Wall clock time and date at job start Tue Mar 31 2020 15:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47265 * 55.00364 * 3 2 1 5 5 C 1.50708 * 109.46831 * 174.99765 * 3 2 1 6 6 H 1.08005 * 119.99627 * 119.72768 * 5 3 2 7 7 C 1.37875 * 120.00165 * 300.00236 * 5 3 2 8 8 N 1.31510 * 119.99947 * 179.72121 * 7 5 3 9 9 Si 1.86800 * 119.99951 * 359.72673 * 7 5 3 10 10 H 1.48493 * 109.47591 * 89.99803 * 9 7 5 11 11 H 1.48497 * 109.46983 * 209.99986 * 9 7 5 12 12 H 1.48503 * 109.47095 * 329.99532 * 9 7 5 13 13 N 1.46494 * 109.47553 * 294.99876 * 3 2 1 14 14 C 1.34774 * 120.00042 * 85.00084 * 13 3 2 15 15 O 1.21585 * 119.99815 * 0.02562 * 14 13 3 16 16 N 1.34772 * 120.00374 * 180.02562 * 14 13 3 17 17 C 1.39315 * 120.00422 * 174.89843 * 16 14 13 18 18 C 1.39142 * 119.57207 * 185.11137 * 17 16 14 19 19 C 1.38118 * 119.21879 * 179.71082 * 18 17 16 20 20 C 1.50699 * 120.80148 * 180.28562 * 19 18 17 21 21 C 1.39906 * 118.39685 * 0.55505 * 19 18 17 22 22 C 1.48434 * 120.46069 * 179.71070 * 21 19 18 23 23 N 1.34051 * 126.67441 * 359.70364 * 22 21 19 24 24 N 1.28984 * 107.26606 * 179.83707 * 23 22 21 25 25 N 1.28724 * 108.94669 * 0.43534 * 24 23 22 26 26 H 0.97001 * 125.34058 * 179.76548 * 25 24 23 27 27 N 1.28873 * 109.32375 * 359.72185 * 25 24 23 28 28 C 1.39164 * 119.08046 * 359.72670 * 21 19 18 29 29 N 1.31791 * 120.68311 * 359.97438 * 28 21 19 30 30 H 1.09001 * 109.46940 * 300.00271 * 1 2 3 31 31 H 1.09007 * 109.46826 * 59.99542 * 1 2 3 32 32 H 1.08997 * 109.47106 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46642 * 240.00151 * 2 1 3 34 34 H 1.08997 * 109.46775 * 120.00487 * 2 1 3 35 35 H 0.97001 * 119.99988 * 180.02562 * 8 7 5 36 36 H 0.96999 * 120.00072 * 265.00476 * 13 3 2 37 37 H 0.97001 * 119.99969 * 354.90322 * 16 14 13 38 38 H 1.07997 * 120.38671 * 359.97438 * 18 17 16 39 39 H 1.09007 * 109.47110 * 270.27785 * 20 19 18 40 40 H 1.09005 * 109.47357 * 30.27066 * 20 19 18 41 41 H 1.08998 * 109.47305 * 150.27612 * 20 19 18 42 42 H 1.07994 * 119.65575 * 180.02562 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1475 1.8849 -0.6544 7 6 4.1433 0.8783 1.2280 8 7 5.4542 0.8749 1.3335 9 14 3.0961 0.1161 2.5740 10 1 2.8685 -1.3197 2.2711 11 1 3.7966 0.2420 3.8773 12 1 1.7904 0.8203 2.6439 13 7 1.6525 2.0975 -1.2517 14 6 0.4353 2.6645 -1.3669 15 8 -0.3411 2.6326 -0.4317 16 7 0.0785 3.2666 -2.5186 17 6 -1.2153 3.7588 -2.6758 18 6 -1.6064 4.2823 -3.9042 19 6 -2.8926 4.7627 -4.0536 20 6 -3.3559 5.3315 -5.3701 21 6 -3.7534 4.7139 -2.9518 22 6 -5.1433 5.2235 -3.0595 23 7 -5.7160 5.7641 -4.1442 24 7 -6.9268 6.0727 -3.8242 25 7 -7.1268 5.7575 -2.5923 26 1 -7.9562 5.8897 -2.1068 27 7 -6.0528 5.2378 -2.1053 28 6 -3.2882 4.1811 -1.7532 29 7 -2.0550 3.7271 -1.6527 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 5.8773 0.4764 2.1101 36 1 2.2720 2.1231 -1.9977 37 1 0.7226 3.3573 -3.2382 38 1 -0.9136 4.3087 -4.7323 39 1 -3.1484 6.4013 -5.3968 40 1 -2.8265 4.8383 -6.1854 41 1 -4.4276 5.1664 -5.4802 42 1 -3.9449 4.1384 -0.8969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590419081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:28 Heat of formation + Delta-G solvation = 155.476705 kcal Electronic energy + Delta-G solvation = -27594.013711 eV Core-core repulsion = 23613.510412 eV Total energy + Delta-G solvation = -3980.503299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.69023 -40.82867 -39.27347 -36.11305 -34.97500 -34.40569 -33.78752 -33.31208 -32.35444 -31.47301 -29.73056 -28.11951 -27.41876 -25.17624 -24.37855 -23.15000 -22.65698 -22.13683 -20.69768 -19.82647 -19.36805 -18.53318 -17.47983 -17.38877 -16.66527 -16.44052 -15.83869 -15.60216 -15.16667 -14.65860 -14.39756 -14.15956 -14.11751 -13.38513 -13.34896 -13.21745 -12.93916 -12.78018 -12.46001 -12.40843 -12.14470 -11.98297 -11.78736 -11.65378 -11.46383 -11.08124 -11.01209 -10.88623 -10.62101 -10.29020 -9.96574 -9.89104 -9.55969 -9.46188 -9.22164 -8.93409 -8.75204 -8.25574 -7.96945 -6.21051 -4.23582 0.48672 0.93206 1.17122 1.98916 2.14547 2.75843 3.25032 3.37109 3.43188 3.46867 3.54041 3.94525 4.01137 4.28925 4.32536 4.54617 4.63794 4.88672 5.01988 5.09065 5.13048 5.21336 5.35882 5.52117 5.54646 5.69475 5.87340 6.01507 6.07154 6.10376 6.20623 6.22682 6.24256 6.60050 6.69143 6.76047 6.85441 6.95626 7.07507 7.31366 7.38222 7.52217 7.89991 7.98543 8.29657 8.61426 8.78087 9.12878 9.40235 10.90893 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.002456 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.475747 B =11395.607179 C =12056.387913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.260 3.740 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.258 1.258 13 N -0.712 5.712 14 C 0.682 3.318 15 O -0.528 6.528 16 N -0.671 5.671 17 C 0.416 3.584 18 C -0.225 4.225 19 C 0.033 3.967 20 C -0.129 4.129 21 C -0.133 4.133 22 C 0.242 3.758 23 N -0.274 5.274 24 N -0.055 5.055 25 N -0.227 5.227 26 H 0.475 0.525 27 N -0.298 5.298 28 C 0.189 3.811 29 N -0.473 5.473 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.267 0.733 36 H 0.391 0.609 37 H 0.412 0.588 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.267 8.801 -12.973 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.156 3.844 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.365 5.365 14 C 0.381 3.619 15 O -0.399 6.399 16 N -0.318 5.318 17 C 0.182 3.818 18 C -0.250 4.250 19 C 0.023 3.977 20 C -0.186 4.186 21 C -0.141 4.141 22 C -0.038 4.038 23 N -0.147 5.147 24 N -0.050 5.050 25 N -0.073 5.073 26 H 0.329 0.671 27 N -0.150 5.150 28 C 0.026 3.974 29 N -0.187 5.187 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.248 0.752 38 H 0.160 0.840 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.874 8.543 -11.413 26.110 hybrid contribution -0.118 -0.244 -0.181 0.326 sum -21.993 8.299 -11.594 26.210 Atomic orbital electron populations 1.21849 0.96740 0.98852 1.02435 1.22312 0.94503 0.99988 1.01023 1.19068 0.95388 0.88189 0.81707 0.93140 1.21035 0.88554 1.39938 1.07760 0.90203 1.24815 0.94871 0.95107 0.97682 1.69862 1.08684 1.44487 1.29875 0.86908 0.81058 0.79953 0.80884 1.20241 1.22199 1.18280 1.45480 1.13522 1.58697 1.18813 1.16194 0.83820 0.79454 0.82424 1.91027 1.50885 1.61532 1.36444 1.43085 1.10603 1.59295 1.18827 1.18429 0.85366 0.88831 0.89145 1.21222 0.97461 1.08564 0.97704 1.19999 0.91374 0.91321 0.94995 1.21175 1.04340 1.01087 0.91957 1.18056 0.88361 1.10648 0.97077 1.23402 0.95658 0.98972 0.85728 1.76084 0.98981 1.15649 1.23950 1.78892 1.12572 1.15839 0.97672 1.47689 1.13180 1.38280 1.08180 0.67126 1.74976 0.94758 1.19159 1.26098 1.22815 0.90986 0.88401 0.95184 1.67933 1.02743 1.18915 1.29101 0.92755 0.92944 0.95203 0.92392 0.92771 0.92273 0.77613 0.75159 0.84002 0.90137 0.91123 0.88126 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.58 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.21 16 3 C 0.26 6.05 1.83 -69.08 -0.13 5.93 16 4 H 0.05 1.31 6.62 -51.93 -0.34 0.97 16 5 C -0.53 -14.17 9.31 -34.44 -0.32 -14.49 16 6 H 0.08 2.21 7.98 -52.48 -0.42 1.79 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 9 Si 0.88 21.65 24.42 -169.99 -4.15 17.50 16 10 H -0.28 -6.56 6.82 56.52 0.39 -6.17 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.71 -13.57 5.03 -59.82 -0.30 -13.87 16 14 C 0.68 12.67 7.09 -86.92 -0.62 12.06 16 15 O -0.53 -11.71 11.73 5.29 0.06 -11.65 16 16 N -0.67 -9.33 5.39 -15.80 -0.09 -9.41 16 17 C 0.42 5.84 7.42 -154.72 -1.15 4.69 16 18 C -0.23 -2.36 9.63 -39.29 -0.38 -2.74 16 19 C 0.03 0.34 5.94 -104.04 -0.62 -0.28 16 20 C -0.13 -1.05 9.28 36.01 0.33 -0.72 16 21 C -0.13 -1.57 5.89 -104.73 -0.62 -2.18 16 22 C 0.24 2.68 7.82 -156.30 -1.22 1.45 16 23 N -0.27 -2.91 9.23 32.15 0.30 -2.62 16 24 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 25 N -0.23 -1.55 7.90 60.35 0.48 -1.07 16 26 H 0.47 0.94 8.96 -340.37 -3.05 -2.11 16 27 N -0.30 -2.90 12.10 32.17 0.39 -2.51 16 28 C 0.19 2.53 10.86 -17.23 -0.19 2.34 16 29 N -0.47 -7.69 7.86 -12.11 -0.10 -7.79 16 30 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 31 H 0.05 1.07 5.65 -51.92 -0.29 0.78 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.26 3.23 -51.93 -0.17 1.09 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.39 6.37 8.56 -40.82 -0.35 6.02 16 37 H 0.41 4.02 8.71 -40.82 -0.36 3.67 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 41 H 0.10 0.92 5.31 -51.93 -0.28 0.64 16 42 H 0.17 1.98 7.88 -52.49 -0.41 1.57 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -35.09 345.32 -8.81 -43.89 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.37 Total: 5.05 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -4.82 Total: 2.36 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: 2.27 Total: -62.36 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.06 Total: -11.65 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.15 Total: 17.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.09 -8.81 -43.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.368 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds