Wall clock time and date at job start Tue Mar 31 2020 15:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 N 1.46496 * 109.47297 * 179.97438 * 16 14 13 18 18 C 1.38908 * 120.00085 * 179.97438 * 17 16 14 19 19 C 1.39231 * 119.58173 * 0.02562 * 18 17 16 20 20 C 1.38068 * 119.22215 * 179.97438 * 19 18 17 21 21 C 1.39947 * 118.40063 * 359.97438 * 20 19 18 22 22 C 1.48426 * 120.44833 * 179.97438 * 21 20 19 23 23 N 1.34066 * 126.67390 * 359.67996 * 22 21 20 24 24 N 1.28991 * 107.26080 * 179.89547 * 23 22 21 25 25 N 1.28730 * 108.94703 * 0.38217 * 24 23 22 26 26 H 0.97004 * 125.33574 * 179.76340 * 25 24 23 27 27 N 1.28870 * 109.32503 * 359.75626 * 25 24 23 28 28 C 1.39124 * 119.09835 * 0.02562 * 21 20 19 29 29 N 1.31825 * 120.69216 * 359.74421 * 28 21 20 30 30 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 31 31 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 32 32 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 34 34 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 35 35 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 36 36 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 37 37 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 38 38 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 39 39 H 0.97001 * 119.99886 * 0.02562 * 17 16 14 40 40 H 1.08003 * 120.38807 * 359.97438 * 19 18 17 41 41 H 1.07998 * 120.79995 * 179.97438 * 20 19 18 42 42 H 1.07999 * 119.65374 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 7 -1.3223 3.8705 -2.5271 18 6 -1.9092 4.5396 -3.5936 19 6 -1.1982 4.6991 -4.7800 20 6 -1.7890 5.3648 -5.8355 21 6 -3.0889 5.8557 -5.6691 22 6 -3.7670 6.5788 -6.7738 23 7 -3.2609 6.8444 -7.9865 24 7 -4.1652 7.4847 -8.6468 25 7 -5.2019 7.6344 -7.8984 26 1 -6.0203 8.0862 -8.1574 27 7 -4.9820 7.0898 -6.7513 28 6 -3.7364 5.6577 -4.4538 29 7 -3.1401 5.0127 -3.4708 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0608 2.9500 36 1 2.2720 2.1231 -1.9978 37 1 0.7280 4.1540 -2.8668 38 1 0.0680 2.6143 -3.4687 39 1 -1.8120 3.7562 -1.6976 40 1 -0.1964 4.3066 -4.8735 41 1 -1.2606 5.5034 -6.7672 42 1 -4.7396 6.0332 -4.3154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:17 Heat of formation + Delta-G solvation = 101.757681 kcal Electronic energy + Delta-G solvation = -26546.448020 eV Core-core repulsion = 22563.615290 eV Total energy + Delta-G solvation = -3982.832731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.36354 -41.35825 -40.63524 -37.36682 -36.48261 -35.30967 -34.47808 -34.29910 -33.16798 -32.87043 -30.95882 -29.28742 -27.82971 -25.87617 -25.14603 -24.67531 -24.21824 -22.72585 -21.95348 -21.12049 -20.15246 -19.38707 -18.50272 -18.05601 -17.76350 -17.35337 -17.08100 -16.93452 -16.73403 -16.14441 -15.57019 -15.34805 -15.25255 -14.89646 -14.56996 -14.44582 -14.15294 -14.00435 -13.59450 -13.44564 -13.31780 -13.15171 -13.14573 -12.86154 -12.67989 -12.46525 -12.21580 -12.14860 -12.09459 -12.04021 -11.56265 -11.03663 -10.89629 -10.76234 -10.73410 -10.51163 -10.49437 -9.64383 -8.67983 -8.14169 -6.30922 -0.21003 0.24752 0.38213 1.40152 1.46872 1.47721 1.50813 1.57561 1.78371 1.87193 2.40609 2.69862 2.80189 2.93542 3.16082 3.23452 3.65918 3.84996 3.98326 4.06162 4.29764 4.34809 4.37733 4.42205 4.52095 4.55866 4.59396 4.78021 4.82671 5.05657 5.08529 5.20258 5.28305 5.44978 5.46169 5.57642 5.63151 5.68740 5.81436 5.88559 5.96227 6.19347 6.46602 6.77805 6.94789 7.12546 7.20551 7.35810 7.56085 8.90907 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.031048 B = 0.001855 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.625717 B =15091.729375 C =15670.718248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.258 1.258 13 N -0.697 5.697 14 C 0.492 3.508 15 O -0.584 6.584 16 C 0.114 3.886 17 N -0.710 5.710 18 C 0.412 3.588 19 C -0.238 4.238 20 C 0.015 3.985 21 C -0.151 4.151 22 C 0.230 3.770 23 N -0.297 5.297 24 N -0.058 5.058 25 N -0.202 5.202 26 H 0.493 0.507 27 N -0.304 5.304 28 C 0.195 3.805 29 N -0.571 5.571 30 H 0.024 0.976 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.263 0.737 36 H 0.409 0.591 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.407 0.593 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 11.812 -21.471 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.583 4.583 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.182 1.182 13 N -0.347 5.347 14 C 0.279 3.721 15 O -0.465 6.465 16 C -0.014 4.014 17 N -0.341 5.341 18 C 0.175 3.825 19 C -0.262 4.262 20 C -0.013 4.013 21 C -0.160 4.160 22 C -0.050 4.050 23 N -0.169 5.169 24 N -0.053 5.053 25 N -0.053 5.053 26 H 0.352 0.648 27 N -0.157 5.157 28 C 0.033 3.967 29 N -0.288 5.288 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.245 0.755 40 H 0.185 0.815 41 H 0.179 0.821 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.250 11.719 -20.471 27.055 hybrid contribution 0.715 0.023 0.344 0.794 sum -12.535 11.742 -20.126 26.459 Atomic orbital electron populations 1.21679 0.97020 0.99056 1.00293 1.21791 0.93649 0.99254 1.01387 1.18361 0.93596 0.89123 0.81407 0.98329 1.21598 0.91462 1.38660 1.06613 0.90624 1.25755 1.03071 0.94546 0.95208 1.70055 1.36972 1.38475 1.09872 0.85411 0.79464 0.77202 0.78644 1.20665 1.21357 1.18231 1.46127 1.15260 1.55522 1.17773 1.20958 0.82248 0.78955 0.89978 1.90689 1.52354 1.61161 1.42258 1.21311 0.84064 1.00558 0.95429 1.44404 1.15667 1.58916 1.15160 1.18687 0.88615 0.87852 0.87349 1.21616 1.03749 1.08520 0.92350 1.21520 0.91654 0.89218 0.98860 1.17976 0.96751 1.08869 0.92407 1.23464 0.88473 0.99458 0.93567 1.76054 1.22349 1.14428 1.04073 1.78833 0.92465 1.13719 1.20330 1.47754 1.16374 1.35810 1.05369 0.64788 1.74899 1.18409 1.15367 1.06995 1.22635 0.98879 0.89287 0.85892 1.67214 1.10613 1.17257 1.33727 0.95703 0.93438 0.93904 0.93762 0.91264 0.92741 0.75530 0.85916 0.85707 0.75504 0.81480 0.82058 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.51 71.98 0.61 -4.66 16 2 C -0.12 -5.68 5.45 30.60 0.17 -5.52 16 3 C 0.28 13.30 2.24 44.25 0.10 13.40 16 4 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 5 C -0.55 -27.14 8.73 25.60 0.22 -26.92 16 6 H 0.08 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.01 0.74 5.29 84.65 0.45 1.19 16 8 N -0.92 -51.02 11.30 21.45 0.24 -50.77 16 9 Si 0.97 40.67 29.54 68.60 2.03 42.69 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 13 N -0.70 -24.80 5.02 -446.09 -2.24 -27.04 16 14 C 0.49 16.40 6.47 87.66 0.57 16.96 16 15 O -0.58 -24.81 12.80 -3.02 -0.04 -24.85 16 16 C 0.11 2.42 5.36 85.63 0.46 2.87 16 17 N -0.71 -17.82 5.70 -348.77 -1.99 -19.80 16 18 C 0.41 9.58 7.64 133.11 1.02 10.60 16 19 C -0.24 -4.11 9.31 22.47 0.21 -3.90 16 20 C 0.01 0.25 9.83 22.64 0.22 0.47 16 21 C -0.15 -2.91 5.89 -19.94 -0.12 -3.03 16 22 C 0.23 4.40 7.95 137.36 1.09 5.49 16 23 N -0.30 -5.92 12.30 -52.19 -0.64 -6.56 16 24 N -0.06 -0.94 13.47 37.02 0.50 -0.44 16 25 N -0.20 -2.13 7.90 37.02 0.29 -1.83 16 26 H 0.49 0.22 8.96 -347.53 -3.12 -2.89 16 27 N -0.30 -4.79 12.10 -52.14 -0.63 -5.42 16 28 C 0.19 4.06 10.86 84.91 0.92 4.98 16 29 N -0.57 -14.42 10.38 -192.46 -2.00 -16.42 16 30 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 31 H 0.05 1.91 5.64 -2.39 -0.01 1.90 16 32 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 3.69 5.95 -2.39 -0.01 3.68 16 35 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.41 11.53 8.54 -92.71 -0.79 10.73 16 37 H 0.12 1.93 7.92 -2.39 -0.02 1.91 16 38 H 0.13 1.89 7.92 -2.39 -0.02 1.87 16 39 H 0.41 12.35 7.56 -92.71 -0.70 11.65 16 40 H 0.17 1.90 6.68 -2.91 -0.02 1.88 16 41 H 0.16 2.14 7.96 -2.91 -0.02 2.12 16 42 H 0.17 3.00 7.88 -2.91 -0.02 2.98 16 Total: -1.00 -71.30 358.14 -2.04 -73.34 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -3.49 Total: 25.16 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.92 Total: 11.94 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -6.46 Total: -128.29 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.04 Total: -24.85 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -71.30 -2.04 -73.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.097 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds