13.22 21.65 0.29 -56.35 16 20 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 C 0.11 2.01 6.34 86.36 0.55 2.56 16 25 C -0.13 -2.23 5.73 30.67 0.18 -2.06 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.77 7.79 -2.39 -0.02 0.75 16 30 H 0.06 0.55 7.87 -2.39 -0.02 0.53 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.68 7.87 -2.39 -0.02 0.66 16 34 H 0.06 0.72 8.08 -2.39 -0.02 0.70 16 35 H 0.06 0.75 7.84 -2.39 -0.02 0.73 16 36 H 0.09 0.69 8.09 -2.38 -0.02 0.67 16 37 H 0.09 1.03 7.79 -2.38 -0.02 1.01 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.59 7.84 -2.39 -0.02 1.57 16 40 H 0.07 2.07 7.00 -2.39 -0.02 2.05 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.11 3.97 7.69 -2.39 -0.02 3.95 16 43 H 0.11 4.05 7.94 -2.40 -0.02 4.04 16 44 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.09 1.86 5.93 -2.38 -0.01 1.85 16 47 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -80.94 400.76 2.71 -78.23 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.91 Total: 16.66 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 6.00 Total: -9.12 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -2.15 Total: -75.77 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -2.92 Total: -45.96 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -80.94 2.71 -78.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570284365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.133 kcal (2) G-P(sol) polarization free energy of solvation -80.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds