Wall clock time and date at job start Tue Mar 31 2020 17:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21689 * 120.00183 * 0.02562 * 5 4 2 7 7 C 1.46726 * 119.99898 * 180.02562 * 5 4 2 8 8 C 1.36667 * 126.02446 * 179.71861 * 7 5 4 9 9 C 1.40804 * 107.05530 * 179.85372 * 8 7 5 10 10 C 1.48498 * 126.28490 * 180.19351 * 9 8 7 11 11 N 1.34038 * 126.67456 * 359.96760 * 10 9 8 12 12 N 1.28989 * 107.27053 * 179.89537 * 11 10 9 13 13 N 1.28727 * 108.94005 * 0.37826 * 12 11 10 14 14 H 0.96999 * 125.34231 * 179.80332 * 13 12 11 15 15 N 1.28877 * 109.31550 * 359.75722 * 13 12 11 16 16 C 1.36570 * 107.42871 * 0.41147 * 9 8 7 17 17 N 1.34841 * 108.61427 * 359.74729 * 16 9 8 18 18 H 0.96993 * 125.52516 * 180.02562 * 17 16 9 19 19 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 20 20 C 1.53504 * 114.20785 * 300.00220 * 19 2 1 21 21 N 1.47069 * 87.98363 * 220.34571 * 20 19 2 22 22 C 1.36941 * 136.05552 * 207.07801 * 21 20 19 23 23 H 1.08000 * 119.99396 * 7.56018 * 22 21 20 24 24 C 1.38806 * 119.99993 * 187.55101 * 22 21 20 25 25 N 1.31621 * 119.99759 * 174.37714 * 24 22 21 26 26 Si 1.86799 * 119.99972 * 354.38427 * 24 22 21 27 27 H 1.48501 * 109.46963 * 174.94900 * 26 24 22 28 28 H 1.48498 * 109.47184 * 294.94894 * 26 24 22 29 29 H 1.48507 * 109.47082 * 54.95224 * 26 24 22 30 30 C 1.47064 * 87.88742 * 27.34488 * 21 20 19 31 31 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 32 32 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 33 33 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 34 34 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 35 35 H 1.08002 * 126.47205 * 359.96942 * 8 7 5 36 36 H 1.07994 * 125.68803 * 179.72512 * 16 9 8 37 37 H 1.09002 * 113.41395 * 73.19962 * 19 2 1 38 38 H 1.08997 * 113.46758 * 105.56146 * 20 19 2 39 39 H 1.09000 * 113.51898 * 335.13170 * 20 19 2 40 40 H 0.96993 * 120.00423 * 354.88754 * 25 24 22 41 41 H 1.08993 * 113.47012 * 87.43421 * 30 21 20 42 42 H 1.09000 * 113.46758 * 217.87997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8580 1.1625 -2.4117 7 6 2.6357 -0.7101 -3.5552 8 6 2.8076 -0.1529 -4.7912 9 6 3.2939 -1.1676 -5.6377 10 6 3.6319 -1.0248 -7.0766 11 7 3.5325 0.0891 -7.8156 12 7 3.9237 -0.2066 -9.0086 13 7 4.2523 -1.4507 -9.0442 14 1 4.5774 -1.9231 -9.8266 15 7 4.0824 -1.9701 -7.8770 16 6 3.3931 -2.3085 -4.8935 17 7 2.9962 -2.0366 -3.6339 18 1 2.9693 -2.6723 -2.9018 19 6 2.0401 -0.7212 1.2493 20 6 1.5899 -0.0845 2.5715 21 7 2.9390 -0.3444 3.0960 22 6 3.4927 -0.5600 4.3298 23 1 2.8558 -0.6814 5.1935 24 6 4.8722 -0.6227 4.4701 25 7 5.4081 -0.7189 5.6684 26 14 5.9681 -0.5704 2.9583 27 1 7.3914 -0.5289 3.3799 28 1 5.7314 -1.7821 2.1331 29 1 5.6528 0.6416 2.1600 30 6 3.4330 -0.2640 1.7131 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0278 0.0005 34 1 2.2491 -1.6318 -1.1525 35 1 2.6097 0.8726 -5.0663 36 1 3.7324 -3.2682 -5.2540 37 1 1.9119 -1.8028 1.2077 38 1 0.8095 -0.6492 3.0816 39 1 1.3545 0.9763 2.4855 40 1 4.8450 -0.6714 6.4568 41 1 3.6837 0.7494 1.3999 42 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589943987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:48 Heat of formation + Delta-G solvation = 196.983468 kcal Electronic energy + Delta-G solvation = -27007.525797 eV Core-core repulsion = 23028.822366 eV Total energy + Delta-G solvation = -3978.703431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.65051 -41.79911 -39.72579 -38.44259 -35.16800 -34.64635 -33.84411 -32.50183 -31.34116 -31.00458 -29.32081 -27.79332 -25.53343 -24.97718 -24.58363 -23.99505 -22.79027 -21.02979 -20.63040 -20.37348 -19.93930 -19.21753 -18.51373 -17.51242 -17.35518 -16.37347 -16.11561 -15.42261 -15.36934 -15.15796 -14.37124 -14.26478 -14.13416 -13.86670 -13.69885 -13.62787 -13.20282 -13.00511 -12.86190 -12.38621 -12.35288 -11.95914 -11.88363 -11.66473 -11.57079 -11.37823 -11.33650 -10.99251 -10.72048 -10.40425 -10.37630 -10.08475 -9.36657 -9.22353 -9.17499 -9.03255 -8.93974 -8.58595 -7.20297 -6.32614 -3.26940 0.76390 1.15756 1.40172 1.98766 2.59880 2.76033 2.96604 3.25056 3.34869 3.42355 3.61266 3.61664 3.96019 4.54405 4.56198 4.65640 4.67893 4.83808 4.99859 5.00819 5.07983 5.24456 5.37395 5.43242 5.50564 5.55678 5.67899 5.73775 5.80870 5.95604 6.08431 6.10692 6.18277 6.20007 6.22144 6.25222 6.33578 6.36201 6.50692 6.84964 6.85823 7.08172 7.38154 7.94319 8.06549 8.20383 8.94235 9.46508 10.32847 11.17208 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.002378 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.390703 B =11773.222400 C =12731.440333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.153 3.847 3 H 0.094 0.906 4 N -0.721 5.721 5 C 0.588 3.412 6 O -0.523 6.523 7 C -0.046 4.046 8 C -0.062 4.062 9 C -0.122 4.122 10 C 0.264 3.736 11 N -0.269 5.269 12 N -0.052 5.052 13 N -0.232 5.232 14 H 0.474 0.526 15 N -0.308 5.308 16 C 0.082 3.918 17 N -0.529 5.529 18 H 0.425 0.575 19 C -0.141 4.141 20 C 0.134 3.866 21 N -0.629 5.629 22 C -0.304 4.304 23 H 0.083 0.917 24 C -0.026 4.026 25 N -0.934 5.934 26 Si 1.071 2.929 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.286 1.286 30 C 0.103 3.897 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.393 0.607 35 H 0.160 0.840 36 H 0.184 0.816 37 H 0.097 0.903 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.261 0.739 41 H 0.046 0.954 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 -6.892 -28.173 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.112 0.888 4 N -0.371 5.371 5 C 0.375 3.625 6 O -0.399 6.399 7 C -0.157 4.157 8 C -0.089 4.089 9 C -0.132 4.132 10 C -0.016 4.016 11 N -0.142 5.142 12 N -0.048 5.048 13 N -0.078 5.078 14 H 0.327 0.673 15 N -0.160 5.160 16 C -0.060 4.060 17 N -0.125 5.125 18 H 0.263 0.737 19 C -0.161 4.161 20 C 0.007 3.993 21 N -0.357 5.357 22 C -0.430 4.430 23 H 0.101 0.899 24 C -0.224 4.224 25 N -0.576 5.576 26 Si 0.904 3.096 27 H -0.222 1.222 28 H -0.223 1.223 29 H -0.213 1.213 30 C -0.023 4.023 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.178 0.822 36 H 0.201 0.799 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.878 -5.867 -28.792 29.786 hybrid contribution -1.245 -1.263 0.732 1.918 sum -6.123 -7.129 -28.060 29.592 Atomic orbital electron populations 1.22127 0.94975 1.02014 1.02591 1.21072 0.94053 0.97592 0.82436 0.88830 1.46008 1.67517 1.13641 1.09917 1.16982 0.77722 0.86314 0.81532 1.90868 1.50218 1.14549 1.84256 1.20209 1.14413 0.84250 0.96859 1.21026 0.98607 0.99700 0.89566 1.16337 1.14563 0.95219 0.87075 1.22791 0.98363 0.85337 0.95137 1.76135 1.17840 1.24016 0.96241 1.78928 1.11904 0.97782 1.16142 1.47670 1.42611 1.07140 1.10367 0.67260 1.74896 1.22226 1.26235 0.92659 1.21871 1.01064 0.99629 0.83459 1.41848 1.49868 1.09935 1.10806 0.73683 1.23575 0.99161 1.00183 0.93148 1.22255 0.90079 0.97233 0.89687 1.45976 1.04061 1.83714 1.01915 1.20157 0.92133 1.47656 0.83071 0.89930 1.25726 0.94255 0.99296 1.03172 1.70911 1.37312 1.52142 0.97197 0.83698 0.75777 0.76095 0.74034 1.22214 1.22337 1.21340 1.22843 0.94624 0.98576 0.86251 0.91088 0.92314 0.92605 0.77384 0.82208 0.79939 0.88490 0.93477 0.94186 0.92909 0.93628 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.29 37.16 0.35 -1.47 16 2 C 0.15 2.00 2.47 -67.93 -0.17 1.83 16 3 H 0.09 1.43 7.32 -51.93 -0.38 1.05 16 4 N -0.72 -7.93 5.07 -55.10 -0.28 -8.21 16 5 C 0.59 7.44 7.75 -12.83 -0.10 7.34 16 6 O -0.52 -8.58 16.53 5.20 0.09 -8.50 16 7 C -0.05 -0.47 7.00 -82.38 -0.58 -1.05 16 8 C -0.06 -0.68 10.56 -39.18 -0.41 -1.10 16 9 C -0.12 -1.18 6.10 -105.30 -0.64 -1.82 16 10 C 0.26 2.73 8.18 -156.30 -1.28 1.45 16 11 N -0.27 -3.13 12.54 32.16 0.40 -2.73 16 12 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 13 N -0.23 -1.46 7.90 60.35 0.48 -0.98 16 14 H 0.47 0.62 8.96 -340.37 -3.05 -2.43 16 15 N -0.31 -2.57 12.39 32.18 0.40 -2.17 16 16 C 0.08 0.56 11.84 -16.83 -0.20 0.36 16 17 N -0.53 -3.51 5.95 -9.54 -0.06 -3.56 16 18 H 0.42 1.53 8.16 -40.82 -0.33 1.20 16 19 C -0.14 -2.16 3.67 -89.96 -0.33 -2.49 16 20 C 0.13 2.48 7.33 -8.50 -0.06 2.42 16 21 N -0.63 -15.11 3.69 -184.57 -0.68 -15.79 16 22 C -0.30 -8.70 11.08 -15.06 -0.17 -8.86 16 23 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 24 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 25 N -0.93 -29.42 13.70 55.49 0.76 -28.66 16 26 Si 1.07 26.71 25.16 -169.99 -4.28 22.44 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 28 H -0.29 -6.81 6.51 56.52 0.37 -6.44 16 29 H -0.29 -6.78 6.21 56.52 0.35 -6.43 16 30 C 0.10 2.08 5.27 -8.36 -0.04 2.03 16 31 H 0.07 0.79 7.48 -51.93 -0.39 0.41 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.39 3.16 7.70 -40.82 -0.31 2.85 16 35 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 41 H 0.05 0.95 7.44 -51.93 -0.39 0.56 16 42 H 0.05 1.05 4.73 -51.93 -0.25 0.80 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -38.18 357.63 -8.42 -46.60 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.72 Total: -1.94 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.73 Total: -2.21 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: 1.83 Total: -61.78 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 26.71 SS G_CDS: -4.28 Total: 22.44 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.18 -8.42 -46.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589943987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.580 kcal (2) G-P(sol) polarization free energy of solvation -38.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds