Wall clock time and date at job start Tue Mar 31 2020 17:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21685 * 120.00172 * 359.97438 * 6 5 4 8 8 C 1.46729 * 119.99915 * 179.97438 * 6 5 4 9 9 C 1.36669 * 126.02297 * 180.02562 * 8 6 5 10 10 C 1.40810 * 107.05450 * 179.97438 * 9 8 6 11 11 C 1.48503 * 126.28122 * 179.97438 * 10 9 8 12 12 N 1.34033 * 126.67508 * 0.02997 * 11 10 9 13 13 N 1.28991 * 107.26732 * 179.97438 * 12 11 10 14 14 N 1.28726 * 108.93902 * 359.97438 * 13 12 11 15 15 H 0.97009 * 125.33845 * 180.02562 * 14 13 12 16 16 N 1.28869 * 109.31821 * 359.72726 * 14 13 12 17 17 C 1.36556 * 107.42933 * 359.97438 * 10 9 8 18 18 N 1.34844 * 108.61808 * 359.75327 * 17 10 9 19 19 H 0.96998 * 125.53285 * 180.26989 * 18 17 10 20 20 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 21 21 C 1.54327 * 107.26790 * 358.93814 * 20 5 4 22 22 H 1.08997 * 110.87056 * 96.24201 * 21 20 5 23 23 N 1.46497 * 110.71583 * 219.44194 * 21 20 5 24 24 C 1.36936 * 120.00157 * 268.52321 * 23 21 20 25 25 H 1.07999 * 120.00237 * 0.02562 * 24 23 21 26 26 C 1.38814 * 120.00050 * 180.02562 * 24 23 21 27 27 N 1.31620 * 120.00390 * 179.97438 * 26 24 23 28 28 Si 1.86802 * 119.99949 * 0.02562 * 26 24 23 29 29 H 1.48502 * 109.47341 * 89.99541 * 28 26 24 30 30 H 1.48494 * 109.47272 * 209.99531 * 28 26 24 31 31 H 1.48499 * 109.47291 * 329.99824 * 28 26 24 32 32 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 33 33 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 34 34 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 35 35 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 36 36 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 37 37 H 1.08005 * 126.47341 * 359.97438 * 9 8 6 38 38 H 1.08007 * 125.69003 * 179.97438 * 17 10 9 39 39 H 1.08993 * 109.88066 * 239.51797 * 20 5 4 40 40 H 1.08996 * 110.00664 * 118.42784 * 20 5 4 41 41 H 0.96996 * 119.99952 * 88.52453 * 23 21 20 42 42 H 0.96993 * 120.00324 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3027 -1.4967 -2.7992 8 6 5.7383 -1.9788 -1.0312 9 6 6.8512 -2.3256 -1.7446 10 6 7.8526 -2.6576 -0.8121 11 6 9.2359 -3.0965 -1.1269 12 7 9.7685 -3.2514 -2.3472 13 7 10.9869 -3.6430 -2.1863 14 7 11.2326 -3.7370 -0.9262 15 1 12.0783 -4.0118 -0.5384 16 7 10.1809 -3.4027 -0.2607 17 6 7.3182 -2.5019 0.4349 18 7 6.0419 -2.0860 0.3074 19 1 5.4352 -1.8957 1.0399 20 6 3.4678 -1.2731 0.6969 21 6 2.0861 -0.8075 1.2025 22 1 1.4454 -1.6612 1.4231 23 7 2.2278 0.0502 2.3817 24 6 2.1990 -0.4994 3.6356 25 1 2.0722 -1.5653 3.7552 26 6 2.3328 0.3133 4.7529 27 7 2.3046 -0.2148 5.9582 28 14 2.5514 2.1569 4.5461 29 1 1.2203 2.8151 4.5341 30 1 3.3568 2.6896 5.6742 31 1 3.2509 2.4319 3.2653 32 1 -0.3633 0.5029 0.8962 33 1 -0.3633 0.5248 -0.8836 34 1 -0.3633 -1.0275 -0.0125 35 1 1.4531 -1.6706 -1.4022 36 1 2.1567 -0.1721 -2.0834 37 1 6.9449 -2.3419 -2.8204 38 1 7.8332 -2.6787 1.3677 39 1 4.2425 -0.5984 1.0609 40 1 3.6669 -2.2872 1.0433 41 1 2.3421 1.0074 2.2743 42 1 2.3977 0.3531 6.7389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591740178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:27 Heat of formation + Delta-G solvation = 161.219693 kcal Electronic energy + Delta-G solvation = -27590.555398 eV Core-core repulsion = 23610.301133 eV Total energy + Delta-G solvation = -3980.254264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.49325 -41.64649 -39.59130 -37.68216 -34.54908 -34.35918 -33.69595 -32.72510 -31.29161 -30.90784 -29.57909 -28.18092 -26.52035 -24.83389 -24.15030 -24.09418 -22.44660 -21.00923 -20.53855 -20.30915 -20.16445 -19.05759 -17.73218 -17.62135 -17.19918 -16.28417 -16.22230 -15.36021 -15.04987 -14.67164 -14.39212 -14.11675 -13.97549 -13.58903 -13.55635 -13.44328 -13.20515 -12.76376 -12.69578 -12.55690 -12.37834 -12.20616 -11.84596 -11.61113 -11.50019 -11.29156 -11.20526 -11.17455 -10.95671 -10.79333 -10.51369 -10.20905 -10.07025 -9.79759 -9.19861 -9.02455 -8.65312 -8.32117 -7.58126 -5.99802 -3.39351 0.92905 1.39465 1.56305 2.14359 2.84620 2.95272 3.04459 3.21325 3.24872 3.31864 3.40296 3.78440 4.13607 4.38242 4.44727 4.79743 4.83810 4.88794 4.94913 5.20370 5.24411 5.28451 5.36008 5.40736 5.42686 5.53202 5.59859 5.69384 5.78892 5.87162 5.91830 5.94163 6.08126 6.16654 6.24718 6.26281 6.36430 6.44722 6.56009 6.67013 7.15868 7.50836 7.72924 8.09926 8.14567 8.18435 8.94186 9.66539 9.83942 11.17267 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.003068 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.191883 B = 9124.343453 C =10905.123737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.615 5.615 6 C 0.602 3.398 7 O -0.535 6.535 8 C -0.044 4.044 9 C -0.065 4.065 10 C -0.127 4.127 11 C 0.267 3.733 12 N -0.271 5.271 13 N -0.055 5.055 14 N -0.233 5.233 15 H 0.473 0.527 16 N -0.307 5.307 17 C 0.083 3.917 18 N -0.528 5.528 19 H 0.431 0.569 20 C 0.058 3.942 21 C 0.185 3.815 22 H 0.082 0.918 23 N -0.734 5.734 24 C -0.260 4.260 25 H 0.093 0.907 26 C 0.014 3.986 27 N -0.925 5.925 28 Si 0.882 3.118 29 H -0.282 1.282 30 H -0.289 1.289 31 H -0.277 1.277 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.158 0.842 38 H 0.183 0.817 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.365 0.635 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.169 -4.865 -11.704 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 H 0.101 0.899 4 C -0.006 4.006 5 N -0.348 5.348 6 C 0.392 3.608 7 O -0.412 6.412 8 C -0.156 4.156 9 C -0.092 4.092 10 C -0.137 4.137 11 C -0.013 4.013 12 N -0.144 5.144 13 N -0.051 5.051 14 N -0.079 5.079 15 H 0.327 0.673 16 N -0.159 5.159 17 C -0.061 4.061 18 N -0.128 5.128 19 H 0.277 0.723 20 C -0.069 4.069 21 C 0.073 3.927 22 H 0.100 0.900 23 N -0.375 5.375 24 C -0.390 4.390 25 H 0.111 0.889 26 C -0.183 4.183 27 N -0.571 5.571 28 Si 0.712 3.288 29 H -0.208 1.208 30 H -0.216 1.216 31 H -0.203 1.203 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.176 0.824 38 H 0.201 0.799 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.199 0.801 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.428 -5.087 -12.449 17.017 hybrid contribution 0.376 1.303 1.138 1.770 sum 10.804 -3.784 -11.311 16.093 Atomic orbital electron populations 1.21615 0.93388 1.02157 1.02056 1.22710 0.96785 0.99685 0.94648 0.89945 1.22287 0.82152 0.98407 0.97803 1.48392 1.12423 1.66524 1.07452 1.16661 0.81344 0.77295 0.85532 1.90831 1.82359 1.54641 1.13390 1.20042 0.96724 1.15888 0.82920 1.20945 0.89359 0.99136 0.99744 1.16325 0.88594 1.15449 0.93325 1.22804 0.94491 0.99036 0.84952 1.76110 0.99477 1.16483 1.22371 1.78895 1.11302 1.14432 1.00448 1.47663 1.13471 1.43235 1.03497 0.67327 1.74933 0.95178 1.20774 1.25026 1.21978 0.84840 1.00179 0.99084 1.42755 1.12109 1.49817 1.08143 0.72337 1.23470 1.03969 1.00952 0.78498 1.21194 0.91171 0.94126 0.86199 0.89988 1.42739 1.87846 1.05129 1.01827 1.19052 1.44067 0.94686 0.81179 0.88912 1.24685 1.01107 0.97482 0.95056 1.69688 1.55651 1.34712 0.97058 0.86608 0.78114 0.86961 0.77118 1.20798 1.21563 1.20291 0.91398 0.92890 0.92394 0.91073 0.90422 0.82392 0.79946 0.90964 0.91674 0.80134 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.29 37.16 0.35 -1.25 16 2 C -0.12 -1.57 3.27 -88.47 -0.29 -1.86 16 3 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 4 C 0.12 1.51 6.38 -2.53 -0.02 1.49 16 5 N -0.61 -8.77 3.33 -172.04 -0.57 -9.35 16 6 C 0.60 9.41 7.82 -12.83 -0.10 9.31 16 7 O -0.53 -9.73 17.12 5.20 0.09 -9.64 16 8 C -0.04 -0.61 6.84 -82.38 -0.56 -1.17 16 9 C -0.06 -0.88 10.56 -39.18 -0.41 -1.30 16 10 C -0.13 -1.59 6.10 -105.30 -0.64 -2.23 16 11 C 0.27 3.36 8.18 -156.31 -1.28 2.08 16 12 N -0.27 -3.61 12.54 32.16 0.40 -3.21 16 13 N -0.06 -0.61 13.47 60.35 0.81 0.21 16 14 N -0.23 -1.88 7.90 60.35 0.48 -1.41 16 15 H 0.47 1.45 8.96 -340.36 -3.05 -1.60 16 16 N -0.31 -3.26 12.39 32.18 0.40 -2.86 16 17 C 0.08 0.91 11.84 -16.84 -0.20 0.71 16 18 N -0.53 -6.28 5.57 -9.54 -0.05 -6.33 16 19 H 0.43 4.91 4.87 -40.82 -0.20 4.71 16 20 C 0.06 0.82 4.86 -3.06 -0.01 0.80 16 21 C 0.19 2.92 3.09 -66.10 -0.20 2.72 16 22 H 0.08 1.33 7.99 -51.93 -0.41 0.91 16 23 N -0.73 -14.64 4.95 -51.65 -0.26 -14.90 16 24 C -0.26 -6.39 10.44 -15.06 -0.16 -6.55 16 25 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 26 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 27 N -0.93 -26.69 13.97 55.49 0.78 -25.91 16 28 Si 0.88 20.14 27.74 -169.99 -4.71 15.42 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 31 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.07 0.86 8.03 -51.93 -0.42 0.44 16 36 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 37 H 0.16 2.15 8.06 -52.48 -0.42 1.73 16 38 H 0.18 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.07 1.07 6.94 -51.93 -0.36 0.71 16 40 H 0.07 0.87 7.24 -51.93 -0.38 0.49 16 41 H 0.37 7.33 5.62 -40.82 -0.23 7.10 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -32.47 356.45 -8.48 -40.95 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.59 Total: 8.62 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -3.63 Total: 3.03 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: 1.99 Total: -63.76 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.71 Total: 15.42 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.47 -8.48 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591740178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.169 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds