Wall clock time and date at job start Tue Mar 31 2020 17:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21689 * 120.00183 * 0.02562 * 5 4 2 7 7 C 1.46726 * 119.99898 * 180.02562 * 5 4 2 8 8 C 1.36667 * 126.02446 * 179.71861 * 7 5 4 9 9 C 1.40804 * 107.05530 * 179.85372 * 8 7 5 10 10 C 1.48498 * 126.28490 * 180.19351 * 9 8 7 11 11 N 1.34038 * 126.67456 * 359.96760 * 10 9 8 12 12 N 1.28989 * 107.27053 * 179.89537 * 11 10 9 13 13 N 1.28727 * 108.94005 * 0.37826 * 12 11 10 14 14 H 0.96999 * 125.34231 * 179.80332 * 13 12 11 15 15 N 1.28877 * 109.31550 * 359.75722 * 13 12 11 16 16 C 1.36570 * 107.42871 * 0.41147 * 9 8 7 17 17 N 1.34841 * 108.61427 * 359.74729 * 16 9 8 18 18 H 0.96993 * 125.52516 * 180.02562 * 17 16 9 19 19 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 20 20 C 1.53504 * 114.20785 * 300.00220 * 19 2 1 21 21 N 1.47069 * 87.98363 * 220.34571 * 20 19 2 22 22 C 1.36941 * 136.05552 * 207.07801 * 21 20 19 23 23 H 1.08000 * 119.99396 * 7.56018 * 22 21 20 24 24 C 1.38806 * 119.99993 * 187.55101 * 22 21 20 25 25 N 1.31621 * 119.99759 * 174.37714 * 24 22 21 26 26 Si 1.86799 * 119.99972 * 354.38427 * 24 22 21 27 27 H 1.48501 * 109.46963 * 174.94900 * 26 24 22 28 28 H 1.48498 * 109.47184 * 294.94894 * 26 24 22 29 29 H 1.48507 * 109.47082 * 54.95224 * 26 24 22 30 30 C 1.47064 * 87.88742 * 27.34488 * 21 20 19 31 31 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 32 32 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 33 33 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 34 34 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 35 35 H 1.08002 * 126.47205 * 359.96942 * 8 7 5 36 36 H 1.07994 * 125.68803 * 179.72512 * 16 9 8 37 37 H 1.09002 * 113.41395 * 73.19962 * 19 2 1 38 38 H 1.08997 * 113.46758 * 105.56146 * 20 19 2 39 39 H 1.09000 * 113.51898 * 335.13170 * 20 19 2 40 40 H 0.96993 * 120.00423 * 354.88754 * 25 24 22 41 41 H 1.08993 * 113.47012 * 87.43421 * 30 21 20 42 42 H 1.09000 * 113.46758 * 217.87997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8580 1.1625 -2.4117 7 6 2.6357 -0.7101 -3.5552 8 6 2.8076 -0.1529 -4.7912 9 6 3.2939 -1.1676 -5.6377 10 6 3.6319 -1.0248 -7.0766 11 7 3.5325 0.0891 -7.8156 12 7 3.9237 -0.2066 -9.0086 13 7 4.2523 -1.4507 -9.0442 14 1 4.5774 -1.9231 -9.8266 15 7 4.0824 -1.9701 -7.8770 16 6 3.3931 -2.3085 -4.8935 17 7 2.9962 -2.0366 -3.6339 18 1 2.9693 -2.6723 -2.9018 19 6 2.0401 -0.7212 1.2493 20 6 1.5899 -0.0845 2.5715 21 7 2.9390 -0.3444 3.0960 22 6 3.4927 -0.5600 4.3298 23 1 2.8558 -0.6814 5.1935 24 6 4.8722 -0.6227 4.4701 25 7 5.4081 -0.7189 5.6684 26 14 5.9681 -0.5704 2.9583 27 1 7.3914 -0.5289 3.3799 28 1 5.7314 -1.7821 2.1331 29 1 5.6528 0.6416 2.1600 30 6 3.4330 -0.2640 1.7131 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0278 0.0005 34 1 2.2491 -1.6318 -1.1525 35 1 2.6097 0.8726 -5.0663 36 1 3.7324 -3.2682 -5.2540 37 1 1.9119 -1.8028 1.2077 38 1 0.8095 -0.6492 3.0816 39 1 1.3545 0.9763 2.4855 40 1 4.8450 -0.6714 6.4568 41 1 3.6837 0.7494 1.3999 42 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589943987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:47 Heat of formation + Delta-G solvation = 165.425362 kcal Electronic energy + Delta-G solvation = -27008.894259 eV Core-core repulsion = 23028.822366 eV Total energy + Delta-G solvation = -3980.071893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.30687 -42.49946 -40.92740 -39.73948 -36.36290 -35.32384 -34.61521 -34.43677 -32.35950 -31.82821 -30.18044 -29.42578 -27.06670 -25.68996 -25.58959 -25.00241 -23.96117 -22.31876 -21.45439 -21.25092 -20.98467 -20.11452 -19.54580 -19.34369 -18.00763 -17.54220 -17.08979 -16.90535 -16.30820 -15.91230 -15.86273 -15.42930 -15.13876 -15.02881 -14.90057 -14.66022 -14.44820 -14.21732 -13.65774 -13.55930 -13.28888 -13.22043 -13.11332 -13.04044 -12.52970 -12.35252 -12.33867 -12.12226 -12.03761 -12.02936 -11.71260 -11.35859 -11.15347 -11.09143 -10.84363 -10.19105 -9.90090 -9.25464 -9.23191 -8.62005 -5.48325 0.13289 0.43293 0.64639 1.35330 1.47609 1.54846 1.65838 1.95655 2.03618 2.10914 2.38281 2.53012 2.93557 2.98178 3.17921 3.28985 3.45377 3.82658 3.90730 4.20735 4.22187 4.29456 4.34888 4.39484 4.47171 4.56847 4.58929 4.67577 4.69827 4.80609 4.86861 4.89643 5.00718 5.07325 5.19684 5.31215 5.39502 5.45996 5.52248 5.66137 5.73326 5.94670 6.36455 6.55943 6.69369 7.15545 7.27046 7.32110 8.27082 8.89403 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.002378 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.390703 B =11773.222400 C =12731.440333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.071 0.929 4 N -0.708 5.708 5 C 0.590 3.410 6 O -0.569 6.569 7 C -0.058 4.058 8 C -0.077 4.077 9 C -0.147 4.147 10 C 0.252 3.748 11 N -0.309 5.309 12 N -0.064 5.064 13 N -0.204 5.204 14 H 0.493 0.507 15 N -0.300 5.300 16 C 0.118 3.882 17 N -0.510 5.510 18 H 0.442 0.558 19 C -0.101 4.101 20 C 0.129 3.871 21 N -0.662 5.662 22 C -0.289 4.289 23 H 0.051 0.949 24 C -0.088 4.088 25 N -0.971 5.971 26 Si 1.109 2.891 27 H -0.307 1.307 28 H -0.261 1.261 29 H -0.271 1.271 30 C 0.092 3.908 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.411 0.589 35 H 0.139 0.861 36 H 0.223 0.777 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.246 0.754 41 H 0.041 0.959 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 -9.494 -31.054 33.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.056 3.944 3 H 0.089 0.911 4 N -0.359 5.359 5 C 0.378 3.622 6 O -0.448 6.448 7 C -0.170 4.170 8 C -0.105 4.105 9 C -0.157 4.157 10 C -0.028 4.028 11 N -0.181 5.181 12 N -0.059 5.059 13 N -0.054 5.054 14 H 0.352 0.648 15 N -0.153 5.153 16 C -0.026 4.026 17 N -0.106 5.106 18 H 0.285 0.715 19 C -0.120 4.120 20 C 0.003 3.997 21 N -0.391 5.391 22 C -0.417 4.417 23 H 0.069 0.931 24 C -0.280 4.280 25 N -0.617 5.617 26 Si 0.935 3.065 27 H -0.235 1.235 28 H -0.187 1.187 29 H -0.197 1.197 30 C -0.033 4.033 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.248 0.752 35 H 0.157 0.843 36 H 0.239 0.761 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.309 -8.515 -31.708 33.258 hybrid contribution -1.214 -0.476 1.566 2.038 sum -6.523 -8.991 -30.142 32.123 Atomic orbital electron populations 1.22065 0.93253 1.03351 1.02403 1.20811 0.95220 0.96226 0.82145 0.91120 1.45785 1.66980 1.14383 1.08784 1.17208 0.76962 0.85797 0.82238 1.90848 1.52306 1.16653 1.85014 1.19701 1.15923 0.85812 0.95517 1.20989 0.99346 0.99515 0.90641 1.16462 1.16080 0.95964 0.87151 1.22963 0.98818 0.85353 0.95656 1.76115 1.19469 1.25386 0.97147 1.78864 1.12527 0.98856 1.15649 1.47748 1.40601 1.06437 1.10649 0.64843 1.74849 1.21919 1.25625 0.92875 1.22400 0.97806 0.99893 0.82537 1.41773 1.48631 1.08739 1.11500 0.71550 1.23260 0.94887 1.01401 0.92486 1.22494 0.88002 0.98163 0.91026 1.46120 1.07024 1.84125 1.01802 1.20035 0.91920 1.45267 0.84456 0.93079 1.27063 0.96303 0.99784 1.04829 1.71013 1.37409 1.55594 0.97674 0.83259 0.73339 0.78119 0.71737 1.23542 1.18670 1.19672 1.23045 0.97423 0.98566 0.84256 0.90918 0.92963 0.90470 0.75245 0.84273 0.76062 0.85935 0.92414 0.93418 0.94494 0.94116 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.29 71.98 0.67 -2.36 16 2 C 0.16 3.77 2.47 44.99 0.11 3.88 16 3 H 0.07 2.05 7.32 -2.39 -0.02 2.04 16 4 N -0.71 -13.40 5.07 -446.45 -2.27 -15.66 16 5 C 0.59 14.01 7.75 86.46 0.67 14.68 16 6 O -0.57 -18.67 16.53 -4.31 -0.07 -18.74 16 7 C -0.06 -1.08 7.00 40.08 0.28 -0.80 16 8 C -0.08 -1.67 10.56 22.53 0.24 -1.43 16 9 C -0.15 -2.57 6.10 -20.30 -0.12 -2.69 16 10 C 0.25 4.87 8.18 137.40 1.12 5.99 16 11 N -0.31 -7.12 12.54 -52.16 -0.65 -7.77 16 12 N -0.06 -1.14 13.47 37.02 0.50 -0.65 16 13 N -0.20 -2.14 7.90 37.02 0.29 -1.85 16 14 H 0.49 0.09 8.96 -347.54 -3.12 -3.03 16 15 N -0.30 -4.27 12.39 -52.11 -0.65 -4.91 16 16 C 0.12 1.12 11.84 83.84 0.99 2.11 16 17 N -0.51 -4.78 5.95 -184.11 -1.09 -5.88 16 18 H 0.44 0.99 8.16 -92.71 -0.76 0.23 16 19 C -0.10 -2.75 3.67 -10.37 -0.04 -2.79 16 20 C 0.13 4.48 7.33 83.18 0.61 5.09 16 21 N -0.66 -31.00 3.69 -737.86 -2.72 -33.72 16 22 C -0.29 -16.72 11.08 84.03 0.93 -15.79 16 23 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 24 C -0.09 -5.29 5.50 84.86 0.47 -4.82 16 25 N -0.97 -63.08 13.70 21.65 0.30 -62.78 16 26 Si 1.11 53.29 25.16 68.60 1.73 55.01 16 27 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 28 H -0.26 -10.94 6.51 99.48 0.65 -10.30 16 29 H -0.27 -12.16 6.21 99.48 0.62 -11.54 16 30 C 0.09 3.48 5.27 83.27 0.44 3.92 16 31 H 0.07 1.43 7.48 -2.39 -0.02 1.41 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.41 4.76 7.70 -92.71 -0.71 4.05 16 35 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.22 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 40 H 0.25 16.04 8.73 -92.71 -0.81 15.23 16 41 H 0.04 1.61 7.44 -2.39 -0.02 1.60 16 42 H 0.05 1.96 4.73 -2.39 -0.01 1.95 16 Total: -1.00 -87.38 357.63 -1.93 -89.31 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.66 Total: 2.65 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 6.37 Total: 4.99 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -6.29 Total: -133.22 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.07 Total: -18.74 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 1.73 Total: 55.01 kcal Total: -87.38 -1.93 -89.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589943987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.731 kcal (2) G-P(sol) polarization free energy of solvation -87.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds