Wall clock time and date at job start Tue Mar 31 2020 17:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.45055 * 2 1 4 4 C 1.53039 * 109.46168 * 240.03290 * 2 1 3 5 5 C 1.53191 * 109.31051 * 301.34291 * 4 2 1 6 6 N 1.46930 * 108.78107 * 305.36535 * 5 4 2 7 7 C 1.34775 * 120.63407 * 233.59034 * 6 5 4 8 8 O 1.21280 * 119.99863 * 180.02562 * 7 6 5 9 9 C 1.50695 * 119.99961 * 0.02562 * 7 6 5 10 10 H 1.09002 * 109.47219 * 299.99931 * 9 7 6 11 11 C 1.50703 * 109.47354 * 59.99955 * 9 7 6 12 12 H 1.08001 * 119.99747 * 24.90376 * 11 9 7 13 13 C 1.37877 * 120.00294 * 204.90743 * 11 9 7 14 14 N 1.31516 * 120.00074 * 5.57058 * 13 11 9 15 15 Si 1.86801 * 119.99894 * 185.57353 * 13 11 9 16 16 H 1.48495 * 109.47282 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46821 * 120.00043 * 15 13 11 18 18 H 1.48505 * 109.47127 * 239.99889 * 15 13 11 19 19 C 1.50699 * 109.47113 * 180.02562 * 9 7 6 20 20 C 1.38227 * 119.99905 * 293.19724 * 19 9 7 21 21 C 1.38243 * 119.99762 * 179.79039 * 20 19 9 22 22 C 1.38224 * 119.99953 * 0.46138 * 21 20 19 23 23 C 1.38239 * 119.99993 * 359.77236 * 22 21 20 24 24 C 1.38230 * 120.00217 * 0.02562 * 23 22 21 25 25 C 1.46930 * 118.73501 * 53.60360 * 6 5 4 26 26 C 1.53040 * 109.45702 * 119.96268 * 2 1 3 27 27 H 1.09010 * 109.52289 * 178.62458 * 26 2 1 28 28 C 1.50701 * 109.50175 * 298.70182 * 26 2 1 29 29 O 1.20824 * 119.99671 * 359.84756 * 28 26 2 30 30 O 1.34221 * 120.00307 * 179.83779 * 28 26 2 31 31 H 1.09000 * 109.47286 * 300.03478 * 1 2 3 32 32 H 1.09003 * 109.47237 * 60.03968 * 1 2 3 33 33 H 1.09005 * 109.47102 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.49667 * 181.39654 * 4 2 1 35 35 H 1.08993 * 109.52566 * 61.31120 * 4 2 1 36 36 H 1.09002 * 109.58706 * 185.57827 * 5 4 2 37 37 H 1.09001 * 109.59185 * 65.15327 * 5 4 2 38 38 H 0.96993 * 120.00043 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.00700 * 359.97438 * 20 19 9 40 40 H 1.08004 * 119.99660 * 180.25199 * 21 20 19 41 41 H 1.08006 * 120.00191 * 179.79231 * 22 21 20 42 42 H 1.08000 * 119.99733 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.00446 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.58818 * 186.60390 * 25 6 5 45 45 H 1.09008 * 109.70024 * 66.25507 * 25 6 5 46 46 H 0.96703 * 117.00294 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 1.4996 -2.1542 -1.2641 6 7 1.8625 -2.8089 0.0002 7 6 2.5157 -3.9878 0.0002 8 8 2.8092 -4.5184 1.0506 9 6 2.8812 -4.6468 -1.3048 10 1 1.9753 -4.8477 -1.8767 11 6 3.7814 -3.7320 -2.0947 12 1 4.3802 -2.9916 -1.5851 13 6 3.8404 -3.8401 -3.4679 14 7 3.0324 -4.6645 -4.0980 15 14 5.0683 -2.8157 -4.4335 16 1 5.8553 -1.9737 -3.4971 17 1 5.9841 -3.7149 -5.1805 18 1 4.3412 -1.9436 -5.3907 19 6 3.5986 -5.9431 -1.0293 20 6 4.8483 -5.9295 -0.4388 21 6 5.5045 -7.1189 -0.1822 22 6 4.9150 -8.3213 -0.5248 23 6 3.6673 -8.3347 -1.1198 24 6 3.0093 -7.1456 -1.3726 25 6 1.4996 -2.1541 1.2644 26 6 2.0398 -0.7207 1.2501 27 1 3.1296 -0.7427 1.2390 28 6 1.5641 0.0084 2.4803 29 8 0.8890 1.0042 2.3690 30 8 1.8902 -0.4486 3.6994 31 1 -0.3634 0.5144 0.8897 32 1 -0.3634 0.5132 -0.8904 33 1 -0.3633 -1.0277 0.0005 34 1 3.1296 -0.7428 -1.2382 35 1 1.6963 -0.1937 -2.1401 36 1 1.9383 -2.7018 -2.0983 37 1 0.4147 -2.1348 -1.3672 38 1 3.0737 -4.7403 -5.0641 39 1 5.3109 -4.9898 -0.1752 40 1 6.4792 -7.1084 0.2829 41 1 5.4291 -9.2504 -0.3274 42 1 3.2066 -9.2742 -1.3871 43 1 2.0347 -7.1560 -1.8378 44 1 1.9381 -2.7016 2.0986 45 1 0.4148 -2.1347 1.3700 46 1 1.5616 0.0524 4.4585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573725806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:33 Heat of formation + Delta-G solvation = -107.445080 kcal Electronic energy + Delta-G solvation = -29783.839827 eV Core-core repulsion = 25830.890225 eV Total energy + Delta-G solvation = -3952.949602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85515 -39.48471 -38.17869 -37.04591 -36.08056 -33.96113 -32.90895 -31.40342 -30.94610 -29.92429 -27.73790 -27.48796 -24.89574 -24.13080 -23.47127 -21.79181 -21.57698 -20.77341 -19.25126 -18.13371 -17.76603 -16.93049 -16.63974 -16.18074 -15.90137 -15.67270 -15.15441 -14.63141 -14.44520 -14.25235 -14.11719 -14.02512 -13.70210 -13.38618 -12.93238 -12.72350 -12.46489 -12.40707 -12.14577 -11.94494 -11.67210 -11.63817 -11.53537 -11.27532 -11.23543 -11.05863 -11.03077 -10.67203 -10.58512 -10.44904 -10.29317 -10.26985 -10.08444 -9.92829 -9.47027 -8.79782 -8.59747 -8.00362 -7.92887 -7.60803 -6.33412 -4.36988 2.12607 2.39112 2.41430 2.97314 3.14445 3.25145 3.26665 3.60235 3.77128 4.22885 4.62381 4.82209 4.86997 5.00020 5.04896 5.25548 5.37924 5.43353 5.64314 5.71855 5.72896 5.74418 5.81712 5.91239 5.91487 5.99903 6.00875 6.12833 6.21099 6.24964 6.32974 6.38298 6.49727 6.53095 6.58951 6.65492 6.77255 6.85896 6.96571 7.15327 7.25526 7.38194 7.45670 7.57464 7.72269 7.85179 7.94593 8.02959 8.19290 8.63208 9.12307 9.25079 10.74358 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.004699 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.319563 B = 5957.013317 C = 7442.963067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.074 4.074 3 H 0.074 0.926 4 C -0.125 4.125 5 C 0.094 3.906 6 N -0.607 5.607 7 C 0.531 3.469 8 O -0.563 6.563 9 C 0.054 3.946 10 H 0.085 0.915 11 C -0.511 4.511 12 H 0.064 0.936 13 C 0.076 3.924 14 N -0.873 5.873 15 Si 0.891 3.109 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.009 4.009 20 C -0.084 4.084 21 C -0.135 4.135 22 C -0.148 4.148 23 C -0.133 4.133 24 C -0.115 4.115 25 C 0.123 3.877 26 C -0.091 4.091 27 H 0.112 0.888 28 C 0.488 3.512 29 O -0.513 6.513 30 O -0.513 6.513 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.052 0.948 38 H 0.267 0.733 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 5.393 6.555 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.093 4.093 3 H 0.093 0.907 4 C -0.163 4.163 5 C -0.028 4.028 6 N -0.340 5.340 7 C 0.323 3.677 8 O -0.442 6.442 9 C 0.033 3.967 10 H 0.103 0.897 11 C -0.549 4.549 12 H 0.083 0.917 13 C -0.129 4.129 14 N -0.509 5.509 15 Si 0.718 3.282 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.010 4.010 20 C -0.102 4.102 21 C -0.154 4.154 22 C -0.166 4.166 23 C -0.151 4.151 24 C -0.133 4.133 25 C -0.001 4.001 26 C -0.111 4.111 27 H 0.130 0.870 28 C 0.330 3.670 29 O -0.401 6.401 30 O -0.324 6.324 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.158 0.842 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.077 5.069 6.536 8.825 hybrid contribution 0.539 0.978 -0.172 1.130 sum -2.538 6.047 6.364 9.138 Atomic orbital electron populations 1.22137 0.94756 1.02144 1.02811 1.20994 0.96719 0.98896 0.92662 0.90729 1.21905 1.01889 0.96164 0.96332 1.22215 0.98795 0.93378 0.88445 1.47941 1.58668 1.21796 1.05602 1.21635 0.74287 0.79339 0.92437 1.90586 1.54729 1.64145 1.34696 1.18119 0.98613 0.90489 0.89479 0.89731 1.20642 1.25618 1.17743 0.90882 0.91735 1.24916 0.95205 0.95195 0.97619 1.69903 1.35803 1.35832 1.09315 0.86534 0.81470 0.80104 0.80098 1.19426 1.20709 1.20667 1.19989 0.94028 0.94660 0.92362 1.20819 0.94827 0.96973 0.97557 1.20948 0.99454 0.93061 1.01898 1.20793 0.96321 0.97071 1.02455 1.20892 0.95725 0.97413 1.01064 1.20965 0.99806 0.92128 1.00437 1.21275 0.99261 0.89689 0.89917 1.21528 1.03359 0.96695 0.89496 0.87008 1.23524 0.76218 0.82625 0.84604 1.90650 1.36318 1.26024 1.87111 1.84616 1.72863 1.58098 1.16833 0.91098 0.92551 0.92371 0.90831 0.90608 0.84168 0.93002 0.92273 0.87100 0.87662 0.87787 0.87636 0.87094 0.88364 0.91839 0.73574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.13 37.16 0.30 -1.73 16 2 C -0.07 -0.97 2.35 -90.58 -0.21 -1.18 16 3 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 4 C -0.12 -1.78 5.63 -26.61 -0.15 -1.93 16 5 C 0.09 1.54 5.41 -3.71 -0.02 1.52 16 6 N -0.61 -10.82 2.97 -172.77 -0.51 -11.34 16 7 C 0.53 11.35 6.98 -10.99 -0.08 11.28 16 8 O -0.56 -13.27 14.86 5.56 0.08 -13.19 16 9 C 0.05 1.21 1.51 -94.08 -0.14 1.07 16 10 H 0.08 2.02 7.08 -51.93 -0.37 1.65 16 11 C -0.51 -11.78 5.08 -34.44 -0.17 -11.96 16 12 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 13 C 0.08 1.80 5.23 -17.82 -0.09 1.70 16 14 N -0.87 -21.64 12.92 55.43 0.72 -20.93 16 15 Si 0.89 18.93 29.54 -169.99 -5.02 13.91 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 C -0.01 -0.21 4.29 -104.63 -0.45 -0.66 16 20 C -0.08 -1.85 8.35 -39.58 -0.33 -2.18 16 21 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16 22 C -0.15 -2.75 10.05 -39.59 -0.40 -3.14 16 23 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 24 C -0.12 -2.47 9.67 -39.58 -0.38 -2.86 16 25 C 0.12 1.88 5.17 -3.71 -0.02 1.87 16 26 C -0.09 -1.23 2.56 -91.65 -0.23 -1.47 16 27 H 0.11 1.55 8.14 -51.92 -0.42 1.13 16 28 C 0.49 6.23 7.34 36.01 0.26 6.49 16 29 O -0.51 -7.38 14.51 -18.75 -0.27 -7.65 16 30 O -0.51 -5.48 13.35 -39.23 -0.52 -6.00 16 31 H 0.07 0.95 5.64 -51.93 -0.29 0.65 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.74 4.98 -51.93 -0.26 0.49 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.14 2.73 4.39 -51.93 -0.23 2.50 16 37 H 0.05 0.78 6.69 -51.93 -0.35 0.43 16 38 H 0.27 6.40 8.31 -40.82 -0.34 6.07 16 39 H 0.11 2.47 7.87 -52.48 -0.41 2.06 16 40 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 41 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.11 2.30 7.96 -52.49 -0.42 1.88 16 44 H 0.10 1.65 7.01 -51.93 -0.36 1.29 16 45 H 0.06 0.90 6.70 -51.92 -0.35 0.56 16 46 H 0.41 2.41 9.10 45.56 0.41 2.82 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -28.47 365.67 -8.48 -36.95 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.55 Total: 11.90 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.91 Total: -9.17 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.20 Total: -32.27 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.71 Total: -26.84 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.47 -8.48 -36.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573725806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.498 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds