Wall clock time and date at job start Tue Mar 31 2020 15:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 N 1.46496 * 109.47297 * 179.97438 * 16 14 13 18 18 C 1.38908 * 120.00085 * 179.97438 * 17 16 14 19 19 C 1.39231 * 119.58173 * 0.02562 * 18 17 16 20 20 C 1.38068 * 119.22215 * 179.97438 * 19 18 17 21 21 C 1.39947 * 118.40063 * 359.97438 * 20 19 18 22 22 C 1.48426 * 120.44833 * 179.97438 * 21 20 19 23 23 N 1.34066 * 126.67390 * 359.67996 * 22 21 20 24 24 N 1.28991 * 107.26080 * 179.89547 * 23 22 21 25 25 N 1.28730 * 108.94703 * 0.38217 * 24 23 22 26 26 H 0.97004 * 125.33574 * 179.76340 * 25 24 23 27 27 N 1.28870 * 109.32503 * 359.75626 * 25 24 23 28 28 C 1.39124 * 119.09835 * 0.02562 * 21 20 19 29 29 N 1.31825 * 120.69216 * 359.74421 * 28 21 20 30 30 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 31 31 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 32 32 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 34 34 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 35 35 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 36 36 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 37 37 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 38 38 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 39 39 H 0.97001 * 119.99886 * 0.02562 * 17 16 14 40 40 H 1.08003 * 120.38807 * 359.97438 * 19 18 17 41 41 H 1.07998 * 120.79995 * 179.97438 * 20 19 18 42 42 H 1.07999 * 119.65374 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 7 -1.3223 3.8705 -2.5271 18 6 -1.9092 4.5396 -3.5936 19 6 -1.1982 4.6991 -4.7800 20 6 -1.7890 5.3648 -5.8355 21 6 -3.0889 5.8557 -5.6691 22 6 -3.7670 6.5788 -6.7738 23 7 -3.2609 6.8444 -7.9865 24 7 -4.1652 7.4847 -8.6468 25 7 -5.2019 7.6344 -7.8984 26 1 -6.0203 8.0862 -8.1574 27 7 -4.9820 7.0898 -6.7513 28 6 -3.7364 5.6577 -4.4538 29 7 -3.1401 5.0127 -3.4708 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0608 2.9500 36 1 2.2720 2.1231 -1.9978 37 1 0.7280 4.1540 -2.8668 38 1 0.0680 2.6143 -3.4687 39 1 -1.8120 3.7562 -1.6976 40 1 -0.1964 4.3066 -4.8735 41 1 -1.2606 5.5034 -6.7672 42 1 -4.7396 6.0332 -4.3154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590419680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:17 Heat of formation + Delta-G solvation = 125.558275 kcal Electronic energy + Delta-G solvation = -26545.415949 eV Core-core repulsion = 22563.615290 eV Total energy + Delta-G solvation = -3981.800659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.68106 -40.46089 -39.27421 -36.15525 -35.07668 -34.55994 -33.69004 -32.54152 -32.39517 -31.17128 -30.03259 -27.81595 -26.47827 -25.13873 -24.14181 -23.48236 -23.01231 -21.83759 -20.45465 -19.52350 -19.48512 -18.26407 -17.38218 -17.19179 -16.59794 -16.51463 -15.72378 -15.51586 -15.40588 -14.68591 -14.50575 -14.41141 -14.16881 -13.83481 -13.32672 -13.27557 -12.85344 -12.74331 -12.68893 -12.41021 -12.04564 -11.74654 -11.57137 -11.44755 -11.37948 -11.32540 -11.04264 -10.90867 -10.39809 -10.27964 -10.07120 -9.96483 -9.71802 -9.67944 -9.27481 -9.14141 -8.57810 -8.00541 -7.82146 -6.19389 -4.29439 0.54446 0.95268 1.14916 1.97907 2.18102 2.84408 3.12085 3.20358 3.27708 3.28864 3.48883 3.74714 3.93985 3.95423 4.30227 4.45624 4.70020 4.80771 5.04175 5.06375 5.12168 5.16531 5.25342 5.29433 5.32307 5.55454 5.81745 5.94125 6.11050 6.23940 6.31741 6.37016 6.56988 6.76606 6.94802 7.10220 7.23186 7.30189 7.47562 7.52132 7.62393 7.80022 7.89449 7.98128 8.09268 8.48066 8.66036 8.92446 9.37850 10.85850 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.031048 B = 0.001855 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.625717 B =15091.729375 C =15670.718248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.495 3.505 15 O -0.542 6.542 16 C 0.099 3.901 17 N -0.697 5.697 18 C 0.429 3.571 19 C -0.246 4.246 20 C 0.014 3.986 21 C -0.152 4.152 22 C 0.243 3.757 23 N -0.276 5.276 24 N -0.052 5.052 25 N -0.230 5.230 26 H 0.474 0.526 27 N -0.304 5.304 28 C 0.203 3.797 29 N -0.543 5.543 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.023 0.977 33 H 0.032 0.968 34 H 0.100 0.900 35 H 0.265 0.735 36 H 0.391 0.609 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.420 0.580 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.069 11.038 -18.554 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.279 3.721 15 O -0.421 6.421 16 C -0.029 4.029 17 N -0.329 5.329 18 C 0.191 3.809 19 C -0.271 4.271 20 C -0.013 4.013 21 C -0.162 4.162 22 C -0.037 4.037 23 N -0.149 5.149 24 N -0.047 5.047 25 N -0.076 5.076 26 H 0.328 0.672 27 N -0.156 5.156 28 C 0.040 3.960 29 N -0.260 5.260 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.224 0.776 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.260 0.740 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.811 10.907 -17.465 24.794 hybrid contribution 1.050 0.162 -0.503 1.176 sum -12.761 11.070 -17.968 24.662 Atomic orbital electron populations 1.21842 0.98310 0.98191 1.01128 1.21946 0.92603 0.99699 1.02454 1.18847 0.94379 0.89216 0.80635 0.93153 1.21203 0.90540 1.39329 1.06429 0.91980 1.24890 0.98698 0.94711 0.95364 1.69892 1.35215 1.37393 1.09302 0.86440 0.84699 0.77691 0.78229 1.20553 1.21055 1.19821 1.46447 1.14099 1.55375 1.18901 1.20107 0.83460 0.79931 0.88610 1.90697 1.51293 1.59930 1.40140 1.21301 0.83986 0.99374 0.98286 1.44372 1.15338 1.57871 1.15284 1.18503 0.88344 0.87220 0.86849 1.21384 1.02938 1.09259 0.93516 1.21284 0.91932 0.89840 0.98291 1.17860 0.96359 1.09360 0.92605 1.23444 0.87971 0.98752 0.93502 1.76079 1.21473 1.13553 1.03795 1.78887 0.92049 1.13567 1.20221 1.47688 1.16176 1.37305 1.06420 0.67177 1.74926 1.18877 1.15495 1.06263 1.22472 0.98360 0.89245 0.85933 1.67279 1.09752 1.16397 1.32590 0.93111 0.94422 0.95750 0.94918 0.88174 0.92476 0.77630 0.88876 0.88971 0.73984 0.84110 0.83794 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.35 2.24 -69.08 -0.15 6.19 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.39 8.73 -34.44 -0.30 -13.69 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.85 11.30 55.43 0.63 -23.22 16 9 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 N -0.70 -12.78 5.02 -54.93 -0.28 -13.05 16 14 C 0.50 8.45 6.47 -10.98 -0.07 8.38 16 15 O -0.54 -11.26 12.80 5.56 0.07 -11.19 16 16 C 0.10 1.18 5.36 -5.19 -0.03 1.15 16 17 N -0.70 -9.15 5.70 -61.59 -0.35 -9.50 16 18 C 0.43 5.31 7.64 -155.04 -1.19 4.12 16 19 C -0.25 -2.47 9.31 -39.27 -0.37 -2.84 16 20 C 0.01 0.13 9.83 -39.00 -0.38 -0.25 16 21 C -0.15 -1.59 5.89 -104.73 -0.62 -2.21 16 22 C 0.24 2.52 7.95 -156.29 -1.24 1.28 16 23 N -0.28 -2.99 12.30 32.15 0.40 -2.59 16 24 N -0.05 -0.47 13.47 60.35 0.81 0.35 16 25 N -0.23 -1.45 7.90 60.35 0.48 -0.97 16 26 H 0.47 0.66 8.96 -340.36 -3.05 -2.40 16 27 N -0.30 -2.66 12.10 32.17 0.39 -2.28 16 28 C 0.20 2.20 10.86 -17.23 -0.19 2.01 16 29 N -0.54 -7.01 10.38 -12.19 -0.13 -7.14 16 30 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 31 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.39 5.96 8.54 -40.82 -0.35 5.61 16 37 H 0.09 0.91 7.92 -51.93 -0.41 0.50 16 38 H 0.09 0.89 7.92 -51.93 -0.41 0.48 16 39 H 0.42 6.30 7.56 -40.82 -0.31 6.00 16 40 H 0.14 1.11 6.68 -52.48 -0.35 0.76 16 41 H 0.14 1.16 7.96 -52.49 -0.42 0.74 16 42 H 0.16 1.46 7.88 -52.49 -0.41 1.04 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -31.72 358.14 -9.57 -41.28 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.50 Total: 7.95 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -4.46 Total: 0.09 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 1.95 Total: -58.41 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.72 -9.57 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.840 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds