Wall clock time and date at job start Tue Mar 31 2020 17:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.45354 * 2 1 4 4 C 1.53044 * 109.45874 * 240.03432 * 2 1 3 5 5 C 1.53199 * 109.31452 * 301.35181 * 4 2 1 6 6 N 1.46933 * 108.77063 * 305.36101 * 5 4 2 7 7 C 1.34772 * 120.62684 * 233.63269 * 6 5 4 8 8 O 1.21281 * 119.99792 * 179.97438 * 7 6 5 9 9 C 1.50699 * 120.00448 * 359.97418 * 7 6 5 10 10 H 1.09001 * 109.46575 * 60.00558 * 9 7 6 11 11 C 1.50701 * 109.47248 * 300.00615 * 9 7 6 12 12 H 1.07996 * 119.99996 * 326.29464 * 11 9 7 13 13 C 1.37878 * 119.99832 * 146.29421 * 11 9 7 14 14 N 1.31517 * 120.00378 * 5.35664 * 13 11 9 15 15 Si 1.86801 * 119.99655 * 185.34943 * 13 11 9 16 16 H 1.48499 * 109.47312 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46832 * 120.00276 * 15 13 11 18 18 H 1.48506 * 109.47233 * 240.00265 * 15 13 11 19 19 C 1.50694 * 109.47320 * 180.02562 * 9 7 6 20 20 C 1.38237 * 119.99735 * 66.41605 * 19 9 7 21 21 C 1.38243 * 119.99785 * 179.78884 * 20 19 9 22 22 C 1.38226 * 119.99891 * 0.45738 * 21 20 19 23 23 C 1.38238 * 120.00418 * 359.77326 * 22 21 20 24 24 C 1.38232 * 119.99521 * 0.02562 * 23 22 21 25 25 C 1.46926 * 118.73961 * 53.61097 * 6 5 4 26 26 C 1.53048 * 109.45973 * 119.97248 * 2 1 3 27 27 H 1.08996 * 109.52141 * 178.61922 * 26 2 1 28 28 C 1.50692 * 109.49529 * 298.69830 * 26 2 1 29 29 O 1.20832 * 120.00348 * 359.84388 * 28 26 2 30 30 O 1.34229 * 120.00196 * 179.83787 * 28 26 2 31 31 H 1.08999 * 109.46729 * 300.02958 * 1 2 3 32 32 H 1.09003 * 109.47111 * 60.02932 * 1 2 3 33 33 H 1.08999 * 109.47581 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.49852 * 181.39533 * 4 2 1 35 35 H 1.08999 * 109.52327 * 61.31125 * 4 2 1 36 36 H 1.09000 * 109.58515 * 185.57816 * 5 4 2 37 37 H 1.08994 * 109.58682 * 65.14802 * 5 4 2 38 38 H 0.96993 * 120.00189 * 179.97438 * 14 13 11 39 39 H 1.07999 * 120.00046 * 359.97438 * 20 19 9 40 40 H 1.08002 * 119.99768 * 180.25135 * 21 20 19 41 41 H 1.08010 * 119.99786 * 179.79200 * 22 21 20 42 42 H 1.07999 * 120.00359 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99631 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.58640 * 186.60481 * 25 6 5 45 45 H 1.08999 * 109.70413 * 66.24686 * 25 6 5 46 46 H 0.96697 * 117.00259 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 1.4994 -2.1542 -1.2644 6 7 1.8624 -2.8090 -0.0001 7 6 2.5162 -3.9875 -0.0003 8 8 2.8106 -4.5177 1.0500 9 6 2.8814 -4.6465 -1.3054 10 1 3.5318 -3.9845 -1.8771 11 6 1.6287 -4.9250 -2.0954 12 1 0.7130 -5.1810 -1.5832 13 6 1.6515 -4.8530 -3.4721 14 7 2.7878 -4.6454 -4.1010 15 14 0.0686 -5.0505 -4.4441 16 1 -1.0627 -5.2721 -3.5080 17 1 -0.1808 -3.8212 -5.2389 18 1 0.1908 -6.2147 -5.3580 19 6 3.5997 -5.9423 -1.0301 20 6 2.9271 -6.9920 -0.4329 21 6 3.5848 -8.1823 -0.1844 22 6 4.9175 -8.3195 -0.5244 23 6 5.5915 -7.2682 -1.1173 24 6 4.9327 -6.0795 -1.3696 25 6 1.4995 -2.1543 1.2642 26 6 2.0399 -0.7209 1.2501 27 1 3.1295 -0.7430 1.2388 28 6 1.5642 0.0080 2.4802 29 8 0.8892 1.0040 2.3691 30 8 1.8904 -0.4491 3.6994 31 1 -0.3633 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 -0.3634 -1.0276 0.0005 34 1 3.1295 -0.7429 -1.2384 35 1 1.6962 -0.1936 -2.1401 36 1 1.9380 -2.7017 -2.0986 37 1 0.4145 -2.1346 -1.3675 38 1 2.8039 -4.5951 -5.0695 39 1 1.8870 -6.8832 -0.1632 40 1 3.0582 -9.0038 0.2785 41 1 5.4323 -9.2483 -0.3271 42 1 6.6329 -7.3753 -1.3826 43 1 5.4593 -5.2580 -1.8324 44 1 1.9381 -2.7020 2.0983 45 1 0.4148 -2.1349 1.3698 46 1 1.5618 0.0519 4.4584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573725809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:40 Heat of formation + Delta-G solvation = -123.356195 kcal Electronic energy + Delta-G solvation = -29693.336158 eV Core-core repulsion = 25739.696598 eV Total energy + Delta-G solvation = -3953.639560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00632 -40.92024 -39.63202 -38.45995 -37.11324 -35.69590 -34.30874 -32.94559 -32.41241 -31.50791 -29.28464 -28.73292 -26.46353 -25.34290 -25.05326 -23.18388 -22.91510 -22.28229 -20.62615 -19.23992 -19.00247 -18.67806 -17.96071 -17.56972 -17.36148 -16.99397 -16.66084 -16.16892 -15.87197 -15.74535 -15.43242 -15.32048 -15.25751 -14.47800 -14.41635 -14.23680 -13.99110 -13.94949 -13.54168 -13.33997 -13.26650 -12.97641 -12.85414 -12.76173 -12.60035 -12.49653 -12.30804 -12.15261 -11.96976 -11.85575 -11.76761 -11.54983 -11.52221 -11.23618 -11.18701 -10.64576 -10.34281 -9.53351 -9.45666 -9.22611 -8.17218 -6.25511 0.78612 0.82861 1.09668 1.42356 1.48205 1.56147 1.91848 1.98319 2.37900 2.45237 3.10726 3.28142 3.48751 3.69979 3.88138 4.08392 4.15489 4.23012 4.28388 4.32182 4.43687 4.45785 4.47026 4.52759 4.56433 4.73600 4.78152 4.82543 4.88074 4.90477 4.99947 5.11926 5.14982 5.18057 5.23625 5.32755 5.39124 5.45781 5.47974 5.66565 5.69250 5.78236 5.81386 5.88021 5.97467 6.26291 6.42309 6.59572 6.76522 6.98576 7.38002 7.47753 8.90453 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.004710 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.395685 B = 5942.916758 C = 7646.123870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.067 4.067 3 H 0.089 0.911 4 C -0.124 4.124 5 C 0.104 3.896 6 N -0.601 5.601 7 C 0.526 3.474 8 O -0.592 6.592 9 C 0.059 3.941 10 H 0.069 0.931 11 C -0.506 4.506 12 H 0.049 0.951 13 C 0.043 3.957 14 N -0.899 5.899 15 Si 0.941 3.059 16 H -0.271 1.271 17 H -0.268 1.268 18 H -0.289 1.289 19 C -0.037 4.037 20 C -0.111 4.111 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.130 4.130 24 C -0.140 4.140 25 C 0.124 3.876 26 C -0.088 4.088 27 H 0.113 0.887 28 C 0.498 3.502 29 O -0.527 6.527 30 O -0.512 6.512 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.268 0.732 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 7.074 7.018 9.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.085 4.085 3 H 0.107 0.893 4 C -0.162 4.162 5 C -0.017 4.017 6 N -0.333 5.333 7 C 0.318 3.682 8 O -0.473 6.473 9 C 0.038 3.962 10 H 0.087 0.913 11 C -0.544 4.544 12 H 0.067 0.933 13 C -0.159 4.159 14 N -0.536 5.536 15 Si 0.767 3.233 16 H -0.196 1.196 17 H -0.193 1.193 18 H -0.215 1.215 19 C -0.038 4.038 20 C -0.129 4.129 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.148 4.148 24 C -0.158 4.158 25 C 0.001 3.999 26 C -0.108 4.108 27 H 0.131 0.869 28 C 0.341 3.659 29 O -0.417 6.417 30 O -0.326 6.326 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.157 0.843 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -0.274 6.885 7.017 9.835 hybrid contribution -1.041 0.174 -0.229 1.080 sum -1.315 7.059 6.788 9.881 Atomic orbital electron populations 1.22092 0.94332 1.01815 1.03277 1.20939 0.97000 0.99147 0.91460 0.89314 1.21990 1.01065 0.94822 0.98302 1.22029 1.00470 0.93084 0.86167 1.47897 1.57267 1.21007 1.07115 1.21569 0.75012 0.79930 0.91718 1.90548 1.56803 1.64710 1.35245 1.17980 0.97115 0.91322 0.89798 0.91323 1.20629 0.93745 1.49069 0.90963 0.93307 1.25402 0.98379 0.93974 0.98151 1.70008 1.26043 1.48285 1.09240 0.85761 0.80675 0.78036 0.78855 1.19576 1.19296 1.21535 1.20140 0.93146 0.96875 0.93626 1.20842 0.98988 0.93875 0.99218 1.21307 0.95712 0.97229 1.01151 1.21255 0.94548 0.99579 1.00855 1.21296 1.00470 0.93203 0.99820 1.21119 0.94424 0.98647 1.01596 1.21336 1.00015 0.90599 0.87965 1.21439 1.03351 0.95244 0.90758 0.86883 1.23114 0.75781 0.82107 0.84918 1.90659 1.36930 1.26657 1.87447 1.84561 1.72617 1.58368 1.17041 0.91473 0.91267 0.93143 0.91647 0.88508 0.88182 0.91443 0.92303 0.88825 0.84865 0.83710 0.84346 0.87445 0.89778 0.90800 0.70964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.13 71.98 0.59 -3.15 16 2 C -0.07 -1.59 2.35 -10.76 -0.03 -1.61 16 3 H 0.09 1.94 8.07 -2.39 -0.02 1.92 16 4 C -0.12 -3.22 5.63 30.68 0.17 -3.05 16 5 C 0.10 3.51 5.12 86.36 0.44 3.95 16 6 N -0.60 -22.08 2.97 -818.89 -2.43 -24.51 16 7 C 0.53 23.55 6.98 87.66 0.61 24.17 16 8 O -0.59 -29.07 14.85 -3.03 -0.05 -29.11 16 9 C 0.06 2.79 1.56 -13.03 -0.02 2.77 16 10 H 0.07 3.46 6.72 -2.39 -0.02 3.44 16 11 C -0.51 -24.71 5.50 25.60 0.14 -24.57 16 12 H 0.05 2.48 7.82 -2.91 -0.02 2.46 16 13 C 0.04 2.11 4.92 84.65 0.42 2.53 16 14 N -0.90 -45.67 12.87 21.45 0.28 -45.40 16 15 Si 0.94 39.30 29.54 68.60 2.03 41.33 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 18 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 19 C -0.04 -1.74 4.29 -19.87 -0.09 -1.83 16 20 C -0.11 -5.03 8.33 22.27 0.19 -4.85 16 21 C -0.14 -5.17 10.05 22.27 0.22 -4.95 16 22 C -0.14 -4.97 10.05 22.27 0.22 -4.74 16 23 C -0.13 -4.76 10.05 22.27 0.22 -4.54 16 24 C -0.14 -6.08 9.67 22.27 0.22 -5.86 16 25 C 0.12 3.82 5.17 86.36 0.45 4.26 16 26 C -0.09 -2.22 2.56 -11.46 -0.03 -2.25 16 27 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 28 C 0.50 11.63 7.34 71.23 0.52 12.15 16 29 O -0.53 -13.92 14.51 21.95 0.32 -13.60 16 30 O -0.51 -9.77 13.35 -51.40 -0.69 -10.46 16 31 H 0.07 1.68 5.64 -2.39 -0.01 1.66 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.28 4.98 -2.39 -0.01 1.26 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.10 4.04 4.56 -2.39 -0.01 4.02 16 37 H 0.07 2.18 6.69 -2.39 -0.02 2.16 16 38 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 39 H 0.09 4.42 7.88 -2.91 -0.02 4.39 16 40 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 41 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.11 4.59 7.96 -2.91 -0.02 4.57 16 44 H 0.08 2.87 7.01 -2.39 -0.02 2.85 16 45 H 0.07 2.14 6.70 -2.39 -0.02 2.13 16 46 H 0.43 3.96 9.10 -74.06 -0.67 3.28 16 Total: -1.00 -63.04 365.28 4.05 -58.99 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.34 Total: 34.32 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.25 Total: -11.56 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -2.16 Total: -69.91 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -0.41 Total: -53.17 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -63.04 4.05 -58.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573725809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.362 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds