Wall clock time and date at job start Tue Mar 31 2020 17:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47264 * 2 1 4 4 N 1.46501 * 109.47478 * 239.99594 * 2 1 3 5 5 C 1.34779 * 119.99698 * 85.00105 * 4 2 1 6 6 O 1.21705 * 120.00394 * 0.02562 * 5 4 2 7 7 C 1.46607 * 119.99580 * 180.02562 * 5 4 2 8 8 C 1.38024 * 126.00614 * 179.69288 * 7 5 4 9 9 C 1.39398 * 107.42861 * 179.87281 * 8 7 5 10 10 C 1.37744 * 107.65335 * 0.38465 * 9 8 7 11 11 C 1.47917 * 125.82068 * 179.78166 * 10 9 8 12 12 N 1.34208 * 126.70016 * 179.66144 * 11 10 9 13 13 N 1.28991 * 107.24671 * 179.89416 * 12 11 10 14 14 N 1.28720 * 108.99719 * 0.37260 * 13 12 11 15 15 H 0.96998 * 125.31364 * 179.79743 * 14 13 12 16 16 N 1.28874 * 109.36431 * 359.76330 * 14 13 12 17 17 N 1.36386 * 108.35942 * 359.75897 * 10 9 8 18 18 H 0.97000 * 125.71714 * 179.97438 * 17 10 9 19 19 C 1.53007 * 109.47165 * 119.99423 * 2 1 3 20 20 C 1.53943 * 113.73967 * 282.00108 * 19 2 1 21 21 N 1.47812 * 86.03288 * 222.07840 * 20 19 2 22 22 C 1.36941 * 134.45949 * 204.64456 * 21 20 19 23 23 H 1.07998 * 120.00363 * 179.86974 * 22 21 20 24 24 C 1.38817 * 119.99599 * 359.86590 * 22 21 20 25 25 N 1.31619 * 119.99967 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99796 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46990 * 90.00397 * 26 24 22 28 28 H 1.48496 * 109.47393 * 210.00324 * 26 24 22 29 29 H 1.48504 * 109.47588 * 330.00800 * 26 24 22 30 30 C 1.47584 * 91.05227 * 24.55205 * 21 20 19 31 31 H 1.09003 * 109.47358 * 175.81044 * 1 2 3 32 32 H 1.09001 * 109.46924 * 55.81369 * 1 2 3 33 33 H 1.08995 * 109.47430 * 295.82008 * 1 2 3 34 34 H 0.96998 * 119.99614 * 265.00160 * 4 2 1 35 35 H 1.08003 * 126.28606 * 0.02562 * 8 7 5 36 36 H 1.08002 * 126.17097 * 180.13649 * 9 8 7 37 37 H 1.09000 * 112.94115 * 53.58853 * 19 2 1 38 38 H 1.08997 * 113.77139 * 336.34419 * 20 19 2 39 39 H 1.09007 * 113.76732 * 107.74921 * 20 19 2 40 40 H 0.97001 * 119.99789 * 179.97438 * 25 24 22 41 41 H 1.08998 * 113.77081 * 221.14893 * 30 21 20 42 42 H 1.08993 * 113.87010 * 89.76485 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8581 1.1626 -2.4117 7 6 2.6354 -0.7097 -3.5542 8 6 2.8085 -0.1467 -4.8024 9 6 3.2899 -1.1452 -5.6477 10 6 3.3957 -2.3028 -4.9088 11 6 3.8633 -3.6123 -5.4135 12 7 3.9792 -4.7485 -4.7087 13 7 4.4164 -5.6556 -5.5149 14 7 4.5840 -5.1351 -6.6801 15 1 4.9079 -5.6066 -7.4635 16 7 4.2534 -3.8900 -6.6435 17 7 2.9963 -2.0358 -3.6324 18 1 2.9703 -2.6736 -2.9020 19 6 2.0400 -0.7212 1.2494 20 6 1.9703 0.1317 2.5291 21 7 3.3066 -0.4161 2.8439 22 6 4.0150 -0.6121 3.9993 23 1 5.0033 -1.0456 3.9599 24 6 3.4627 -0.2533 5.2213 25 7 2.2580 0.2747 5.2694 26 14 4.4287 -0.5212 6.7975 27 1 5.2412 0.6866 7.0914 28 1 3.4874 -0.7694 7.9189 29 1 5.3256 -1.6937 6.6353 30 6 3.5697 -0.6692 1.4139 31 1 -0.3634 -1.0249 -0.0751 32 1 -0.3633 0.5774 -0.8501 33 1 -0.3634 0.4476 0.9250 34 1 2.2490 -1.6318 -1.1524 35 1 2.6100 0.8797 -5.0738 36 1 3.5321 -1.0325 -6.6941 37 1 1.6198 -1.7203 1.3645 38 1 1.9686 1.2055 2.3419 39 1 1.1910 -0.1816 3.2239 40 1 1.8719 0.5250 6.1233 41 1 4.0650 -1.6206 1.2200 42 1 4.0390 0.1677 0.8970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589943562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:40 Heat of formation + Delta-G solvation = 187.622223 kcal Electronic energy + Delta-G solvation = -27049.437701 eV Core-core repulsion = 23070.328336 eV Total energy + Delta-G solvation = -3979.109365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.88969 -41.54478 -39.46792 -37.94813 -34.91552 -34.79404 -33.82436 -32.27219 -31.54626 -30.75889 -29.21899 -27.48572 -25.29953 -25.04977 -24.62902 -23.96854 -22.47901 -21.28176 -20.51486 -20.27541 -19.97462 -19.38926 -18.27753 -17.60103 -16.81368 -16.34249 -15.93662 -15.31495 -14.81927 -14.74376 -14.43079 -14.20824 -14.09517 -13.93386 -13.58405 -13.22281 -13.14719 -12.98771 -12.49008 -12.31666 -12.08133 -11.84811 -11.63379 -11.61796 -11.42041 -11.37505 -11.23400 -10.89537 -10.69226 -10.36960 -10.25578 -9.83775 -9.76678 -9.44437 -9.39872 -8.99056 -8.79357 -8.39550 -6.87825 -5.76905 -3.08956 0.43801 0.84250 1.70158 1.72509 2.51138 2.63838 3.12401 3.29503 3.31125 3.39442 3.44174 3.46118 3.83904 4.45056 4.67797 4.75779 4.94513 4.96811 5.06849 5.11982 5.17804 5.37688 5.52881 5.62031 5.66710 5.79285 5.84247 5.91059 5.95874 6.04549 6.21773 6.29266 6.34449 6.42321 6.49046 6.53802 6.61261 6.75644 6.88378 7.21782 7.35152 7.50440 7.55912 7.66987 7.98143 8.15541 9.04778 9.70929 10.59729 11.40390 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.002390 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.668718 B =11712.007595 C =13062.642760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.091 0.909 4 N -0.716 5.716 5 C 0.585 3.415 6 O -0.524 6.524 7 C -0.009 4.009 8 C -0.114 4.114 9 C -0.140 4.140 10 C 0.100 3.900 11 C 0.244 3.756 12 N -0.275 5.275 13 N -0.042 5.042 14 N -0.224 5.224 15 H 0.478 0.522 16 N -0.280 5.280 17 N -0.514 5.514 18 H 0.425 0.575 19 C -0.148 4.148 20 C 0.176 3.824 21 N -0.612 5.612 22 C -0.223 4.223 23 H 0.079 0.921 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.124 3.876 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.393 0.607 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.254 0.746 41 H 0.039 0.961 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 -8.889 -26.568 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.109 0.891 4 N -0.366 5.366 5 C 0.371 3.629 6 O -0.399 6.399 7 C -0.126 4.126 8 C -0.140 4.140 9 C -0.168 4.168 10 C -0.019 4.019 11 C -0.036 4.036 12 N -0.149 5.149 13 N -0.038 5.038 14 N -0.071 5.071 15 H 0.333 0.667 16 N -0.133 5.133 17 N -0.111 5.111 18 H 0.264 0.736 19 C -0.168 4.168 20 C 0.051 3.949 21 N -0.338 5.338 22 C -0.351 4.351 23 H 0.097 0.903 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.207 1.207 30 C -0.002 4.002 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.226 0.774 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.107 0.893 38 H 0.047 0.953 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.185 -8.768 -25.980 27.421 hybrid contribution 0.855 -0.798 0.703 1.364 sum 1.040 -9.566 -25.277 27.047 Atomic orbital electron populations 1.22120 0.95186 1.01781 1.02632 1.21189 0.93958 0.97565 0.82588 0.89054 1.46090 1.66862 1.13679 1.09985 1.16981 0.77997 0.86362 0.81579 1.90866 1.50379 1.14468 1.84226 1.20786 1.11252 0.83238 0.97329 1.21268 1.02275 1.00224 0.90256 1.21126 1.05363 0.90181 1.00171 1.16832 1.10093 0.89437 0.85575 1.22479 1.00854 0.93661 0.86572 1.76200 1.16680 0.97551 1.24478 1.78914 1.13151 1.21925 0.89767 1.47760 1.41852 1.05259 1.12235 0.66744 1.74996 1.18882 0.98046 1.21336 1.41904 1.49495 1.09992 1.09744 0.73624 1.23882 0.97614 1.00817 0.94536 1.22230 0.89638 0.93932 0.89148 1.45983 1.16191 1.72038 0.99590 1.19020 0.98367 1.34905 0.82781 0.90327 1.24782 0.97053 1.01142 0.97500 1.69804 1.15166 1.47434 1.24444 0.86126 0.78771 0.77792 0.83107 1.21609 1.21605 1.20656 1.22540 0.93015 0.97680 0.86929 0.92782 0.92599 0.90841 0.77382 0.82369 0.82770 0.89303 0.95311 0.90644 0.93610 0.94235 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.46 37.15 0.35 -1.80 16 2 C 0.15 2.24 2.29 -67.93 -0.16 2.09 16 3 H 0.09 1.56 7.49 -51.93 -0.39 1.18 16 4 N -0.72 -8.88 4.94 -55.13 -0.27 -9.15 16 5 C 0.58 7.88 7.75 -12.88 -0.10 7.78 16 6 O -0.52 -8.85 16.54 5.18 0.09 -8.76 16 7 C -0.01 -0.10 7.04 -81.95 -0.58 -0.67 16 8 C -0.11 -1.17 10.60 -39.23 -0.42 -1.59 16 9 C -0.14 -1.26 10.79 -39.33 -0.42 -1.68 16 10 C 0.10 0.96 7.12 -82.06 -0.58 0.37 16 11 C 0.24 2.34 8.21 -156.24 -1.28 1.05 16 12 N -0.28 -2.83 12.54 32.09 0.40 -2.42 16 13 N -0.04 -0.36 13.46 60.35 0.81 0.46 16 14 N -0.22 -1.22 7.90 60.35 0.48 -0.74 16 15 H 0.48 0.23 8.96 -340.33 -3.05 -2.82 16 16 N -0.28 -2.20 12.39 32.10 0.40 -1.80 16 17 N -0.51 -4.79 6.03 -5.81 -0.04 -4.82 16 18 H 0.42 3.26 8.17 -40.82 -0.33 2.93 16 19 C -0.15 -2.58 3.35 -89.69 -0.30 -2.88 16 20 C 0.18 4.03 6.90 -2.84 -0.02 4.01 16 21 N -0.61 -15.62 3.70 -177.73 -0.66 -16.28 16 22 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 23 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.92 -27.28 11.39 55.49 0.63 -26.65 16 26 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 C 0.12 2.48 8.38 -2.97 -0.02 2.46 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.02 7.99 -51.93 -0.42 0.61 16 34 H 0.39 3.92 7.71 -40.82 -0.31 3.61 16 35 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 39 H 0.08 1.90 7.16 -51.93 -0.37 1.53 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -35.57 366.29 -9.25 -44.82 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.79 Total: 0.28 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -3.79 Total: 2.35 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 1.76 Total: -61.42 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.57 -9.25 -44.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589943562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.438 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds