Wall clock time and date at job start Tue Mar 31 2020 15:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 H 1.09010 * 109.46928 * 305.69249 * 3 2 1 5 5 C 1.50704 * 109.47419 * 185.69616 * 3 2 1 6 6 H 1.08003 * 119.99305 * 275.00302 * 5 3 2 7 7 C 1.37874 * 120.00139 * 95.00289 * 5 3 2 8 8 N 1.31515 * 119.99846 * 184.83537 * 7 5 3 9 9 Si 1.86798 * 120.00098 * 4.82881 * 7 5 3 10 10 H 1.48501 * 109.47353 * 84.86472 * 9 7 5 11 11 H 1.48503 * 109.47211 * 204.86567 * 9 7 5 12 12 H 1.48503 * 109.47036 * 324.86284 * 9 7 5 13 13 N 1.46496 * 109.47344 * 65.68934 * 3 2 1 14 14 C 1.34774 * 120.00478 * 275.00467 * 13 3 2 15 15 O 1.21290 * 119.99700 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00437 * 179.97438 * 14 13 3 17 17 N 1.46499 * 109.47610 * 180.02562 * 16 14 13 18 18 C 1.38910 * 120.00284 * 180.02562 * 17 16 14 19 19 C 1.39234 * 119.57701 * 359.97438 * 18 17 16 20 20 C 1.38066 * 119.21680 * 179.97438 * 19 18 17 21 21 C 1.39953 * 118.40201 * 359.97438 * 20 19 18 22 22 C 1.48428 * 120.44571 * 179.97438 * 21 20 19 23 23 N 1.34058 * 126.68081 * 359.68840 * 22 21 20 24 24 N 1.28980 * 107.26731 * 179.89491 * 23 22 21 25 25 N 1.28733 * 108.95105 * 0.37265 * 24 23 22 26 26 H 0.96998 * 125.34147 * 179.76746 * 25 24 23 27 27 N 1.28870 * 109.31714 * 359.76025 * 25 24 23 28 28 C 1.39119 * 119.09906 * 0.02562 * 21 20 19 29 29 N 1.31820 * 120.69244 * 359.74467 * 28 21 20 30 30 H 1.09003 * 109.46911 * 299.99730 * 1 2 3 31 31 H 1.08996 * 109.47503 * 60.00067 * 1 2 3 32 32 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47374 * 240.00005 * 2 1 3 34 34 H 1.08996 * 109.47503 * 119.99933 * 2 1 3 35 35 H 0.96996 * 119.99702 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99519 * 94.99999 * 13 3 2 37 37 H 1.09008 * 109.47231 * 300.00125 * 16 14 13 38 38 H 1.09008 * 109.47195 * 59.99680 * 16 14 13 39 39 H 0.97008 * 119.99524 * 359.97438 * 17 16 14 40 40 H 1.07994 * 120.39513 * 0.02562 * 19 18 17 41 41 H 1.07996 * 120.80248 * 179.97438 * 20 19 18 42 42 H 1.08006 * 119.65266 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3334 0.7330 7 6 4.1157 1.5894 -1.3857 8 7 5.4204 1.4964 -1.5218 9 14 3.0418 1.9171 -2.8786 10 1 2.7753 3.3740 -2.9865 11 1 3.7401 1.4495 -4.1029 12 1 1.7562 1.1882 -2.7331 13 7 1.6667 2.0925 1.2587 14 6 0.4509 2.6589 1.3900 15 8 -0.3342 2.6308 0.4659 16 6 0.0667 3.3270 2.6850 17 7 -1.2936 3.8597 2.5750 18 6 -1.8686 4.5237 3.6511 19 6 -1.1444 4.6776 4.8303 20 6 -1.7230 5.3393 5.8950 21 6 -3.0239 5.8329 5.7445 22 6 -3.6897 6.5509 6.8601 23 7 -3.1753 6.7989 8.0729 24 7 -4.0684 7.4448 8.7428 25 7 -5.1122 7.6009 8.0056 26 1 -5.9273 8.0521 8.2755 27 7 -4.9041 7.0637 6.8529 28 6 -3.6849 5.6406 4.5356 29 7 -3.0966 5.0072 3.5404 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.8251 1.5984 -2.3974 36 1 2.2947 2.1151 1.9977 37 1 0.1070 2.5990 3.4954 38 1 0.7605 4.1415 2.8935 39 1 -1.7925 3.7493 1.7504 40 1 -0.1417 4.2847 4.9109 41 1 -1.1847 5.4728 6.8217 42 1 -4.6890 6.0182 4.4096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590419681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:21 Heat of formation + Delta-G solvation = 124.980045 kcal Electronic energy + Delta-G solvation = -26634.515607 eV Core-core repulsion = 22652.689874 eV Total energy + Delta-G solvation = -3981.825733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.69857 -40.49959 -39.41449 -36.24366 -35.18035 -34.58690 -33.71739 -32.50677 -32.41947 -31.70290 -30.10053 -28.09643 -26.78841 -25.16221 -24.16151 -23.49883 -22.85118 -21.88985 -20.58779 -19.72523 -19.52033 -18.34370 -17.39888 -17.26916 -16.84851 -16.54299 -15.88617 -15.75054 -15.53654 -14.70411 -14.55222 -14.38403 -14.19824 -13.90050 -13.44483 -13.34071 -13.01104 -12.80659 -12.71925 -12.43620 -12.27124 -12.00535 -11.91464 -11.73274 -11.50128 -11.39618 -11.02583 -10.79524 -10.75743 -10.14200 -10.07973 -9.98960 -9.91982 -9.71228 -9.42168 -9.29178 -8.78617 -8.19938 -7.86119 -6.31410 -4.36020 0.52079 0.93430 1.12263 1.96281 2.15938 2.78652 2.99255 3.21150 3.29259 3.35583 3.46673 3.71807 3.83849 3.93474 4.25330 4.42631 4.67489 4.77262 4.95139 5.02379 5.07202 5.13908 5.20929 5.24827 5.28251 5.52788 5.79347 5.91735 5.96191 6.00344 6.09340 6.14992 6.21054 6.53928 6.68888 6.73844 6.84869 6.89957 7.17412 7.23002 7.40286 7.45317 7.87623 7.92171 8.00969 8.40886 8.65992 8.75421 9.29863 10.79955 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.029921 B = 0.001950 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.558370 B =14355.326011 C =14601.749770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.080 0.920 7 C 0.082 3.918 8 N -0.885 5.885 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.695 5.695 14 C 0.495 3.505 15 O -0.547 6.547 16 C 0.099 3.901 17 N -0.698 5.698 18 C 0.428 3.572 19 C -0.245 4.245 20 C 0.014 3.986 21 C -0.151 4.151 22 C 0.243 3.757 23 N -0.275 5.275 24 N -0.051 5.051 25 N -0.230 5.230 26 H 0.474 0.526 27 N -0.304 5.304 28 C 0.202 3.798 29 N -0.543 5.543 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.269 0.731 36 H 0.396 0.604 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.420 0.580 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.584 9.131 17.583 26.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.098 0.902 7 C -0.123 4.123 8 N -0.521 5.521 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.343 5.343 14 C 0.279 3.721 15 O -0.426 6.426 16 C -0.029 4.029 17 N -0.330 5.330 18 C 0.190 3.810 19 C -0.270 4.270 20 C -0.013 4.013 21 C -0.161 4.161 22 C -0.037 4.037 23 N -0.149 5.149 24 N -0.047 5.047 25 N -0.076 5.076 26 H 0.328 0.672 27 N -0.156 5.156 28 C 0.040 3.960 29 N -0.260 5.260 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.230 0.770 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.260 0.740 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.175 9.116 16.560 26.223 hybrid contribution -0.312 0.406 -0.217 0.556 sum -18.487 9.522 16.343 26.449 Atomic orbital electron populations 1.21905 0.97394 0.98991 1.01937 1.22080 0.93641 0.99319 1.01413 1.19228 0.95669 0.89148 0.82473 0.92983 1.20983 0.88525 1.52073 0.95535 0.90232 1.24942 0.94890 0.93598 0.98838 1.69874 1.09761 1.47875 1.24617 0.86908 0.81246 0.79639 0.82254 1.19855 1.21144 1.18347 1.46585 1.13897 1.55264 1.18582 1.20236 0.83409 0.79752 0.88717 1.90687 1.50781 1.60108 1.41036 1.21302 0.84056 0.99527 0.98038 1.44359 1.15210 1.58259 1.15185 1.18497 0.88428 0.87239 0.86788 1.21390 1.02848 1.09252 0.93523 1.21294 0.92029 0.89779 0.98239 1.17865 0.96368 1.09313 0.92528 1.23439 0.87941 0.98805 0.93516 1.76075 1.21844 1.13523 1.03426 1.78888 0.92064 1.13271 1.20455 1.47689 1.15995 1.37428 1.06468 0.67169 1.74925 1.19041 1.15756 1.05852 1.22468 0.98363 0.89378 0.85839 1.67271 1.10191 1.16411 1.32166 0.93297 0.93066 0.94998 0.91954 0.92897 0.92133 0.77044 0.88816 0.88658 0.74039 0.84055 0.83745 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.53 37.16 0.32 -2.39 16 2 C -0.13 -2.54 5.59 -26.73 -0.15 -2.69 16 3 C 0.24 5.17 1.89 -69.08 -0.13 5.04 16 4 H 0.05 1.26 4.73 -51.92 -0.25 1.02 16 5 C -0.53 -13.48 9.05 -34.44 -0.31 -13.79 16 6 H 0.08 2.12 8.06 -52.48 -0.42 1.69 16 7 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 8 N -0.89 -25.18 13.96 55.43 0.77 -24.41 16 9 Si 0.87 20.80 26.99 -169.99 -4.59 16.21 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.26 -6.06 6.82 56.52 0.39 -5.68 16 13 N -0.69 -12.12 5.03 -54.93 -0.28 -12.40 16 14 C 0.49 8.02 6.50 -10.99 -0.07 7.95 16 15 O -0.55 -10.73 12.81 5.55 0.07 -10.66 16 16 C 0.10 1.13 5.36 -5.20 -0.03 1.10 16 17 N -0.70 -8.82 5.70 -61.59 -0.35 -9.17 16 18 C 0.43 5.15 7.64 -155.04 -1.19 3.97 16 19 C -0.24 -2.40 9.31 -39.27 -0.37 -2.77 16 20 C 0.01 0.13 9.83 -39.00 -0.38 -0.25 16 21 C -0.15 -1.55 5.89 -104.73 -0.62 -2.17 16 22 C 0.24 2.48 7.95 -156.29 -1.24 1.24 16 23 N -0.28 -2.96 12.30 32.15 0.40 -2.56 16 24 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 25 N -0.23 -1.42 7.90 60.35 0.48 -0.95 16 26 H 0.47 0.62 8.96 -340.37 -3.05 -2.44 16 27 N -0.30 -2.63 12.10 32.17 0.39 -2.24 16 28 C 0.20 2.15 10.86 -17.23 -0.19 1.96 16 29 N -0.54 -6.85 10.38 -12.18 -0.13 -6.97 16 30 H 0.05 0.89 5.63 -51.93 -0.29 0.60 16 31 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.40 5.87 8.59 -40.82 -0.35 5.52 16 37 H 0.09 0.84 7.92 -51.92 -0.41 0.43 16 38 H 0.10 0.91 7.92 -51.92 -0.41 0.50 16 39 H 0.42 6.03 7.56 -40.82 -0.31 5.72 16 40 H 0.14 1.08 6.68 -52.49 -0.35 0.73 16 41 H 0.14 1.15 7.96 -52.49 -0.42 0.73 16 42 H 0.16 1.42 7.88 -52.48 -0.41 1.01 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -32.66 358.05 -8.98 -41.64 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.50 Total: 6.44 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -4.45 Total: -0.69 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 2.09 Total: -58.34 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.59 Total: 16.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.66 -8.98 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.621 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds