Wall clock time and date at job start Tue Mar 31 2020 15:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 H 1.09010 * 109.46928 * 305.69249 * 3 2 1 5 5 C 1.50704 * 109.47419 * 185.69616 * 3 2 1 6 6 H 1.08003 * 119.99305 * 275.00302 * 5 3 2 7 7 C 1.37874 * 120.00139 * 95.00289 * 5 3 2 8 8 N 1.31515 * 119.99846 * 184.83537 * 7 5 3 9 9 Si 1.86798 * 120.00098 * 4.82881 * 7 5 3 10 10 H 1.48501 * 109.47353 * 84.86472 * 9 7 5 11 11 H 1.48503 * 109.47211 * 204.86567 * 9 7 5 12 12 H 1.48503 * 109.47036 * 324.86284 * 9 7 5 13 13 N 1.46496 * 109.47344 * 65.68934 * 3 2 1 14 14 C 1.34774 * 120.00478 * 275.00467 * 13 3 2 15 15 O 1.21290 * 119.99700 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00437 * 179.97438 * 14 13 3 17 17 N 1.46499 * 109.47610 * 180.02562 * 16 14 13 18 18 C 1.38910 * 120.00284 * 180.02562 * 17 16 14 19 19 C 1.39234 * 119.57701 * 359.97438 * 18 17 16 20 20 C 1.38066 * 119.21680 * 179.97438 * 19 18 17 21 21 C 1.39953 * 118.40201 * 359.97438 * 20 19 18 22 22 C 1.48428 * 120.44571 * 179.97438 * 21 20 19 23 23 N 1.34058 * 126.68081 * 359.68840 * 22 21 20 24 24 N 1.28980 * 107.26731 * 179.89491 * 23 22 21 25 25 N 1.28733 * 108.95105 * 0.37265 * 24 23 22 26 26 H 0.96998 * 125.34147 * 179.76746 * 25 24 23 27 27 N 1.28870 * 109.31714 * 359.76025 * 25 24 23 28 28 C 1.39119 * 119.09906 * 0.02562 * 21 20 19 29 29 N 1.31820 * 120.69244 * 359.74467 * 28 21 20 30 30 H 1.09003 * 109.46911 * 299.99730 * 1 2 3 31 31 H 1.08996 * 109.47503 * 60.00067 * 1 2 3 32 32 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47374 * 240.00005 * 2 1 3 34 34 H 1.08996 * 109.47503 * 119.99933 * 2 1 3 35 35 H 0.96996 * 119.99702 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99519 * 94.99999 * 13 3 2 37 37 H 1.09008 * 109.47231 * 300.00125 * 16 14 13 38 38 H 1.09008 * 109.47195 * 59.99680 * 16 14 13 39 39 H 0.97008 * 119.99524 * 359.97438 * 17 16 14 40 40 H 1.07994 * 120.39513 * 0.02562 * 19 18 17 41 41 H 1.07996 * 120.80248 * 179.97438 * 20 19 18 42 42 H 1.08006 * 119.65266 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3334 0.7330 7 6 4.1157 1.5894 -1.3857 8 7 5.4204 1.4964 -1.5218 9 14 3.0418 1.9171 -2.8786 10 1 2.7753 3.3740 -2.9865 11 1 3.7401 1.4495 -4.1029 12 1 1.7562 1.1882 -2.7331 13 7 1.6667 2.0925 1.2587 14 6 0.4509 2.6589 1.3900 15 8 -0.3342 2.6308 0.4659 16 6 0.0667 3.3270 2.6850 17 7 -1.2936 3.8597 2.5750 18 6 -1.8686 4.5237 3.6511 19 6 -1.1444 4.6776 4.8303 20 6 -1.7230 5.3393 5.8950 21 6 -3.0239 5.8329 5.7445 22 6 -3.6897 6.5509 6.8601 23 7 -3.1753 6.7989 8.0729 24 7 -4.0684 7.4448 8.7428 25 7 -5.1122 7.6009 8.0056 26 1 -5.9273 8.0521 8.2755 27 7 -4.9041 7.0637 6.8529 28 6 -3.6849 5.6406 4.5356 29 7 -3.0966 5.0072 3.5404 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.8251 1.5984 -2.3974 36 1 2.2947 2.1151 1.9977 37 1 0.1070 2.5990 3.4954 38 1 0.7605 4.1415 2.8935 39 1 -1.7925 3.7493 1.7504 40 1 -0.1417 4.2847 4.9109 41 1 -1.1847 5.4728 6.8217 42 1 -4.6890 6.0182 4.4096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:20 Heat of formation + Delta-G solvation = 99.858706 kcal Electronic energy + Delta-G solvation = -26635.604950 eV Core-core repulsion = 22652.689874 eV Total energy + Delta-G solvation = -3982.915076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.37037 -41.37712 -40.69660 -37.41614 -36.48852 -35.31750 -34.48304 -34.39034 -33.22684 -33.16414 -30.97853 -29.62932 -27.97055 -25.87961 -25.03729 -24.54830 -24.22291 -22.75036 -21.94322 -21.25347 -20.16084 -19.53196 -18.71067 -18.06246 -17.95263 -17.36452 -17.21409 -17.02366 -16.72834 -16.07470 -15.60485 -15.36407 -15.31954 -14.90560 -14.76793 -14.54176 -14.17412 -14.02453 -13.77277 -13.66625 -13.50670 -13.44371 -13.15104 -12.93156 -12.56632 -12.47088 -12.34100 -12.21898 -12.10038 -11.87480 -11.67923 -11.19353 -10.90232 -10.84601 -10.77119 -10.73889 -10.51405 -9.72398 -8.68551 -8.37731 -6.42919 -0.21646 0.24145 0.37492 1.29222 1.35101 1.39566 1.44343 1.50212 1.72653 1.84350 2.27402 2.58611 2.78365 2.92953 3.04318 3.22893 3.65399 3.81667 3.97190 4.04675 4.29351 4.33583 4.35229 4.36947 4.41182 4.44520 4.54877 4.57626 4.81819 4.84759 5.05342 5.13502 5.19975 5.25816 5.28543 5.42898 5.45701 5.57953 5.68157 5.77134 5.89095 6.14294 6.46584 6.63693 6.88247 7.11453 7.19990 7.22807 7.44535 8.76941 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.029921 B = 0.001950 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.558370 B =14355.326011 C =14601.749770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.242 3.758 4 H 0.030 0.970 5 C -0.523 4.523 6 H 0.061 0.939 7 C 0.034 3.966 8 N -0.929 5.929 9 Si 0.923 3.077 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.255 1.255 13 N -0.695 5.695 14 C 0.495 3.505 15 O -0.581 6.581 16 C 0.112 3.888 17 N -0.709 5.709 18 C 0.412 3.588 19 C -0.238 4.238 20 C 0.014 3.986 21 C -0.151 4.151 22 C 0.231 3.769 23 N -0.297 5.297 24 N -0.058 5.058 25 N -0.202 5.202 26 H 0.493 0.507 27 N -0.304 5.304 28 C 0.195 3.805 29 N -0.569 5.569 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.269 0.731 36 H 0.410 0.590 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.408 0.592 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.022 9.599 19.514 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C 0.138 3.862 4 H 0.048 0.952 5 C -0.562 4.562 6 H 0.079 0.921 7 C -0.167 4.167 8 N -0.567 5.567 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.179 1.179 13 N -0.345 5.345 14 C 0.281 3.719 15 O -0.462 6.462 16 C -0.016 4.016 17 N -0.341 5.341 18 C 0.175 3.825 19 C -0.262 4.262 20 C -0.013 4.013 21 C -0.160 4.160 22 C -0.050 4.050 23 N -0.170 5.170 24 N -0.054 5.054 25 N -0.053 5.053 26 H 0.352 0.648 27 N -0.157 5.157 28 C 0.033 3.967 29 N -0.287 5.287 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.246 0.754 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.246 0.754 40 H 0.185 0.815 41 H 0.178 0.822 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.638 9.610 18.559 28.678 hybrid contribution 0.009 0.334 -0.671 0.750 sum -19.629 9.944 17.888 28.358 Atomic orbital electron populations 1.21772 0.95860 1.00237 1.01211 1.21991 0.94901 0.98024 1.01343 1.18903 0.93195 0.90262 0.83850 0.95226 1.21220 0.90325 1.50078 0.94545 0.92130 1.25572 0.95642 0.94161 1.01328 1.69973 1.11187 1.50404 1.25178 0.86116 0.80014 0.79155 0.79901 1.20181 1.20761 1.17939 1.46223 1.15111 1.55623 1.17543 1.20943 0.82147 0.78755 0.90030 1.90681 1.51633 1.61100 1.42836 1.21322 0.84071 1.00664 0.95521 1.44378 1.15490 1.59178 1.15053 1.18675 0.88684 0.87826 0.87277 1.21618 1.03625 1.08552 0.92453 1.21521 0.91794 0.89224 0.98789 1.17981 0.96752 1.08901 0.92370 1.23470 0.88435 0.99486 0.93566 1.76050 1.22736 1.14429 1.03746 1.78834 0.92506 1.13441 1.20570 1.47755 1.16174 1.35933 1.05442 0.64788 1.74897 1.18567 1.15634 1.06573 1.22633 0.98885 0.89399 0.85757 1.67214 1.11018 1.17246 1.33223 0.92828 0.94964 0.92710 0.93408 0.91621 0.92151 0.75380 0.85533 0.86133 0.75376 0.81538 0.82158 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 8.53 71.98 0.61 -4.16 16 2 C -0.12 -4.87 5.59 30.59 0.17 -4.70 16 3 C 0.24 10.41 1.89 44.25 0.08 10.50 16 4 H 0.03 1.43 4.73 -2.38 -0.01 1.42 16 5 C -0.52 -26.55 9.05 25.60 0.23 -26.32 16 6 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 7 C 0.03 1.82 5.47 84.65 0.46 2.28 16 8 N -0.93 -53.78 13.96 21.45 0.30 -53.48 16 9 Si 0.92 43.40 26.99 68.60 1.85 45.26 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.72 6.82 99.48 0.68 -11.04 16 13 N -0.70 -23.15 5.03 -446.09 -2.24 -25.40 16 14 C 0.49 15.14 6.50 87.66 0.57 15.71 16 15 O -0.58 -22.33 12.81 -3.06 -0.04 -22.37 16 16 C 0.11 2.21 5.36 85.63 0.46 2.67 16 17 N -0.71 -16.67 5.70 -348.76 -1.99 -18.66 16 18 C 0.41 9.18 7.64 133.11 1.02 10.20 16 19 C -0.24 -3.99 9.31 22.47 0.21 -3.78 16 20 C 0.01 0.23 9.83 22.64 0.22 0.45 16 21 C -0.15 -2.86 5.89 -19.93 -0.12 -2.97 16 22 C 0.23 4.34 7.95 137.36 1.09 5.43 16 23 N -0.30 -5.90 12.30 -52.19 -0.64 -6.54 16 24 N -0.06 -0.94 13.47 37.02 0.50 -0.44 16 25 N -0.20 -2.09 7.90 37.02 0.29 -1.80 16 26 H 0.49 0.14 8.96 -347.54 -3.12 -2.98 16 27 N -0.30 -4.71 12.10 -52.14 -0.63 -5.34 16 28 C 0.19 3.93 10.86 84.91 0.92 4.86 16 29 N -0.57 -13.83 10.38 -192.46 -2.00 -15.82 16 30 H 0.05 1.85 5.63 -2.39 -0.01 1.84 16 31 H 0.03 1.26 7.89 -2.39 -0.02 1.24 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.41 11.32 8.59 -92.70 -0.80 10.52 16 37 H 0.13 1.73 7.92 -2.38 -0.02 1.71 16 38 H 0.12 1.84 7.92 -2.38 -0.02 1.82 16 39 H 0.41 11.48 7.56 -92.70 -0.70 10.78 16 40 H 0.17 1.85 6.68 -2.91 -0.02 1.83 16 41 H 0.16 2.12 7.96 -2.91 -0.02 2.10 16 42 H 0.17 2.89 7.88 -2.91 -0.02 2.86 16 Total: -1.00 -71.46 358.05 -2.18 -73.64 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -3.52 Total: 20.78 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 5.94 Total: 10.16 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -6.41 Total: -127.47 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.04 Total: -22.37 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.85 Total: 45.26 kcal Total: -71.46 -2.18 -73.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.494 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds