Wall clock time and date at job start Tue Mar 31 2020 17:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47264 * 2 1 4 4 N 1.46501 * 109.47478 * 239.99594 * 2 1 3 5 5 C 1.34779 * 119.99698 * 85.00105 * 4 2 1 6 6 O 1.21705 * 120.00394 * 0.02562 * 5 4 2 7 7 C 1.46607 * 119.99580 * 180.02562 * 5 4 2 8 8 C 1.38024 * 126.00614 * 179.69288 * 7 5 4 9 9 C 1.39398 * 107.42861 * 179.87281 * 8 7 5 10 10 C 1.37744 * 107.65335 * 0.38465 * 9 8 7 11 11 C 1.47917 * 125.82068 * 179.78166 * 10 9 8 12 12 N 1.34208 * 126.70016 * 179.66144 * 11 10 9 13 13 N 1.28991 * 107.24671 * 179.89416 * 12 11 10 14 14 N 1.28720 * 108.99719 * 0.37260 * 13 12 11 15 15 H 0.96998 * 125.31364 * 179.79743 * 14 13 12 16 16 N 1.28874 * 109.36431 * 359.76330 * 14 13 12 17 17 N 1.36386 * 108.35942 * 359.75897 * 10 9 8 18 18 H 0.97000 * 125.71714 * 179.97438 * 17 10 9 19 19 C 1.53007 * 109.47165 * 119.99423 * 2 1 3 20 20 C 1.53943 * 113.73967 * 282.00108 * 19 2 1 21 21 N 1.47812 * 86.03288 * 222.07840 * 20 19 2 22 22 C 1.36941 * 134.45949 * 204.64456 * 21 20 19 23 23 H 1.07998 * 120.00363 * 179.86974 * 22 21 20 24 24 C 1.38817 * 119.99599 * 359.86590 * 22 21 20 25 25 N 1.31619 * 119.99967 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99796 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46990 * 90.00397 * 26 24 22 28 28 H 1.48496 * 109.47393 * 210.00324 * 26 24 22 29 29 H 1.48504 * 109.47588 * 330.00800 * 26 24 22 30 30 C 1.47584 * 91.05227 * 24.55205 * 21 20 19 31 31 H 1.09003 * 109.47358 * 175.81044 * 1 2 3 32 32 H 1.09001 * 109.46924 * 55.81369 * 1 2 3 33 33 H 1.08995 * 109.47430 * 295.82008 * 1 2 3 34 34 H 0.96998 * 119.99614 * 265.00160 * 4 2 1 35 35 H 1.08003 * 126.28606 * 0.02562 * 8 7 5 36 36 H 1.08002 * 126.17097 * 180.13649 * 9 8 7 37 37 H 1.09000 * 112.94115 * 53.58853 * 19 2 1 38 38 H 1.08997 * 113.77139 * 336.34419 * 20 19 2 39 39 H 1.09007 * 113.76732 * 107.74921 * 20 19 2 40 40 H 0.97001 * 119.99789 * 179.97438 * 25 24 22 41 41 H 1.08998 * 113.77081 * 221.14893 * 30 21 20 42 42 H 1.08993 * 113.87010 * 89.76485 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8581 1.1626 -2.4117 7 6 2.6354 -0.7097 -3.5542 8 6 2.8085 -0.1467 -4.8024 9 6 3.2899 -1.1452 -5.6477 10 6 3.3957 -2.3028 -4.9088 11 6 3.8633 -3.6123 -5.4135 12 7 3.9792 -4.7485 -4.7087 13 7 4.4164 -5.6556 -5.5149 14 7 4.5840 -5.1351 -6.6801 15 1 4.9079 -5.6066 -7.4635 16 7 4.2534 -3.8900 -6.6435 17 7 2.9963 -2.0358 -3.6324 18 1 2.9703 -2.6736 -2.9020 19 6 2.0400 -0.7212 1.2494 20 6 1.9703 0.1317 2.5291 21 7 3.3066 -0.4161 2.8439 22 6 4.0150 -0.6121 3.9993 23 1 5.0033 -1.0456 3.9599 24 6 3.4627 -0.2533 5.2213 25 7 2.2580 0.2747 5.2694 26 14 4.4287 -0.5212 6.7975 27 1 5.2412 0.6866 7.0914 28 1 3.4874 -0.7694 7.9189 29 1 5.3256 -1.6937 6.6353 30 6 3.5697 -0.6692 1.4139 31 1 -0.3634 -1.0249 -0.0751 32 1 -0.3633 0.5774 -0.8501 33 1 -0.3634 0.4476 0.9250 34 1 2.2490 -1.6318 -1.1524 35 1 2.6100 0.8797 -5.0738 36 1 3.5321 -1.0325 -6.6941 37 1 1.6198 -1.7203 1.3645 38 1 1.9686 1.2055 2.3419 39 1 1.1910 -0.1816 3.2239 40 1 1.8719 0.5250 6.1233 41 1 4.0650 -1.6206 1.2200 42 1 4.0390 0.1677 0.8970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589943562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:39 Heat of formation + Delta-G solvation = 160.749606 kcal Electronic energy + Delta-G solvation = -27050.602985 eV Core-core repulsion = 23070.328336 eV Total energy + Delta-G solvation = -3980.274649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.50808 -42.35105 -40.69891 -39.45080 -36.25246 -35.42744 -34.49181 -34.16432 -32.51615 -31.84576 -30.11095 -29.30058 -26.67349 -25.96985 -25.69763 -25.40605 -23.58520 -22.39920 -21.45173 -21.31777 -20.85955 -20.41348 -19.33884 -18.76406 -18.21132 -17.38267 -17.07276 -16.83734 -16.27276 -15.83817 -15.57115 -15.42199 -15.07390 -15.01456 -14.85221 -14.60274 -14.13523 -13.90337 -13.69582 -13.39000 -13.26802 -13.15029 -13.07995 -12.96123 -12.68063 -12.48171 -12.38464 -12.26839 -12.05199 -12.00821 -11.81509 -11.61182 -11.26011 -11.10840 -10.86898 -10.18014 -10.11376 -9.17574 -8.92239 -7.90980 -5.24288 -0.24471 0.15688 0.91583 1.22074 1.45047 1.47079 1.55581 1.84455 1.91584 2.07104 2.32866 2.46983 2.64239 3.18877 3.29092 3.38508 3.64282 3.87203 3.96351 4.06629 4.22906 4.26120 4.30992 4.40883 4.45713 4.57590 4.76183 4.83254 4.86905 4.93577 4.95215 5.07739 5.16454 5.25132 5.32796 5.43349 5.53568 5.54736 5.58174 5.65078 5.76208 5.94217 6.16297 6.51645 6.92067 7.03938 7.12355 7.60433 8.56052 9.25998 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.002390 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.668718 B =11712.007595 C =13062.642760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.068 0.932 4 N -0.706 5.706 5 C 0.589 3.411 6 O -0.563 6.563 7 C -0.026 4.026 8 C -0.115 4.115 9 C -0.137 4.137 10 C 0.103 3.897 11 C 0.231 3.769 12 N -0.299 5.299 13 N -0.052 5.052 14 N -0.194 5.194 15 H 0.497 0.503 16 N -0.275 5.275 17 N -0.507 5.507 18 H 0.431 0.569 19 C -0.110 4.110 20 C 0.171 3.829 21 N -0.644 5.644 22 C -0.236 4.236 23 H 0.082 0.918 24 C -0.068 4.068 25 N -0.953 5.953 26 Si 0.978 3.022 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.267 1.267 30 C 0.126 3.874 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.106 0.894 38 H 0.013 0.987 39 H 0.047 0.953 40 H 0.249 0.751 41 H 0.060 0.940 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -10.718 -28.610 30.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.086 0.914 4 N -0.357 5.357 5 C 0.376 3.624 6 O -0.442 6.442 7 C -0.143 4.143 8 C -0.141 4.141 9 C -0.165 4.165 10 C -0.017 4.017 11 C -0.049 4.049 12 N -0.172 5.172 13 N -0.047 5.047 14 N -0.046 5.046 15 H 0.357 0.643 16 N -0.129 5.129 17 N -0.104 5.104 18 H 0.272 0.728 19 C -0.130 4.130 20 C 0.045 3.955 21 N -0.371 5.371 22 C -0.365 4.365 23 H 0.100 0.900 24 C -0.261 4.261 25 N -0.602 5.602 26 Si 0.806 3.194 27 H -0.216 1.216 28 H -0.219 1.219 29 H -0.192 1.192 30 C 0.001 3.999 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.244 0.756 35 H 0.180 0.820 36 H 0.193 0.807 37 H 0.124 0.876 38 H 0.031 0.969 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.051 -10.661 -28.060 30.036 hybrid contribution 0.665 -0.289 1.167 1.374 sum 1.716 -10.950 -26.893 29.088 Atomic orbital electron populations 1.22055 0.93819 1.02972 1.02258 1.20820 0.94873 0.96084 0.82405 0.91425 1.45848 1.66593 1.14253 1.08988 1.17192 0.77181 0.85888 0.82094 1.90847 1.52214 1.16213 1.84890 1.20389 1.13184 0.84066 0.96640 1.21463 1.01721 1.00764 0.90164 1.21349 1.04745 0.89390 1.00989 1.17012 1.09328 0.89774 0.85569 1.22495 1.01743 0.93582 0.87060 1.76181 1.17643 0.97984 1.25412 1.78866 1.13578 1.21779 0.90451 1.47837 1.39857 1.04590 1.12348 0.64310 1.74966 1.18459 0.98803 1.20631 1.41820 1.49102 1.09431 1.10083 0.72837 1.23466 0.95910 1.00460 0.93122 1.22137 0.88139 0.93821 0.91363 1.46418 1.17216 1.72304 1.01120 1.19421 0.98676 1.34181 0.84181 0.90009 1.25632 0.98145 1.01625 1.00675 1.69992 1.16662 1.48818 1.24685 0.85085 0.77413 0.77907 0.78965 1.21584 1.21874 1.19204 1.22687 0.94886 0.98414 0.83911 0.90821 0.92604 0.91578 0.75649 0.81988 0.80700 0.87628 0.96869 0.93437 0.94199 0.92209 0.94904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.46 71.98 0.68 -3.32 16 2 C 0.16 4.75 2.29 44.99 0.10 4.85 16 3 H 0.07 2.35 7.49 -2.38 -0.02 2.33 16 4 N -0.71 -16.58 4.94 -446.55 -2.21 -18.78 16 5 C 0.59 15.41 7.75 86.43 0.67 16.08 16 6 O -0.56 -19.05 16.54 -4.36 -0.07 -19.13 16 7 C -0.03 -0.54 7.04 40.36 0.28 -0.26 16 8 C -0.11 -2.19 10.60 22.50 0.24 -1.95 16 9 C -0.14 -2.16 10.79 22.43 0.24 -1.92 16 10 C 0.10 1.77 7.12 40.88 0.29 2.06 16 11 C 0.23 3.93 8.21 137.11 1.13 5.06 16 12 N -0.30 -5.60 12.54 -52.40 -0.66 -6.26 16 13 N -0.05 -0.77 13.46 37.02 0.50 -0.27 16 14 N -0.19 -1.62 7.90 37.02 0.29 -1.32 16 15 H 0.50 -0.93 8.96 -347.50 -3.11 -4.05 16 16 N -0.28 -3.61 12.39 -52.35 -0.65 -4.26 16 17 N -0.51 -8.56 6.03 -172.30 -1.04 -9.60 16 18 H 0.43 5.84 8.17 -92.71 -0.76 5.08 16 19 C -0.11 -3.74 3.35 -10.13 -0.03 -3.78 16 20 C 0.17 8.03 6.90 86.44 0.60 8.62 16 21 N -0.64 -33.15 3.70 -716.23 -2.65 -35.80 16 22 C -0.24 -13.40 10.70 84.03 0.90 -12.50 16 23 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 24 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 25 N -0.95 -57.87 11.39 21.65 0.25 -57.62 16 26 Si 0.98 46.14 29.55 68.60 2.03 48.16 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 28 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 29 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 30 C 0.13 4.91 8.38 86.48 0.72 5.63 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.83 7.99 -2.39 -0.02 1.81 16 34 H 0.41 7.25 7.71 -92.71 -0.71 6.54 16 35 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.01 0.66 8.03 -2.39 -0.02 0.64 16 39 H 0.05 2.48 7.16 -2.38 -0.02 2.46 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.03 1.31 8.10 -2.39 -0.02 1.29 16 Total: -1.00 -77.67 366.29 -1.40 -79.07 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -3.48 Total: 10.65 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 6.29 Total: 15.15 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -6.17 Total: -133.91 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.07 Total: -19.13 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.67 -1.40 -79.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589943562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.819 kcal (2) G-P(sol) polarization free energy of solvation -77.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds