Wall clock time and date at job start Tue Mar 31 2020 17:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.45354 * 2 1 4 4 C 1.53044 * 109.45874 * 240.03432 * 2 1 3 5 5 C 1.53199 * 109.31452 * 301.35181 * 4 2 1 6 6 N 1.46933 * 108.77063 * 305.36101 * 5 4 2 7 7 C 1.34772 * 120.62684 * 233.63269 * 6 5 4 8 8 O 1.21281 * 119.99792 * 179.97438 * 7 6 5 9 9 C 1.50699 * 120.00448 * 359.97418 * 7 6 5 10 10 H 1.09001 * 109.46575 * 60.00558 * 9 7 6 11 11 C 1.50701 * 109.47248 * 300.00615 * 9 7 6 12 12 H 1.07996 * 119.99996 * 326.29464 * 11 9 7 13 13 C 1.37878 * 119.99832 * 146.29421 * 11 9 7 14 14 N 1.31517 * 120.00378 * 5.35664 * 13 11 9 15 15 Si 1.86801 * 119.99655 * 185.34943 * 13 11 9 16 16 H 1.48499 * 109.47312 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46832 * 120.00276 * 15 13 11 18 18 H 1.48506 * 109.47233 * 240.00265 * 15 13 11 19 19 C 1.50694 * 109.47320 * 180.02562 * 9 7 6 20 20 C 1.38237 * 119.99735 * 66.41605 * 19 9 7 21 21 C 1.38243 * 119.99785 * 179.78884 * 20 19 9 22 22 C 1.38226 * 119.99891 * 0.45738 * 21 20 19 23 23 C 1.38238 * 120.00418 * 359.77326 * 22 21 20 24 24 C 1.38232 * 119.99521 * 0.02562 * 23 22 21 25 25 C 1.46926 * 118.73961 * 53.61097 * 6 5 4 26 26 C 1.53048 * 109.45973 * 119.97248 * 2 1 3 27 27 H 1.08996 * 109.52141 * 178.61922 * 26 2 1 28 28 C 1.50692 * 109.49529 * 298.69830 * 26 2 1 29 29 O 1.20832 * 120.00348 * 359.84388 * 28 26 2 30 30 O 1.34229 * 120.00196 * 179.83787 * 28 26 2 31 31 H 1.08999 * 109.46729 * 300.02958 * 1 2 3 32 32 H 1.09003 * 109.47111 * 60.02932 * 1 2 3 33 33 H 1.08999 * 109.47581 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.49852 * 181.39533 * 4 2 1 35 35 H 1.08999 * 109.52327 * 61.31125 * 4 2 1 36 36 H 1.09000 * 109.58515 * 185.57816 * 5 4 2 37 37 H 1.08994 * 109.58682 * 65.14802 * 5 4 2 38 38 H 0.96993 * 120.00189 * 179.97438 * 14 13 11 39 39 H 1.07999 * 120.00046 * 359.97438 * 20 19 9 40 40 H 1.08002 * 119.99768 * 180.25135 * 21 20 19 41 41 H 1.08010 * 119.99786 * 179.79200 * 22 21 20 42 42 H 1.07999 * 120.00359 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99631 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.58640 * 186.60481 * 25 6 5 45 45 H 1.08999 * 109.70413 * 66.24686 * 25 6 5 46 46 H 0.96697 * 117.00259 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 1.4994 -2.1542 -1.2644 6 7 1.8624 -2.8090 -0.0001 7 6 2.5162 -3.9875 -0.0003 8 8 2.8106 -4.5177 1.0500 9 6 2.8814 -4.6465 -1.3054 10 1 3.5318 -3.9845 -1.8771 11 6 1.6287 -4.9250 -2.0954 12 1 0.7130 -5.1810 -1.5832 13 6 1.6515 -4.8530 -3.4721 14 7 2.7878 -4.6454 -4.1010 15 14 0.0686 -5.0505 -4.4441 16 1 -1.0627 -5.2721 -3.5080 17 1 -0.1808 -3.8212 -5.2389 18 1 0.1908 -6.2147 -5.3580 19 6 3.5997 -5.9423 -1.0301 20 6 2.9271 -6.9920 -0.4329 21 6 3.5848 -8.1823 -0.1844 22 6 4.9175 -8.3195 -0.5244 23 6 5.5915 -7.2682 -1.1173 24 6 4.9327 -6.0795 -1.3696 25 6 1.4995 -2.1543 1.2642 26 6 2.0399 -0.7209 1.2501 27 1 3.1295 -0.7430 1.2388 28 6 1.5642 0.0080 2.4802 29 8 0.8892 1.0040 2.3691 30 8 1.8904 -0.4491 3.6994 31 1 -0.3633 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 -0.3634 -1.0276 0.0005 34 1 3.1295 -0.7429 -1.2384 35 1 1.6962 -0.1936 -2.1401 36 1 1.9380 -2.7017 -2.0986 37 1 0.4145 -2.1346 -1.3675 38 1 2.8039 -4.5951 -5.0695 39 1 1.8870 -6.8832 -0.1632 40 1 3.0582 -9.0038 0.2785 41 1 5.4323 -9.2483 -0.3271 42 1 6.6329 -7.3753 -1.3826 43 1 5.4593 -5.2580 -1.8324 44 1 1.9381 -2.7020 2.0983 45 1 0.4148 -2.1349 1.3698 46 1 1.5618 0.0519 4.4584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573725809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:41 Heat of formation + Delta-G solvation = -107.842665 kcal Electronic energy + Delta-G solvation = -29692.663441 eV Core-core repulsion = 25739.696598 eV Total energy + Delta-G solvation = -3952.966842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87603 -39.48392 -38.19411 -37.05979 -36.09956 -33.95810 -32.90126 -31.43953 -30.97740 -29.92967 -27.80237 -27.44058 -24.91226 -24.15327 -23.47143 -21.81117 -21.58836 -20.76832 -19.26482 -18.14967 -17.76350 -17.02491 -16.51479 -16.15247 -16.08141 -15.68367 -15.13300 -14.63219 -14.43519 -14.37570 -14.12005 -13.96541 -13.74992 -13.41340 -12.91270 -12.76376 -12.49048 -12.38962 -12.15296 -11.96470 -11.70574 -11.65894 -11.50912 -11.39033 -11.20662 -11.06849 -11.01370 -10.71360 -10.61900 -10.43679 -10.34129 -10.26302 -10.11265 -9.93496 -9.44980 -8.83129 -8.60608 -8.00392 -7.93331 -7.60508 -6.32894 -4.37267 2.10363 2.38635 2.41086 2.95113 3.13992 3.24638 3.27221 3.61135 3.75914 4.23148 4.58383 4.80884 4.83716 4.96725 5.03057 5.21337 5.34388 5.39523 5.60610 5.66103 5.72738 5.73945 5.81043 5.89220 5.90808 5.96389 5.98167 6.11207 6.20874 6.22899 6.30171 6.36760 6.49238 6.51037 6.53159 6.60003 6.75326 6.84078 6.95919 7.14364 7.22788 7.37785 7.45680 7.58567 7.72255 7.83059 7.94172 8.02981 8.19214 8.64234 9.13292 9.25603 10.74618 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.004710 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.395685 B = 5942.916758 C = 7646.123870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.073 4.073 3 H 0.075 0.925 4 C -0.132 4.132 5 C 0.105 3.895 6 N -0.606 5.606 7 C 0.530 3.470 8 O -0.564 6.564 9 C 0.053 3.947 10 H 0.088 0.912 11 C -0.510 4.510 12 H 0.064 0.936 13 C 0.074 3.926 14 N -0.875 5.875 15 Si 0.892 3.108 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.282 1.282 19 C -0.009 4.009 20 C -0.085 4.085 21 C -0.134 4.134 22 C -0.149 4.149 23 C -0.132 4.132 24 C -0.117 4.117 25 C 0.122 3.878 26 C -0.091 4.091 27 H 0.111 0.889 28 C 0.488 3.512 29 O -0.512 6.512 30 O -0.513 6.513 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.267 0.733 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 6.844 6.645 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.091 4.091 3 H 0.093 0.907 4 C -0.171 4.171 5 C -0.017 4.017 6 N -0.340 5.340 7 C 0.322 3.678 8 O -0.442 6.442 9 C 0.032 3.968 10 H 0.106 0.894 11 C -0.548 4.548 12 H 0.082 0.918 13 C -0.131 4.131 14 N -0.511 5.511 15 Si 0.719 3.281 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.208 1.208 19 C -0.010 4.010 20 C -0.103 4.103 21 C -0.153 4.153 22 C -0.167 4.167 23 C -0.150 4.150 24 C -0.135 4.135 25 C -0.002 4.002 26 C -0.111 4.111 27 H 0.129 0.871 28 C 0.331 3.669 29 O -0.400 6.400 30 O -0.324 6.324 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.083 0.917 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.338 6.616 6.625 9.369 hybrid contribution -1.045 0.288 -0.199 1.102 sum -1.383 6.904 6.426 9.533 Atomic orbital electron populations 1.22146 0.94590 1.02386 1.02875 1.20971 0.96910 0.98810 0.92457 0.90690 1.22063 1.01257 0.96919 0.96837 1.22050 1.00295 0.91622 0.87774 1.47913 1.58617 1.21914 1.05527 1.21752 0.74516 0.79007 0.92523 1.90584 1.55267 1.63637 1.34742 1.18133 0.97819 0.91279 0.89576 0.89393 1.20696 0.93980 1.49413 0.90730 0.91817 1.24931 0.96393 0.94123 0.97644 1.69928 1.24730 1.47236 1.09170 0.86517 0.83375 0.78110 0.80145 1.19439 1.20516 1.20762 1.19991 0.92116 0.96637 0.92264 1.20816 0.99362 0.92493 0.97627 1.20946 0.94866 0.97576 1.01875 1.20792 0.95041 0.98335 1.02513 1.20893 0.98946 0.94166 1.01012 1.20961 0.94590 0.97312 1.00619 1.21279 0.99511 0.89508 0.89899 1.21532 1.03207 0.96813 0.89574 0.87120 1.23483 0.76253 0.82605 0.84603 1.90655 1.36266 1.26011 1.87114 1.84612 1.72850 1.58109 1.16828 0.91032 0.92499 0.92160 0.91458 0.90367 0.85289 0.91979 0.92293 0.87169 0.87651 0.87769 0.87613 0.87095 0.88308 0.91712 0.73523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.13 37.16 0.30 -1.76 16 2 C -0.07 -0.92 2.35 -90.57 -0.21 -1.14 16 3 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 4 C -0.13 -1.79 5.63 -26.61 -0.15 -1.94 16 5 C 0.10 1.75 5.12 -3.70 -0.02 1.73 16 6 N -0.61 -10.88 2.97 -172.76 -0.51 -11.39 16 7 C 0.53 11.38 6.98 -10.99 -0.08 11.31 16 8 O -0.56 -13.32 14.85 5.56 0.08 -13.23 16 9 C 0.05 1.20 1.56 -94.08 -0.15 1.05 16 10 H 0.09 2.09 6.72 -51.93 -0.35 1.74 16 11 C -0.51 -12.01 5.50 -34.44 -0.19 -12.20 16 12 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 13 C 0.07 1.76 4.92 -17.82 -0.09 1.68 16 14 N -0.88 -21.72 12.87 55.43 0.71 -21.01 16 15 Si 0.89 18.99 29.54 -169.99 -5.02 13.97 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 C -0.01 -0.21 4.29 -104.63 -0.45 -0.66 16 20 C -0.08 -1.88 8.33 -39.58 -0.33 -2.21 16 21 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 22 C -0.15 -2.75 10.05 -39.59 -0.40 -3.14 16 23 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 24 C -0.12 -2.50 9.67 -39.59 -0.38 -2.88 16 25 C 0.12 1.88 5.17 -3.71 -0.02 1.86 16 26 C -0.09 -1.20 2.56 -91.65 -0.23 -1.43 16 27 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 28 C 0.49 6.10 7.34 36.00 0.26 6.36 16 29 O -0.51 -7.26 14.51 -18.75 -0.27 -7.53 16 30 O -0.51 -5.35 13.35 -39.25 -0.52 -5.87 16 31 H 0.07 0.96 5.64 -51.93 -0.29 0.67 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.80 4.98 -51.93 -0.26 0.54 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.13 2.52 4.56 -51.93 -0.24 2.28 16 37 H 0.06 1.00 6.69 -51.93 -0.35 0.66 16 38 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 39 H 0.11 2.47 7.88 -52.49 -0.41 2.06 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.11 2.28 7.96 -52.49 -0.42 1.86 16 44 H 0.10 1.66 7.01 -51.93 -0.36 1.29 16 45 H 0.06 0.95 6.70 -51.93 -0.35 0.60 16 46 H 0.41 2.33 9.10 45.56 0.41 2.74 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -28.77 365.28 -8.49 -37.26 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.54 Total: 11.64 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.92 Total: -9.34 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.20 Total: -32.40 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.71 Total: -26.64 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.77 -8.49 -37.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573725809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.579 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds