Wall clock time and date at job start Tue Mar 31 2020 17:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.91782 * 2 1 4 4 C 1.54912 * 110.99964 * 236.09241 * 2 1 3 5 5 N 1.47428 * 104.83095 * 204.91758 * 4 2 1 6 6 C 1.36931 * 125.65100 * 204.09420 * 5 4 2 7 7 H 1.08002 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47339 * 180.02562 * 10 8 6 12 12 H 1.48493 * 109.47239 * 300.00542 * 10 8 6 13 13 H 1.48504 * 109.46636 * 60.00101 * 10 8 6 14 14 C 1.47032 * 108.70123 * 24.35753 * 5 4 2 15 15 C 1.54327 * 107.26586 * 358.58848 * 14 5 4 16 16 H 1.09000 * 110.51881 * 96.45074 * 15 14 5 17 17 N 1.46500 * 110.84789 * 219.67541 * 15 14 5 18 18 C 1.34778 * 119.99572 * 268.69019 * 17 15 14 19 19 O 1.21693 * 120.00379 * 359.97438 * 18 17 15 20 20 C 1.46722 * 120.00053 * 180.02562 * 18 17 15 21 21 C 1.36676 * 126.02423 * 179.71622 * 20 18 17 22 22 C 1.40807 * 107.05306 * 179.84693 * 21 20 18 23 23 C 1.48499 * 126.28714 * 180.11996 * 22 21 20 24 24 N 1.34043 * 126.66905 * 0.02562 * 23 22 21 25 25 N 1.28988 * 107.27089 * 179.83639 * 24 23 22 26 26 N 1.28732 * 108.93687 * 0.42912 * 25 24 23 27 27 H 0.97002 * 125.34426 * 179.72549 * 26 25 24 28 28 N 1.28872 * 109.31483 * 359.72641 * 26 25 24 29 29 C 1.36563 * 107.43148 * 0.41110 * 22 21 20 30 30 N 1.34848 * 108.61571 * 359.74963 * 29 22 21 31 31 H 0.96998 * 125.52531 * 179.97438 * 30 29 22 32 32 H 1.09001 * 109.47544 * 182.45090 * 1 2 3 33 33 H 1.09005 * 109.46735 * 302.45232 * 1 2 3 34 34 H 1.09002 * 109.47189 * 62.44977 * 1 2 3 35 35 H 1.08997 * 110.36341 * 86.08302 * 4 2 1 36 36 H 1.08991 * 110.46576 * 323.80381 * 4 2 1 37 37 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 38 38 H 1.09006 * 109.87698 * 118.13072 * 14 5 4 39 39 H 1.08994 * 109.88039 * 239.29140 * 14 5 4 40 40 H 0.96997 * 120.00874 * 88.69392 * 17 15 14 41 41 H 1.07991 * 126.47514 * 359.97438 * 21 20 18 42 42 H 1.08008 * 125.69449 * 179.75991 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7733 6 6 4.4639 -1.5670 -1.6071 7 1 4.3332 -1.5121 -2.6778 8 6 5.6833 -1.9647 -1.0763 9 7 5.8427 -2.0311 0.2286 10 14 7.0975 -2.4070 -2.2137 11 1 8.2801 -2.7966 -1.4047 12 1 6.6971 -3.5425 -3.0829 13 1 7.4391 -1.2340 -3.0578 14 6 3.4656 -1.2795 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4467 -1.6632 1.4211 17 7 2.2287 0.0496 2.3814 18 6 2.2004 -0.4914 3.6155 19 8 2.0561 -1.6922 3.7504 20 6 2.3426 0.3674 4.7966 21 6 2.3265 -0.0473 6.0988 22 6 2.4981 1.0983 6.8992 23 6 2.5481 1.1344 8.3829 24 7 2.4397 0.0876 9.2132 25 7 2.5382 0.5415 10.4165 26 7 2.6931 1.8186 10.3699 27 1 2.7880 2.4008 11.1400 28 7 2.7022 2.2023 9.1397 29 6 2.6034 2.1711 6.0608 30 7 2.5099 1.7340 4.7886 31 1 2.5532 2.2919 3.9963 32 1 -0.3634 -1.0267 0.0439 33 1 -0.3633 0.5515 0.8672 34 1 -0.3634 0.4753 -0.9111 35 1 2.1559 -0.1722 -2.0836 36 1 1.4524 -1.6705 -1.4042 37 1 6.6947 -2.3094 0.5996 38 1 3.6600 -2.2965 1.0368 39 1 4.2423 -0.6086 1.0631 40 1 2.3433 1.0068 2.2741 41 1 2.2071 -1.0623 6.4478 42 1 2.7391 3.1983 6.3658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591742616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:34 Heat of formation + Delta-G solvation = 162.464103 kcal Electronic energy + Delta-G solvation = -27333.124443 eV Core-core repulsion = 23352.924141 eV Total energy + Delta-G solvation = -3980.200303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.52191 -41.57187 -39.20973 -37.41547 -34.54514 -34.04007 -33.64421 -32.67001 -31.00921 -30.39550 -29.70636 -27.66740 -25.66533 -24.83991 -24.39059 -23.76403 -22.43913 -20.51534 -20.41340 -20.14659 -19.85396 -19.15074 -18.33307 -17.22811 -16.90689 -16.01431 -15.69014 -15.16111 -14.95581 -14.85293 -14.07036 -13.94553 -13.82332 -13.62605 -13.44651 -13.15461 -12.81816 -12.77412 -12.64145 -12.24182 -11.97444 -11.73255 -11.52884 -11.37950 -11.24123 -11.20438 -11.03387 -10.77605 -10.68788 -10.45265 -10.03417 -9.97535 -9.80818 -9.68167 -9.02890 -8.67792 -8.58710 -8.33848 -6.84840 -5.69601 -3.05185 0.89013 1.36450 1.60447 2.10819 2.79839 2.94992 3.30175 3.40979 3.45384 3.47245 3.57420 3.78137 4.10726 4.49932 4.80315 4.86394 5.04080 5.17785 5.24941 5.27874 5.37922 5.39619 5.53699 5.71278 5.73965 5.93040 5.94462 5.97366 6.10906 6.15997 6.22958 6.30521 6.39981 6.44613 6.56911 6.60534 6.68451 6.88965 7.05994 7.53294 7.56202 7.78951 7.84553 8.07283 8.24777 8.44235 9.20965 9.81648 10.46187 11.40911 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.002518 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.502697 B =11117.231342 C =12196.369337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.290 1.290 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.093 0.907 17 N -0.711 5.711 18 C 0.586 3.414 19 O -0.520 6.520 20 C -0.037 4.037 21 C -0.066 4.066 22 C -0.122 4.122 23 C 0.266 3.734 24 N -0.268 5.268 25 N -0.053 5.053 26 N -0.234 5.234 27 H 0.473 0.527 28 N -0.310 5.310 29 C 0.077 3.923 30 N -0.529 5.529 31 H 0.424 0.576 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.023 0.977 37 H 0.253 0.747 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.389 0.611 41 H 0.160 0.840 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.843 14.515 14.955 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.743 3.257 11 H -0.216 1.216 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.111 0.889 17 N -0.360 5.360 18 C 0.372 3.628 19 O -0.395 6.395 20 C -0.149 4.149 21 C -0.093 4.093 22 C -0.133 4.133 23 C -0.013 4.013 24 N -0.142 5.142 25 N -0.049 5.049 26 N -0.079 5.079 27 H 0.326 0.674 28 N -0.162 5.162 29 C -0.065 4.065 30 N -0.124 5.124 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.222 0.778 41 H 0.178 0.822 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.733 13.287 15.475 22.600 hybrid contribution 1.104 1.178 -0.793 1.798 sum -8.629 14.465 14.682 22.344 Atomic orbital electron populations 1.21700 0.94973 1.01892 1.00945 1.22615 0.94859 0.99394 0.96466 0.90609 1.21581 0.87663 0.95092 0.94258 1.44401 1.07860 1.79249 1.01756 1.18990 0.89265 1.38894 0.88887 0.90381 1.24834 0.97894 1.01638 0.96020 1.69957 1.24333 1.53077 1.09184 0.86198 0.81845 0.78260 0.79425 1.21603 1.21118 1.21228 1.21491 0.89948 1.00484 0.83398 1.22563 1.00575 0.92760 0.82512 0.88936 1.45791 1.73984 1.10514 1.05733 1.16940 0.77199 0.87080 0.81605 1.90878 1.49332 1.13694 1.85601 1.20314 1.16439 0.82369 0.95794 1.21017 0.99841 0.99019 0.89376 1.16330 1.17570 0.94444 0.84933 1.22809 0.99296 0.84166 0.95074 1.76145 1.18169 1.25614 0.94243 1.78923 1.14372 0.93644 1.17949 1.47659 1.46193 1.06751 1.07325 0.67360 1.74884 1.23894 1.26726 0.90704 1.21814 1.02976 0.99243 0.82468 1.41845 1.54977 1.07428 1.08162 0.73809 0.92481 0.93213 0.92725 0.93974 0.95959 0.93621 0.93296 0.93128 0.77823 0.82247 0.80109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.30 37.16 0.35 -1.39 16 2 C -0.11 -1.79 3.27 -88.47 -0.29 -2.08 16 3 H 0.08 1.12 8.01 -51.93 -0.42 0.70 16 4 C 0.14 2.77 6.70 -2.53 -0.02 2.76 16 5 N -0.61 -15.25 3.39 -170.06 -0.58 -15.82 16 6 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.33 10.31 55.49 0.57 -26.76 16 10 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 C 0.17 4.19 5.13 -3.06 -0.02 4.17 16 15 C 0.12 2.21 2.78 -66.09 -0.18 2.03 16 16 H 0.09 1.82 7.42 -51.93 -0.39 1.44 16 17 N -0.71 -10.69 5.10 -53.31 -0.27 -10.96 16 18 C 0.59 9.68 7.79 -12.83 -0.10 9.58 16 19 O -0.52 -10.83 16.51 5.19 0.09 -10.75 16 20 C -0.04 -0.49 7.00 -82.38 -0.58 -1.07 16 21 C -0.07 -0.89 10.56 -39.18 -0.41 -1.31 16 22 C -0.12 -1.42 6.10 -105.30 -0.64 -2.06 16 23 C 0.27 3.19 8.18 -156.31 -1.28 1.91 16 24 N -0.27 -3.55 12.54 32.16 0.40 -3.14 16 25 N -0.05 -0.57 13.47 60.35 0.81 0.24 16 26 N -0.23 -1.75 7.90 60.35 0.48 -1.27 16 27 H 0.47 1.12 8.96 -340.37 -3.05 -1.93 16 28 N -0.31 -3.00 12.39 32.18 0.40 -2.60 16 29 C 0.08 0.66 11.84 -16.83 -0.20 0.46 16 30 N -0.53 -4.67 5.95 -9.54 -0.06 -4.73 16 31 H 0.42 2.41 8.16 -40.82 -0.33 2.08 16 32 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.02 0.44 8.04 -51.93 -0.42 0.03 16 37 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.05 1.40 7.52 -51.93 -0.39 1.01 16 39 H 0.05 1.35 7.25 -51.93 -0.38 0.97 16 40 H 0.39 4.46 7.66 -40.82 -0.31 4.15 16 41 H 0.16 2.29 8.06 -52.49 -0.42 1.86 16 42 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -36.93 360.66 -9.13 -46.06 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.76 Total: 1.01 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -3.62 Total: 6.12 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: 1.76 Total: -65.04 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.93 -9.13 -46.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591742616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.521 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds