Wall clock time and date at job start Tue Mar 31 2020 17:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.91782 * 2 1 4 4 C 1.54912 * 110.99964 * 236.09241 * 2 1 3 5 5 N 1.47428 * 104.83095 * 204.91758 * 4 2 1 6 6 C 1.36931 * 125.65100 * 204.09420 * 5 4 2 7 7 H 1.08002 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47339 * 180.02562 * 10 8 6 12 12 H 1.48493 * 109.47239 * 300.00542 * 10 8 6 13 13 H 1.48504 * 109.46636 * 60.00101 * 10 8 6 14 14 C 1.47032 * 108.70123 * 24.35753 * 5 4 2 15 15 C 1.54327 * 107.26586 * 358.58848 * 14 5 4 16 16 H 1.09000 * 110.51881 * 96.45074 * 15 14 5 17 17 N 1.46500 * 110.84789 * 219.67541 * 15 14 5 18 18 C 1.34778 * 119.99572 * 268.69019 * 17 15 14 19 19 O 1.21693 * 120.00379 * 359.97438 * 18 17 15 20 20 C 1.46722 * 120.00053 * 180.02562 * 18 17 15 21 21 C 1.36676 * 126.02423 * 179.71622 * 20 18 17 22 22 C 1.40807 * 107.05306 * 179.84693 * 21 20 18 23 23 C 1.48499 * 126.28714 * 180.11996 * 22 21 20 24 24 N 1.34043 * 126.66905 * 0.02562 * 23 22 21 25 25 N 1.28988 * 107.27089 * 179.83639 * 24 23 22 26 26 N 1.28732 * 108.93687 * 0.42912 * 25 24 23 27 27 H 0.97002 * 125.34426 * 179.72549 * 26 25 24 28 28 N 1.28872 * 109.31483 * 359.72641 * 26 25 24 29 29 C 1.36563 * 107.43148 * 0.41110 * 22 21 20 30 30 N 1.34848 * 108.61571 * 359.74963 * 29 22 21 31 31 H 0.96998 * 125.52531 * 179.97438 * 30 29 22 32 32 H 1.09001 * 109.47544 * 182.45090 * 1 2 3 33 33 H 1.09005 * 109.46735 * 302.45232 * 1 2 3 34 34 H 1.09002 * 109.47189 * 62.44977 * 1 2 3 35 35 H 1.08997 * 110.36341 * 86.08302 * 4 2 1 36 36 H 1.08991 * 110.46576 * 323.80381 * 4 2 1 37 37 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 38 38 H 1.09006 * 109.87698 * 118.13072 * 14 5 4 39 39 H 1.08994 * 109.88039 * 239.29140 * 14 5 4 40 40 H 0.96997 * 120.00874 * 88.69392 * 17 15 14 41 41 H 1.07991 * 126.47514 * 359.97438 * 21 20 18 42 42 H 1.08008 * 125.69449 * 179.75991 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7733 6 6 4.4639 -1.5670 -1.6071 7 1 4.3332 -1.5121 -2.6778 8 6 5.6833 -1.9647 -1.0763 9 7 5.8427 -2.0311 0.2286 10 14 7.0975 -2.4070 -2.2137 11 1 8.2801 -2.7966 -1.4047 12 1 6.6971 -3.5425 -3.0829 13 1 7.4391 -1.2340 -3.0578 14 6 3.4656 -1.2795 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4467 -1.6632 1.4211 17 7 2.2287 0.0496 2.3814 18 6 2.2004 -0.4914 3.6155 19 8 2.0561 -1.6922 3.7504 20 6 2.3426 0.3674 4.7966 21 6 2.3265 -0.0473 6.0988 22 6 2.4981 1.0983 6.8992 23 6 2.5481 1.1344 8.3829 24 7 2.4397 0.0876 9.2132 25 7 2.5382 0.5415 10.4165 26 7 2.6931 1.8186 10.3699 27 1 2.7880 2.4008 11.1400 28 7 2.7022 2.2023 9.1397 29 6 2.6034 2.1711 6.0608 30 7 2.5099 1.7340 4.7886 31 1 2.5532 2.2919 3.9963 32 1 -0.3634 -1.0267 0.0439 33 1 -0.3633 0.5515 0.8672 34 1 -0.3634 0.4753 -0.9111 35 1 2.1559 -0.1722 -2.0836 36 1 1.4524 -1.6705 -1.4042 37 1 6.6947 -2.3094 0.5996 38 1 3.6600 -2.2965 1.0368 39 1 4.2423 -0.6086 1.0631 40 1 2.3433 1.0068 2.2741 41 1 2.2071 -1.0623 6.4478 42 1 2.7391 3.1983 6.3658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591742616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:33 Heat of formation + Delta-G solvation = 132.938286 kcal Electronic energy + Delta-G solvation = -27334.404779 eV Core-core repulsion = 23352.924141 eV Total energy + Delta-G solvation = -3981.480638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.31174 -42.50728 -40.61181 -38.98442 -35.71336 -35.31803 -34.59381 -34.21478 -32.17342 -31.89364 -30.80664 -29.24345 -27.36455 -25.71877 -25.59524 -24.92180 -23.74935 -21.94794 -21.65922 -21.27988 -21.01865 -20.11436 -19.33242 -18.87681 -18.01083 -17.43227 -16.96751 -16.74902 -16.19997 -15.88159 -15.63231 -15.26845 -14.90146 -14.85329 -14.69625 -14.51566 -14.27168 -14.05109 -13.68573 -13.56032 -13.32805 -13.05670 -13.03249 -12.84594 -12.57014 -12.34620 -12.25583 -12.08313 -12.03988 -12.02862 -11.85135 -11.67234 -11.46502 -11.21200 -10.73568 -10.13620 -9.91078 -9.26083 -8.92186 -7.84224 -5.22047 0.12731 0.42350 0.63835 1.44605 1.48645 1.54643 1.55012 1.93386 2.03835 2.10646 2.38117 2.49825 2.92106 3.28099 3.34010 3.57315 3.73798 3.89554 4.05376 4.10940 4.20332 4.28197 4.34285 4.51191 4.55984 4.62639 4.73224 4.88060 4.89568 5.00473 5.06884 5.09323 5.16544 5.29083 5.43311 5.45709 5.51061 5.57131 5.67171 5.73870 5.78345 6.17017 6.36363 6.56341 7.06468 7.17850 7.26684 7.76324 8.39782 9.24503 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.002518 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.502697 B =11117.231342 C =12196.369337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.097 0.903 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.241 4.241 7 H 0.089 0.911 8 C -0.070 4.070 9 N -0.952 5.952 10 Si 0.980 3.020 11 H -0.299 1.299 12 H -0.278 1.278 13 H -0.271 1.271 14 C 0.187 3.813 15 C 0.136 3.864 16 H 0.076 0.924 17 N -0.696 5.696 18 C 0.585 3.415 19 O -0.575 6.575 20 C -0.056 4.056 21 C -0.078 4.078 22 C -0.146 4.146 23 C 0.253 3.747 24 N -0.311 5.311 25 N -0.063 5.063 26 N -0.202 5.202 27 H 0.493 0.507 28 N -0.297 5.297 29 C 0.121 3.879 30 N -0.508 5.508 31 H 0.442 0.558 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.024 0.976 37 H 0.244 0.756 38 H -0.012 1.012 39 H 0.021 0.979 40 H 0.410 0.590 41 H 0.136 0.864 42 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.845 18.429 14.656 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.115 0.885 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.370 4.370 7 H 0.106 0.894 8 C -0.263 4.263 9 N -0.601 5.601 10 Si 0.808 3.192 11 H -0.225 1.225 12 H -0.204 1.204 13 H -0.196 1.196 14 C 0.060 3.940 15 C 0.030 3.970 16 H 0.094 0.906 17 N -0.346 5.346 18 C 0.373 3.627 19 O -0.454 6.454 20 C -0.168 4.168 21 C -0.106 4.106 22 C -0.156 4.156 23 C -0.026 4.026 24 N -0.183 5.183 25 N -0.059 5.059 26 N -0.053 5.053 27 H 0.352 0.648 28 N -0.150 5.150 29 C -0.023 4.023 30 N -0.105 5.105 31 H 0.284 0.716 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.039 0.961 40 H 0.247 0.753 41 H 0.154 0.846 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.774 17.272 15.143 25.371 hybrid contribution 1.401 0.020 -0.612 1.529 sum -9.372 17.292 14.531 24.454 Atomic orbital electron populations 1.21662 0.91739 1.02149 1.03179 1.22537 0.97222 0.99014 0.92320 0.88501 1.21868 0.85161 0.95849 0.96534 1.44722 1.09515 1.79227 1.01952 1.19465 0.90029 1.37689 0.89829 0.89367 1.25725 1.00727 1.02438 0.97412 1.70228 1.24192 1.54615 1.11082 0.85130 0.78203 0.78396 0.77481 1.22536 1.20434 1.19635 1.21129 0.92726 0.96574 0.83553 1.22103 0.96619 0.93671 0.84605 0.90614 1.45515 1.73427 1.11224 1.04448 1.17386 0.75886 0.86796 0.82615 1.90847 1.51853 1.16294 1.86439 1.19606 1.19215 0.84076 0.93908 1.20980 1.00182 0.99082 0.90329 1.16430 1.19297 0.94573 0.85287 1.22890 0.99998 0.84413 0.95341 1.76131 1.19912 1.27053 0.95182 1.78861 1.15016 0.94728 1.17247 1.47740 1.43632 1.06303 1.07659 0.64783 1.74830 1.23444 1.25726 0.91028 1.22450 0.98435 1.00170 0.81242 1.41749 1.53723 1.05696 1.09331 0.71604 0.93313 0.91086 0.90341 0.92461 0.95854 0.94707 0.99367 0.96110 0.75312 0.84562 0.75518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.30 71.98 0.67 -2.16 16 2 C -0.09 -2.69 3.27 -9.40 -0.03 -2.72 16 3 H 0.10 2.50 8.01 -2.39 -0.02 2.48 16 4 C 0.13 5.03 6.70 86.86 0.58 5.61 16 5 N -0.63 -32.24 3.39 -691.96 -2.35 -34.59 16 6 C -0.24 -13.56 10.28 84.03 0.86 -12.69 16 7 H 0.09 4.65 7.83 -2.91 -0.02 4.62 16 8 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 9 N -0.95 -59.55 10.31 21.65 0.22 -59.33 16 10 Si 0.98 46.52 29.55 68.60 2.03 48.54 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 C 0.19 9.55 5.13 86.73 0.45 10.00 16 15 C 0.14 5.07 2.78 46.18 0.13 5.20 16 16 H 0.08 3.12 7.42 -2.39 -0.02 3.10 16 17 N -0.70 -20.78 5.10 -440.80 -2.25 -23.03 16 18 C 0.58 19.97 7.79 86.46 0.67 20.65 16 19 O -0.58 -25.76 16.51 -4.33 -0.07 -25.83 16 20 C -0.06 -1.47 7.00 40.08 0.28 -1.19 16 21 C -0.08 -2.19 10.56 22.53 0.24 -1.95 16 22 C -0.15 -3.22 6.10 -20.30 -0.12 -3.34 16 23 C 0.25 5.79 8.18 137.40 1.12 6.91 16 24 N -0.31 -8.26 12.54 -52.16 -0.65 -8.91 16 25 N -0.06 -1.31 13.47 37.02 0.50 -0.81 16 26 N -0.20 -2.61 7.90 37.02 0.29 -2.31 16 27 H 0.49 1.06 8.96 -347.54 -3.12 -2.06 16 28 N -0.30 -5.01 12.39 -52.11 -0.65 -5.65 16 29 C 0.12 1.64 11.84 83.84 0.99 2.64 16 30 N -0.51 -7.57 5.95 -184.10 -1.09 -8.66 16 31 H 0.44 3.32 8.16 -92.71 -0.76 2.56 16 32 H 0.05 1.16 8.11 -2.39 -0.02 1.14 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 37 H 0.24 15.02 8.31 -92.70 -0.77 14.25 16 38 H -0.01 -0.74 7.52 -2.38 -0.02 -0.76 16 39 H 0.02 1.17 7.25 -2.39 -0.02 1.15 16 40 H 0.41 8.56 7.66 -92.71 -0.71 7.85 16 41 H 0.14 4.35 8.06 -2.92 -0.02 4.33 16 42 H 0.23 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -88.08 360.66 -1.19 -89.26 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -3.47 Total: 7.98 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 6.31 Total: 23.34 kcal Atomic # 7 Polarization: -137.32 SS G_CDS: -5.98 Total: -143.30 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.07 Total: -25.83 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -88.08 -1.19 -89.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591742616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.200 kcal (2) G-P(sol) polarization free energy of solvation -88.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds