Wall clock time and date at job start Tue Mar 31 2020 15:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47265 * 55.00364 * 3 2 1 5 5 C 1.50708 * 109.46831 * 174.99765 * 3 2 1 6 6 H 1.08005 * 119.99627 * 119.72768 * 5 3 2 7 7 C 1.37875 * 120.00165 * 300.00236 * 5 3 2 8 8 N 1.31510 * 119.99947 * 179.72121 * 7 5 3 9 9 Si 1.86800 * 119.99951 * 359.72673 * 7 5 3 10 10 H 1.48493 * 109.47591 * 89.99803 * 9 7 5 11 11 H 1.48497 * 109.46983 * 209.99986 * 9 7 5 12 12 H 1.48503 * 109.47095 * 329.99532 * 9 7 5 13 13 N 1.46494 * 109.47553 * 294.99876 * 3 2 1 14 14 C 1.34774 * 120.00042 * 85.00084 * 13 3 2 15 15 O 1.21585 * 119.99815 * 0.02562 * 14 13 3 16 16 N 1.34772 * 120.00374 * 180.02562 * 14 13 3 17 17 C 1.39315 * 120.00422 * 174.89843 * 16 14 13 18 18 C 1.39142 * 119.57207 * 185.11137 * 17 16 14 19 19 C 1.38118 * 119.21879 * 179.71082 * 18 17 16 20 20 C 1.50699 * 120.80148 * 180.28562 * 19 18 17 21 21 C 1.39906 * 118.39685 * 0.55505 * 19 18 17 22 22 C 1.48434 * 120.46069 * 179.71070 * 21 19 18 23 23 N 1.34051 * 126.67441 * 359.70364 * 22 21 19 24 24 N 1.28984 * 107.26606 * 179.83707 * 23 22 21 25 25 N 1.28724 * 108.94669 * 0.43534 * 24 23 22 26 26 H 0.97001 * 125.34058 * 179.76548 * 25 24 23 27 27 N 1.28873 * 109.32375 * 359.72185 * 25 24 23 28 28 C 1.39164 * 119.08046 * 359.72670 * 21 19 18 29 29 N 1.31791 * 120.68311 * 359.97438 * 28 21 19 30 30 H 1.09001 * 109.46940 * 300.00271 * 1 2 3 31 31 H 1.09007 * 109.46826 * 59.99542 * 1 2 3 32 32 H 1.08997 * 109.47106 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46642 * 240.00151 * 2 1 3 34 34 H 1.08997 * 109.46775 * 120.00487 * 2 1 3 35 35 H 0.97001 * 119.99988 * 180.02562 * 8 7 5 36 36 H 0.96999 * 120.00072 * 265.00476 * 13 3 2 37 37 H 0.97001 * 119.99969 * 354.90322 * 16 14 13 38 38 H 1.07997 * 120.38671 * 359.97438 * 18 17 16 39 39 H 1.09007 * 109.47110 * 270.27785 * 20 19 18 40 40 H 1.09005 * 109.47357 * 30.27066 * 20 19 18 41 41 H 1.08998 * 109.47305 * 150.27612 * 20 19 18 42 42 H 1.07994 * 119.65575 * 180.02562 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1475 1.8849 -0.6544 7 6 4.1433 0.8783 1.2280 8 7 5.4542 0.8749 1.3335 9 14 3.0961 0.1161 2.5740 10 1 2.8685 -1.3197 2.2711 11 1 3.7966 0.2420 3.8773 12 1 1.7904 0.8203 2.6439 13 7 1.6525 2.0975 -1.2517 14 6 0.4353 2.6645 -1.3669 15 8 -0.3411 2.6326 -0.4317 16 7 0.0785 3.2666 -2.5186 17 6 -1.2153 3.7588 -2.6758 18 6 -1.6064 4.2823 -3.9042 19 6 -2.8926 4.7627 -4.0536 20 6 -3.3559 5.3315 -5.3701 21 6 -3.7534 4.7139 -2.9518 22 6 -5.1433 5.2235 -3.0595 23 7 -5.7160 5.7641 -4.1442 24 7 -6.9268 6.0727 -3.8242 25 7 -7.1268 5.7575 -2.5923 26 1 -7.9562 5.8897 -2.1068 27 7 -6.0528 5.2378 -2.1053 28 6 -3.2882 4.1811 -1.7532 29 7 -2.0550 3.7271 -1.6527 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 5.8773 0.4764 2.1101 36 1 2.2720 2.1231 -1.9977 37 1 0.7226 3.3573 -3.2382 38 1 -0.9136 4.3087 -4.7323 39 1 -3.1484 6.4013 -5.3968 40 1 -2.8265 4.8383 -6.1854 41 1 -4.4276 5.1664 -5.4802 42 1 -3.9449 4.1384 -0.8969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:27 Heat of formation + Delta-G solvation = 128.706275 kcal Electronic energy + Delta-G solvation = -27595.174564 eV Core-core repulsion = 23613.510412 eV Total energy + Delta-G solvation = -3981.664152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.42602 -41.93435 -40.57357 -37.55833 -36.18773 -35.44555 -34.71267 -34.32052 -34.12919 -33.05936 -30.78594 -29.30867 -28.85598 -26.03323 -25.23693 -24.65696 -23.94774 -23.22224 -22.02609 -21.36209 -20.24135 -19.86973 -18.76218 -18.16542 -18.11742 -17.47081 -17.23189 -16.95425 -16.62513 -16.03292 -15.48513 -15.41673 -15.03586 -14.97173 -14.92608 -14.26627 -14.04648 -13.88057 -13.68230 -13.61703 -13.51195 -13.25027 -12.96430 -12.82516 -12.74713 -12.49395 -12.39342 -12.28672 -11.83404 -11.74682 -11.46967 -11.31808 -11.20911 -11.18406 -10.83339 -10.39858 -10.12650 -9.76920 -9.12758 -8.35854 -6.40608 -0.40462 0.17981 0.30371 1.26907 1.29222 1.37685 1.44985 1.47878 1.56639 2.25690 2.28457 2.67450 2.91518 3.00838 3.12742 3.18694 3.58585 3.74337 3.94339 4.19328 4.22747 4.27590 4.35574 4.44922 4.49158 4.59824 4.77908 4.81533 4.87617 4.94049 5.03249 5.04641 5.14489 5.25554 5.37012 5.43824 5.51351 5.54930 5.64545 5.68957 5.77346 5.89092 6.24965 6.61775 6.90268 7.15877 7.21812 7.34575 7.73582 8.79107 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.002456 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.475747 B =11395.607179 C =12056.387913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.137 4.137 3 C 0.270 3.730 4 H 0.022 0.978 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.933 3.067 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.261 1.261 13 N -0.711 5.711 14 C 0.685 3.315 15 O -0.567 6.567 16 N -0.656 5.656 17 C 0.388 3.612 18 C -0.201 4.201 19 C 0.030 3.970 20 C -0.124 4.124 21 C -0.126 4.126 22 C 0.227 3.773 23 N -0.282 5.282 24 N -0.057 5.057 25 N -0.201 5.201 26 H 0.493 0.507 27 N -0.304 5.304 28 C 0.173 3.827 29 N -0.518 5.518 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.270 0.730 36 H 0.405 0.595 37 H 0.432 0.568 38 H 0.181 0.819 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.129 9.033 -14.955 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.175 4.175 3 C 0.164 3.836 4 H 0.039 0.961 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.761 3.239 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.186 1.186 13 N -0.365 5.365 14 C 0.384 3.616 15 O -0.441 6.441 16 N -0.306 5.306 17 C 0.155 3.845 18 C -0.225 4.225 19 C 0.021 3.979 20 C -0.180 4.180 21 C -0.134 4.134 22 C -0.053 4.053 23 N -0.155 5.155 24 N -0.052 5.052 25 N -0.051 5.051 26 H 0.352 0.648 27 N -0.157 5.157 28 C 0.011 3.989 29 N -0.233 5.233 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.240 0.760 37 H 0.272 0.728 38 H 0.198 0.802 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -23.783 8.808 -13.465 28.714 hybrid contribution 0.301 -0.172 0.347 0.490 sum -23.482 8.636 -13.118 28.250 Atomic orbital electron populations 1.21696 0.95349 1.00073 1.01439 1.22222 0.95612 0.98666 1.01018 1.18641 0.93000 0.89209 0.82725 0.96065 1.21271 0.90205 1.38474 1.06837 0.92206 1.25489 0.95668 0.95915 0.99790 1.69964 1.10164 1.46210 1.30869 0.86085 0.79368 0.80001 0.78475 1.18558 1.22230 1.18571 1.45139 1.14405 1.58967 1.17967 1.16232 0.82960 0.79181 0.83184 1.91004 1.51844 1.62914 1.38314 1.42673 1.11363 1.58688 1.17879 1.18686 0.85027 0.90575 0.90191 1.21511 0.97884 1.05963 0.97106 1.20354 0.91130 0.90825 0.95630 1.21198 1.04038 1.01650 0.91120 1.18164 0.88980 1.09358 0.96870 1.23336 0.95710 0.99962 0.86268 1.76089 0.99424 1.15964 1.23992 1.78845 1.12130 1.15919 0.98284 1.47742 1.13298 1.36426 1.07655 0.64771 1.74947 0.95295 1.19222 1.26211 1.22786 0.90475 0.89484 0.96133 1.67744 1.04090 1.20298 1.31132 0.94645 0.93093 0.92723 0.91184 0.93851 0.92122 0.76010 0.72793 0.80175 0.89273 0.88726 0.88939 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.51 71.98 0.61 -4.50 16 2 C -0.14 -5.89 5.11 30.59 0.16 -5.73 16 3 C 0.27 12.59 1.83 44.25 0.08 12.67 16 4 H 0.02 1.14 6.62 -2.39 -0.02 1.12 16 5 C -0.53 -28.40 9.31 25.60 0.24 -28.16 16 6 H 0.06 3.38 7.98 -2.91 -0.02 3.35 16 7 C 0.03 1.75 5.45 84.65 0.46 2.21 16 8 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 9 Si 0.93 44.92 24.42 68.60 1.68 46.60 16 10 H -0.26 -11.77 6.82 99.48 0.68 -11.09 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.26 -12.60 6.53 99.48 0.65 -11.95 16 13 N -0.71 -26.85 5.03 -461.43 -2.32 -29.16 16 14 C 0.68 25.28 7.09 179.06 1.27 26.55 16 15 O -0.57 -25.51 11.73 -3.98 -0.05 -25.56 16 16 N -0.66 -17.43 5.39 -322.16 -1.74 -19.16 16 17 C 0.39 10.42 7.42 132.96 0.99 11.40 16 18 C -0.20 -3.66 9.63 22.46 0.22 -3.45 16 19 C 0.03 0.56 5.94 -19.49 -0.12 0.45 16 20 C -0.12 -1.62 9.28 71.24 0.66 -0.96 16 21 C -0.13 -2.82 5.89 -19.93 -0.12 -2.94 16 22 C 0.23 4.72 7.82 137.37 1.07 5.79 16 23 N -0.28 -5.50 9.23 -52.19 -0.48 -5.99 16 24 N -0.06 -0.92 13.47 37.02 0.50 -0.42 16 25 N -0.20 -2.35 7.90 37.02 0.29 -2.06 16 26 H 0.49 0.92 8.96 -347.54 -3.12 -2.20 16 27 N -0.30 -5.52 12.10 -52.14 -0.63 -6.15 16 28 C 0.17 4.65 10.86 84.92 0.92 5.57 16 29 N -0.52 -16.94 7.86 -192.24 -1.51 -18.45 16 30 H 0.03 1.52 7.84 -2.39 -0.02 1.50 16 31 H 0.05 2.04 5.65 -2.38 -0.01 2.02 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.82 8.14 -2.38 -0.02 2.81 16 34 H 0.04 1.96 3.23 -2.39 -0.01 1.96 16 35 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.40 12.87 8.56 -92.71 -0.79 12.08 16 37 H 0.43 7.49 8.71 -92.71 -0.81 6.69 16 38 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.09 0.81 8.10 -2.38 -0.02 0.79 16 41 H 0.09 1.45 5.31 -2.39 -0.01 1.43 16 42 H 0.16 4.12 7.88 -2.91 -0.02 4.10 16 Total: -1.00 -77.31 345.32 -1.18 -78.49 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -3.67 Total: 18.27 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 6.45 Total: 18.91 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -5.59 Total: -136.70 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.68 Total: 46.60 kcal Total: -77.31 -1.18 -78.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.200 kcal (2) G-P(sol) polarization free energy of solvation -77.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds