Wall clock time and date at job start Tue Mar 31 2020 17:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.45055 * 2 1 4 4 C 1.53039 * 109.46168 * 240.03290 * 2 1 3 5 5 C 1.53191 * 109.31051 * 301.34291 * 4 2 1 6 6 N 1.46930 * 108.78107 * 305.36535 * 5 4 2 7 7 C 1.34775 * 120.63407 * 233.59034 * 6 5 4 8 8 O 1.21280 * 119.99863 * 180.02562 * 7 6 5 9 9 C 1.50695 * 119.99961 * 0.02562 * 7 6 5 10 10 H 1.09002 * 109.47219 * 299.99931 * 9 7 6 11 11 C 1.50703 * 109.47354 * 59.99955 * 9 7 6 12 12 H 1.08001 * 119.99747 * 24.90376 * 11 9 7 13 13 C 1.37877 * 120.00294 * 204.90743 * 11 9 7 14 14 N 1.31516 * 120.00074 * 5.57058 * 13 11 9 15 15 Si 1.86801 * 119.99894 * 185.57353 * 13 11 9 16 16 H 1.48495 * 109.47282 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46821 * 120.00043 * 15 13 11 18 18 H 1.48505 * 109.47127 * 239.99889 * 15 13 11 19 19 C 1.50699 * 109.47113 * 180.02562 * 9 7 6 20 20 C 1.38227 * 119.99905 * 293.19724 * 19 9 7 21 21 C 1.38243 * 119.99762 * 179.79039 * 20 19 9 22 22 C 1.38224 * 119.99953 * 0.46138 * 21 20 19 23 23 C 1.38239 * 119.99993 * 359.77236 * 22 21 20 24 24 C 1.38230 * 120.00217 * 0.02562 * 23 22 21 25 25 C 1.46930 * 118.73501 * 53.60360 * 6 5 4 26 26 C 1.53040 * 109.45702 * 119.96268 * 2 1 3 27 27 H 1.09010 * 109.52289 * 178.62458 * 26 2 1 28 28 C 1.50701 * 109.50175 * 298.70182 * 26 2 1 29 29 O 1.20824 * 119.99671 * 359.84756 * 28 26 2 30 30 O 1.34221 * 120.00307 * 179.83779 * 28 26 2 31 31 H 1.09000 * 109.47286 * 300.03478 * 1 2 3 32 32 H 1.09003 * 109.47237 * 60.03968 * 1 2 3 33 33 H 1.09005 * 109.47102 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.49667 * 181.39654 * 4 2 1 35 35 H 1.08993 * 109.52566 * 61.31120 * 4 2 1 36 36 H 1.09002 * 109.58706 * 185.57827 * 5 4 2 37 37 H 1.09001 * 109.59185 * 65.15327 * 5 4 2 38 38 H 0.96993 * 120.00043 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.00700 * 359.97438 * 20 19 9 40 40 H 1.08004 * 119.99660 * 180.25199 * 21 20 19 41 41 H 1.08006 * 120.00191 * 179.79231 * 22 21 20 42 42 H 1.08000 * 119.99733 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.00446 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.58818 * 186.60390 * 25 6 5 45 45 H 1.09008 * 109.70024 * 66.25507 * 25 6 5 46 46 H 0.96703 * 117.00294 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 1.4996 -2.1542 -1.2641 6 7 1.8625 -2.8089 0.0002 7 6 2.5157 -3.9878 0.0002 8 8 2.8092 -4.5184 1.0506 9 6 2.8812 -4.6468 -1.3048 10 1 1.9753 -4.8477 -1.8767 11 6 3.7814 -3.7320 -2.0947 12 1 4.3802 -2.9916 -1.5851 13 6 3.8404 -3.8401 -3.4679 14 7 3.0324 -4.6645 -4.0980 15 14 5.0683 -2.8157 -4.4335 16 1 5.8553 -1.9737 -3.4971 17 1 5.9841 -3.7149 -5.1805 18 1 4.3412 -1.9436 -5.3907 19 6 3.5986 -5.9431 -1.0293 20 6 4.8483 -5.9295 -0.4388 21 6 5.5045 -7.1189 -0.1822 22 6 4.9150 -8.3213 -0.5248 23 6 3.6673 -8.3347 -1.1198 24 6 3.0093 -7.1456 -1.3726 25 6 1.4996 -2.1541 1.2644 26 6 2.0398 -0.7207 1.2501 27 1 3.1296 -0.7427 1.2390 28 6 1.5641 0.0084 2.4803 29 8 0.8890 1.0042 2.3690 30 8 1.8902 -0.4486 3.6994 31 1 -0.3634 0.5144 0.8897 32 1 -0.3634 0.5132 -0.8904 33 1 -0.3633 -1.0277 0.0005 34 1 3.1296 -0.7428 -1.2382 35 1 1.6963 -0.1937 -2.1401 36 1 1.9383 -2.7018 -2.0983 37 1 0.4147 -2.1348 -1.3672 38 1 3.0737 -4.7403 -5.0641 39 1 5.3109 -4.9898 -0.1752 40 1 6.4792 -7.1084 0.2829 41 1 5.4291 -9.2504 -0.3274 42 1 3.2066 -9.2742 -1.3871 43 1 2.0347 -7.1560 -1.8378 44 1 1.9381 -2.7016 2.0986 45 1 0.4148 -2.1347 1.3700 46 1 1.5616 0.0524 4.4585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573725806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:32 Heat of formation + Delta-G solvation = -122.606329 kcal Electronic energy + Delta-G solvation = -29784.497268 eV Core-core repulsion = 25830.890225 eV Total energy + Delta-G solvation = -3953.607043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00482 -40.92371 -39.62427 -38.45112 -37.11370 -35.68608 -34.31838 -32.92103 -32.38281 -31.50211 -29.25104 -28.75709 -26.42675 -25.32672 -25.06398 -23.17245 -22.91514 -22.29245 -20.61226 -19.29402 -19.02193 -18.53352 -18.06483 -17.46154 -17.36657 -16.98640 -16.67126 -16.08834 -15.97178 -15.62940 -15.52110 -15.35904 -15.14780 -14.48375 -14.40449 -14.23321 -14.00235 -13.95539 -13.46423 -13.29815 -13.26261 -13.01115 -12.81920 -12.77530 -12.57736 -12.50629 -12.29843 -12.15742 -11.98297 -11.81587 -11.75889 -11.55621 -11.49791 -11.22980 -11.15962 -10.61218 -10.32342 -9.52879 -9.45013 -9.22496 -8.16168 -6.22626 0.79114 0.83186 1.09638 1.43072 1.49290 1.56524 1.88797 2.02198 2.37685 2.46039 3.13412 3.28387 3.49947 3.71291 3.90494 4.12082 4.16193 4.24218 4.29662 4.32201 4.44462 4.46590 4.48424 4.54701 4.56137 4.73416 4.79222 4.85479 4.89264 4.90954 4.99977 5.15122 5.15456 5.21641 5.25597 5.38727 5.39877 5.47450 5.48576 5.66951 5.70235 5.80932 5.82343 5.88488 5.98157 6.27274 6.42571 6.60352 6.78334 6.98626 7.39400 7.47705 8.91844 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.004699 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.319563 B = 5957.013317 C = 7442.963067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.068 4.068 3 H 0.084 0.916 4 C -0.118 4.118 5 C 0.093 3.907 6 N -0.601 5.601 7 C 0.527 3.473 8 O -0.591 6.591 9 C 0.059 3.941 10 H 0.063 0.937 11 C -0.501 4.501 12 H 0.055 0.945 13 C 0.043 3.957 14 N -0.900 5.900 15 Si 0.939 3.061 16 H -0.268 1.268 17 H -0.291 1.291 18 H -0.272 1.272 19 C -0.036 4.036 20 C -0.109 4.109 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.132 4.132 24 C -0.139 4.139 25 C 0.125 3.875 26 C -0.089 4.089 27 H 0.107 0.893 28 C 0.498 3.502 29 O -0.527 6.527 30 O -0.512 6.512 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.266 0.734 39 H 0.096 0.904 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 5.752 7.095 9.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.086 4.086 3 H 0.103 0.897 4 C -0.156 4.156 5 C -0.028 4.028 6 N -0.333 5.333 7 C 0.319 3.681 8 O -0.472 6.472 9 C 0.038 3.962 10 H 0.081 0.919 11 C -0.538 4.538 12 H 0.073 0.927 13 C -0.159 4.159 14 N -0.536 5.536 15 Si 0.766 3.234 16 H -0.192 1.192 17 H -0.217 1.217 18 H -0.197 1.197 19 C -0.037 4.037 20 C -0.127 4.127 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.149 4.149 24 C -0.157 4.157 25 C 0.002 3.998 26 C -0.109 4.109 27 H 0.125 0.875 28 C 0.341 3.659 29 O -0.417 6.417 30 O -0.326 6.326 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -2.853 5.470 7.097 9.404 hybrid contribution 0.449 0.818 -0.249 0.966 sum -2.404 6.288 6.847 9.602 Atomic orbital electron populations 1.22076 0.93985 1.01933 1.03261 1.20948 0.97213 0.98963 0.91513 0.89748 1.21847 1.00978 0.94818 0.97983 1.22197 0.99672 0.94192 0.86763 1.47926 1.57322 1.20876 1.07186 1.21463 0.74723 0.80315 0.91627 1.90551 1.56246 1.65244 1.35207 1.17977 0.97570 0.90932 0.89727 0.91904 1.20592 1.25015 1.17282 0.90945 0.92687 1.25393 0.96287 0.96034 0.98225 1.69992 1.37084 1.37279 1.09286 0.85780 0.79717 0.78912 0.79034 1.19198 1.21745 1.19730 1.20125 0.94754 0.95135 0.93664 1.20856 0.95145 0.97648 0.99074 1.21314 1.00454 0.92565 1.01152 1.21251 0.95934 0.98223 1.00840 1.21286 0.95979 0.97725 0.99948 1.21115 1.00201 0.92942 1.01475 1.21344 1.00093 0.90424 0.87974 1.21432 1.03110 0.95541 0.90788 0.87477 1.23112 0.75767 0.82117 0.84893 1.90654 1.36970 1.26596 1.87439 1.84563 1.72630 1.58361 1.17037 0.91522 0.91247 0.92835 0.92194 0.88741 0.87111 0.91283 0.92441 0.88546 0.84836 0.83776 0.84481 0.87597 0.89892 0.90303 0.70969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 8.13 71.98 0.59 -3.01 16 2 C -0.07 -1.67 2.35 -10.77 -0.03 -1.69 16 3 H 0.08 1.98 8.07 -2.39 -0.02 1.96 16 4 C -0.12 -3.27 5.63 30.67 0.17 -3.09 16 5 C 0.09 3.09 5.41 86.36 0.47 3.56 16 6 N -0.60 -21.84 2.97 -818.90 -2.43 -24.28 16 7 C 0.53 23.40 6.98 87.66 0.61 24.01 16 8 O -0.59 -28.87 14.86 -3.03 -0.05 -28.92 16 9 C 0.06 2.77 1.51 -13.03 -0.02 2.75 16 10 H 0.06 3.18 7.08 -2.39 -0.02 3.16 16 11 C -0.50 -23.84 5.08 25.60 0.13 -23.71 16 12 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 13 C 0.04 2.08 5.23 84.65 0.44 2.52 16 14 N -0.90 -45.77 12.92 21.45 0.28 -45.49 16 15 Si 0.94 39.18 29.54 68.60 2.03 41.21 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 19 C -0.04 -1.68 4.29 -19.87 -0.09 -1.77 16 20 C -0.11 -4.90 8.35 22.27 0.19 -4.71 16 21 C -0.14 -5.19 10.05 22.27 0.22 -4.96 16 22 C -0.14 -4.99 10.05 22.27 0.22 -4.76 16 23 C -0.13 -4.85 10.05 22.27 0.22 -4.62 16 24 C -0.14 -6.08 9.67 22.27 0.22 -5.87 16 25 C 0.12 3.81 5.17 86.36 0.45 4.25 16 26 C -0.09 -2.32 2.56 -11.46 -0.03 -2.35 16 27 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 28 C 0.50 11.89 7.34 71.24 0.52 12.42 16 29 O -0.53 -14.09 14.51 21.97 0.32 -13.77 16 30 O -0.51 -10.00 13.35 -51.33 -0.69 -10.68 16 31 H 0.07 1.64 5.64 -2.39 -0.01 1.62 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.27 4.98 -2.38 -0.01 1.26 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.11 4.45 4.39 -2.39 -0.01 4.44 16 37 H 0.07 2.05 6.69 -2.39 -0.02 2.03 16 38 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 39 H 0.10 4.47 7.87 -2.91 -0.02 4.45 16 40 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.11 4.58 7.96 -2.91 -0.02 4.55 16 44 H 0.08 2.82 7.01 -2.39 -0.02 2.80 16 45 H 0.08 2.17 6.70 -2.38 -0.02 2.16 16 46 H 0.43 4.08 9.10 -74.05 -0.67 3.41 16 Total: -1.00 -62.24 365.67 4.09 -58.15 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.34 Total: 34.83 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.29 Total: -11.04 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -2.16 Total: -69.77 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.41 Total: -53.38 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -62.24 4.09 -58.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573725806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.455 kcal (2) G-P(sol) polarization free energy of solvation -62.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds