Wall clock time and date at job start Tue Mar 31 2020 17:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21685 * 120.00172 * 359.97438 * 6 5 4 8 8 C 1.46729 * 119.99915 * 179.97438 * 6 5 4 9 9 C 1.36669 * 126.02297 * 180.02562 * 8 6 5 10 10 C 1.40810 * 107.05450 * 179.97438 * 9 8 6 11 11 C 1.48503 * 126.28122 * 179.97438 * 10 9 8 12 12 N 1.34033 * 126.67508 * 0.02997 * 11 10 9 13 13 N 1.28991 * 107.26732 * 179.97438 * 12 11 10 14 14 N 1.28726 * 108.93902 * 359.97438 * 13 12 11 15 15 H 0.97009 * 125.33845 * 180.02562 * 14 13 12 16 16 N 1.28869 * 109.31821 * 359.72726 * 14 13 12 17 17 C 1.36556 * 107.42933 * 359.97438 * 10 9 8 18 18 N 1.34844 * 108.61808 * 359.75327 * 17 10 9 19 19 H 0.96998 * 125.53285 * 180.26989 * 18 17 10 20 20 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 21 21 C 1.54327 * 107.26790 * 358.93814 * 20 5 4 22 22 H 1.08997 * 110.87056 * 96.24201 * 21 20 5 23 23 N 1.46497 * 110.71583 * 219.44194 * 21 20 5 24 24 C 1.36936 * 120.00157 * 268.52321 * 23 21 20 25 25 H 1.07999 * 120.00237 * 0.02562 * 24 23 21 26 26 C 1.38814 * 120.00050 * 180.02562 * 24 23 21 27 27 N 1.31620 * 120.00390 * 179.97438 * 26 24 23 28 28 Si 1.86802 * 119.99949 * 0.02562 * 26 24 23 29 29 H 1.48502 * 109.47341 * 89.99541 * 28 26 24 30 30 H 1.48494 * 109.47272 * 209.99531 * 28 26 24 31 31 H 1.48499 * 109.47291 * 329.99824 * 28 26 24 32 32 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 33 33 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 34 34 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 35 35 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 36 36 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 37 37 H 1.08005 * 126.47341 * 359.97438 * 9 8 6 38 38 H 1.08007 * 125.69003 * 179.97438 * 17 10 9 39 39 H 1.08993 * 109.88066 * 239.51797 * 20 5 4 40 40 H 1.08996 * 110.00664 * 118.42784 * 20 5 4 41 41 H 0.96996 * 119.99952 * 88.52453 * 23 21 20 42 42 H 0.96993 * 120.00324 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3027 -1.4967 -2.7992 8 6 5.7383 -1.9788 -1.0312 9 6 6.8512 -2.3256 -1.7446 10 6 7.8526 -2.6576 -0.8121 11 6 9.2359 -3.0965 -1.1269 12 7 9.7685 -3.2514 -2.3472 13 7 10.9869 -3.6430 -2.1863 14 7 11.2326 -3.7370 -0.9262 15 1 12.0783 -4.0118 -0.5384 16 7 10.1809 -3.4027 -0.2607 17 6 7.3182 -2.5019 0.4349 18 7 6.0419 -2.0860 0.3074 19 1 5.4352 -1.8957 1.0399 20 6 3.4678 -1.2731 0.6969 21 6 2.0861 -0.8075 1.2025 22 1 1.4454 -1.6612 1.4231 23 7 2.2278 0.0502 2.3817 24 6 2.1990 -0.4994 3.6356 25 1 2.0722 -1.5653 3.7552 26 6 2.3328 0.3133 4.7529 27 7 2.3046 -0.2148 5.9582 28 14 2.5514 2.1569 4.5461 29 1 1.2203 2.8151 4.5341 30 1 3.3568 2.6896 5.6742 31 1 3.2509 2.4319 3.2653 32 1 -0.3633 0.5029 0.8962 33 1 -0.3633 0.5248 -0.8836 34 1 -0.3633 -1.0275 -0.0125 35 1 1.4531 -1.6706 -1.4022 36 1 2.1567 -0.1721 -2.0834 37 1 6.9449 -2.3419 -2.8204 38 1 7.8332 -2.6787 1.3677 39 1 4.2425 -0.5984 1.0609 40 1 3.6669 -2.2872 1.0433 41 1 2.3421 1.0074 2.2743 42 1 2.3977 0.3531 6.7389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591740178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:26 Heat of formation + Delta-G solvation = 137.640075 kcal Electronic energy + Delta-G solvation = -27591.577887 eV Core-core repulsion = 23610.301133 eV Total energy + Delta-G solvation = -3981.276753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.33655 -42.66169 -40.75507 -38.95688 -36.01841 -35.36230 -34.62894 -33.98512 -32.94349 -31.91481 -30.58262 -29.57887 -27.54487 -25.87174 -25.55214 -25.00989 -23.73807 -22.23287 -21.67276 -21.32429 -21.22708 -19.91555 -19.52247 -18.68820 -18.03474 -17.47801 -17.42125 -16.51012 -16.41895 -15.99256 -15.64467 -15.21920 -14.95296 -14.91270 -14.77613 -14.64303 -14.46796 -14.22175 -13.76735 -13.63363 -13.55107 -13.18045 -13.06279 -12.96981 -12.95643 -12.36406 -12.29020 -12.14444 -12.07290 -12.05575 -11.93290 -11.80521 -11.49269 -11.30483 -10.98815 -10.06084 -9.77763 -9.38774 -9.29608 -8.00837 -5.36388 0.10563 0.36162 0.60027 1.41451 1.43229 1.50064 1.51891 1.75151 1.96025 2.05038 2.29535 2.49364 2.87021 3.22291 3.27134 3.32501 3.58257 3.71112 3.74010 4.10884 4.12659 4.20273 4.24590 4.29149 4.36390 4.46767 4.53666 4.66529 4.77131 4.82248 4.84598 4.93346 5.01079 5.09793 5.15795 5.29254 5.42784 5.48187 5.66211 5.71239 5.79356 6.21725 6.22696 6.33738 6.95550 7.07366 7.24171 7.81029 7.99102 9.19476 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.003068 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.191883 B = 9124.343453 C =10905.123737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.612 5.612 6 C 0.601 3.399 7 O -0.567 6.567 8 C -0.061 4.061 9 C -0.069 4.069 10 C -0.138 4.138 11 C 0.254 3.746 12 N -0.303 5.303 13 N -0.061 5.061 14 N -0.203 5.203 15 H 0.493 0.507 16 N -0.302 5.302 17 C 0.103 3.897 18 N -0.523 5.523 19 H 0.434 0.566 20 C 0.067 3.933 21 C 0.178 3.822 22 H 0.079 0.921 23 N -0.735 5.735 24 C -0.229 4.229 25 H 0.068 0.932 26 C -0.053 4.053 27 N -0.978 5.978 28 Si 0.943 3.057 29 H -0.283 1.283 30 H -0.302 1.302 31 H -0.251 1.251 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.214 0.786 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.367 0.633 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.000 -4.551 -12.412 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 H 0.100 0.900 4 C -0.006 4.006 5 N -0.344 5.344 6 C 0.392 3.608 7 O -0.447 6.447 8 C -0.173 4.173 9 C -0.097 4.097 10 C -0.148 4.148 11 C -0.026 4.026 12 N -0.176 5.176 13 N -0.056 5.056 14 N -0.054 5.054 15 H 0.352 0.648 16 N -0.155 5.155 17 C -0.041 4.041 18 N -0.123 5.123 19 H 0.280 0.720 20 C -0.059 4.059 21 C 0.068 3.932 22 H 0.097 0.903 23 N -0.377 5.377 24 C -0.360 4.360 25 H 0.086 0.914 26 C -0.245 4.245 27 N -0.628 5.628 28 Si 0.772 3.228 29 H -0.209 1.209 30 H -0.229 1.229 31 H -0.176 1.176 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.168 0.832 38 H 0.231 0.769 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.201 0.799 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.266 -4.781 -13.223 18.018 hybrid contribution 0.196 1.069 1.315 1.706 sum 11.462 -3.712 -11.908 16.940 Atomic orbital electron populations 1.21601 0.92115 1.02828 1.02361 1.22629 0.97752 0.99159 0.93120 0.90003 1.22385 0.81645 0.98940 0.97631 1.48383 1.12732 1.66070 1.07240 1.16840 0.81903 0.76893 0.85198 1.90807 1.82982 1.56264 1.14647 1.19819 0.96224 1.17419 0.83848 1.20980 0.89891 0.99079 0.99740 1.16404 0.88718 1.16032 0.93649 1.22831 0.94846 0.99855 0.85098 1.76095 1.00407 1.17827 1.23250 1.78836 1.10693 1.14702 1.01352 1.47733 1.13786 1.41079 1.02765 0.64802 1.74888 0.95300 1.20511 1.24761 1.22442 0.84100 0.97847 0.99687 1.42690 1.12528 1.49740 1.07383 0.72011 1.23227 1.02649 1.01514 0.78514 1.21369 0.92113 0.94008 0.85756 0.90286 1.42668 1.87982 1.05639 1.01428 1.19012 1.40563 0.93555 0.82846 0.91369 1.25361 1.02589 1.01722 0.94824 1.69850 1.58857 1.36125 0.97936 0.85597 0.77853 0.81819 0.77551 1.20903 1.22947 1.17586 0.92878 0.90722 0.91668 0.89775 0.90116 0.83188 0.76903 0.91046 0.90628 0.79874 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.29 71.98 0.67 -2.13 16 2 C -0.11 -2.59 3.27 -9.40 -0.03 -2.62 16 3 H 0.08 2.04 8.01 -2.39 -0.02 2.03 16 4 C 0.12 2.77 6.38 86.86 0.55 3.32 16 5 N -0.61 -16.50 3.33 -816.45 -2.72 -19.22 16 6 C 0.60 18.31 7.82 86.46 0.68 18.98 16 7 O -0.57 -20.50 17.12 -4.30 -0.07 -20.57 16 8 C -0.06 -1.66 6.84 40.08 0.27 -1.39 16 9 C -0.07 -1.87 10.56 22.53 0.24 -1.63 16 10 C -0.14 -3.30 6.10 -20.30 -0.12 -3.43 16 11 C 0.25 6.05 8.18 137.40 1.12 7.18 16 12 N -0.30 -7.86 12.54 -52.16 -0.65 -8.52 16 13 N -0.06 -1.25 13.47 37.02 0.50 -0.75 16 14 N -0.20 -2.84 7.90 37.02 0.29 -2.55 16 15 H 0.49 1.74 8.96 -347.53 -3.12 -1.38 16 16 N -0.30 -5.74 12.39 -52.11 -0.65 -6.39 16 17 C 0.10 2.03 11.84 83.84 0.99 3.02 16 18 N -0.52 -11.53 5.57 -184.11 -1.03 -12.56 16 19 H 0.43 9.03 4.87 -92.71 -0.45 8.58 16 20 C 0.07 1.79 4.86 86.73 0.42 2.21 16 21 C 0.18 5.30 3.09 46.18 0.14 5.44 16 22 H 0.08 2.44 7.99 -2.39 -0.02 2.42 16 23 N -0.74 -28.13 4.95 -317.34 -1.57 -29.70 16 24 C -0.23 -11.13 10.44 84.03 0.88 -10.26 16 25 H 0.07 3.62 8.06 -2.91 -0.02 3.60 16 26 C -0.05 -2.78 5.50 84.86 0.47 -2.31 16 27 N -0.98 -57.53 13.97 21.65 0.30 -57.22 16 28 Si 0.94 41.21 27.74 68.60 1.90 43.11 16 29 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 30 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 31 H -0.25 -9.76 6.52 99.48 0.65 -9.11 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 35 H 0.08 1.82 8.03 -2.39 -0.02 1.80 16 36 H 0.08 1.93 8.04 -2.39 -0.02 1.91 16 37 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 38 H 0.21 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.07 1.96 6.94 -2.39 -0.02 1.94 16 40 H 0.08 1.88 7.24 -2.39 -0.02 1.86 16 41 H 0.37 13.87 5.62 -92.71 -0.52 13.35 16 42 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -70.58 356.45 -0.44 -71.03 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -3.04 Total: 26.96 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.28 Total: 16.39 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -5.52 Total: -136.92 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.07 Total: -20.57 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.90 Total: 43.11 kcal Total: -70.58 -0.44 -71.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591740178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.666 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds