Wall clock time and date at job start Tue Mar 31 2020 17:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.91782 * 2 1 4 4 C 1.54912 * 110.99964 * 236.09241 * 2 1 3 5 5 N 1.47428 * 104.83095 * 204.91758 * 4 2 1 6 6 C 1.36931 * 125.65100 * 204.09420 * 5 4 2 7 7 H 1.08002 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47339 * 180.02562 * 10 8 6 12 12 H 1.48493 * 109.47239 * 300.00542 * 10 8 6 13 13 H 1.48504 * 109.46636 * 60.00101 * 10 8 6 14 14 C 1.47032 * 108.70123 * 24.35753 * 5 4 2 15 15 C 1.54327 * 107.26586 * 358.58848 * 14 5 4 16 16 H 1.09000 * 110.51881 * 96.45074 * 15 14 5 17 17 N 1.46500 * 110.84789 * 219.67541 * 15 14 5 18 18 C 1.34778 * 119.99572 * 268.69019 * 17 15 14 19 19 O 1.21713 * 120.00267 * 359.97438 * 18 17 15 20 20 C 1.46606 * 120.00101 * 180.02562 * 18 17 15 21 21 C 1.38029 * 126.01055 * 179.69335 * 20 18 17 22 22 C 1.39395 * 107.43187 * 179.83561 * 21 20 18 23 23 C 1.37755 * 107.65178 * 0.41795 * 22 21 20 24 24 C 1.47917 * 125.82197 * 179.73570 * 23 22 21 25 25 N 1.34209 * 126.70155 * 179.68447 * 24 23 22 26 26 N 1.28980 * 107.24776 * 179.89496 * 25 24 23 27 27 N 1.28725 * 108.99659 * 0.37991 * 26 25 24 28 28 H 0.97001 * 125.31341 * 179.79536 * 27 26 25 29 29 N 1.28866 * 109.36577 * 359.75697 * 27 26 25 30 30 N 1.36392 * 108.35794 * 359.74163 * 23 22 21 31 31 H 0.97000 * 125.70954 * 179.97438 * 30 23 22 32 32 H 1.09001 * 109.47544 * 182.45090 * 1 2 3 33 33 H 1.09005 * 109.46735 * 302.45232 * 1 2 3 34 34 H 1.09002 * 109.47189 * 62.44977 * 1 2 3 35 35 H 1.08997 * 110.36341 * 86.08302 * 4 2 1 36 36 H 1.08991 * 110.46576 * 323.80381 * 4 2 1 37 37 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 38 38 H 1.09006 * 109.87698 * 118.13072 * 14 5 4 39 39 H 1.08994 * 109.88039 * 239.29140 * 14 5 4 40 40 H 0.96997 * 120.00874 * 88.69392 * 17 15 14 41 41 H 1.07999 * 126.28483 * 359.97438 * 21 20 18 42 42 H 1.07997 * 126.17470 * 180.11896 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7733 6 6 4.4639 -1.5670 -1.6071 7 1 4.3332 -1.5121 -2.6778 8 6 5.6833 -1.9647 -1.0763 9 7 5.8427 -2.0311 0.2286 10 14 7.0975 -2.4070 -2.2137 11 1 8.2801 -2.7966 -1.4047 12 1 6.6971 -3.5425 -3.0829 13 1 7.4391 -1.2340 -3.0578 14 6 3.4656 -1.2795 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4467 -1.6632 1.4211 17 7 2.2287 0.0496 2.3814 18 6 2.2004 -0.4914 3.6155 19 8 2.0560 -1.6924 3.7504 20 6 2.3425 0.3668 4.7956 21 6 2.3258 -0.0524 6.1106 22 6 2.4955 1.0763 6.9109 23 6 2.6038 2.1672 6.0768 24 6 2.7897 3.5704 6.5065 25 7 2.9031 4.6448 5.7102 26 7 3.0487 5.6735 6.4744 27 7 3.0389 5.2879 7.7025 28 1 3.1340 5.8690 8.4734 29 7 2.8823 4.0096 7.7478 30 7 2.5103 1.7330 4.7872 31 1 2.5543 2.2933 3.9966 32 1 -0.3634 -1.0267 0.0439 33 1 -0.3633 0.5515 0.8672 34 1 -0.3634 0.4753 -0.9111 35 1 2.1559 -0.1722 -2.0836 36 1 1.4524 -1.6705 -1.4042 37 1 6.6947 -2.3094 0.5996 38 1 3.6600 -2.2965 1.0368 39 1 4.2423 -0.6086 1.0631 40 1 2.3433 1.0068 2.2741 41 1 2.2056 -1.0686 6.4561 42 1 2.5306 1.0930 7.9902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591742667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:38 Heat of formation + Delta-G solvation = 161.490012 kcal Electronic energy + Delta-G solvation = -27534.507837 eV Core-core repulsion = 23554.265295 eV Total energy + Delta-G solvation = -3980.242542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.80305 -41.37693 -39.20043 -37.41713 -34.71294 -34.03304 -33.70612 -32.70339 -31.27493 -30.37736 -29.65917 -27.70125 -25.66434 -25.02551 -24.79822 -23.59908 -22.10208 -20.83347 -20.36113 -20.00436 -19.85984 -19.62340 -18.29302 -17.51484 -16.89350 -16.19818 -15.76996 -15.15597 -14.84444 -14.65413 -14.18817 -14.03521 -13.87612 -13.64645 -13.29500 -13.07428 -12.92545 -12.79902 -12.61476 -12.37362 -11.96990 -11.76268 -11.71421 -11.53346 -11.36025 -11.27480 -11.01932 -10.76108 -10.67751 -10.44224 -10.02148 -9.96307 -9.82549 -9.67230 -9.24717 -8.67013 -8.57142 -8.22124 -6.83313 -5.68262 -3.03660 0.54532 0.95251 1.79080 1.88262 2.64266 2.77382 3.33206 3.42114 3.42417 3.46529 3.48264 3.53488 3.93837 4.51257 4.85241 4.86410 5.04473 5.09539 5.09891 5.24832 5.29751 5.41723 5.55340 5.73516 5.80693 5.95147 5.96394 5.99399 6.01445 6.13098 6.17032 6.32037 6.42099 6.46552 6.61353 6.64099 6.68842 6.90425 7.02753 7.53272 7.57548 7.75667 7.78642 7.85176 8.26020 8.40785 9.22342 9.83075 10.47671 11.42324 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.002746 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.012709 B =10195.882320 C =10716.455741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.290 1.290 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.172 3.828 15 C 0.120 3.880 16 H 0.093 0.907 17 N -0.709 5.709 18 C 0.585 3.415 19 O -0.519 6.519 20 C -0.002 4.002 21 C -0.116 4.116 22 C -0.139 4.139 23 C 0.095 3.905 24 C 0.247 3.753 25 N -0.276 5.276 26 N -0.044 5.044 27 N -0.225 5.225 28 H 0.477 0.523 29 N -0.281 5.281 30 N -0.515 5.515 31 H 0.424 0.576 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.023 0.977 37 H 0.253 0.747 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.390 0.610 41 H 0.159 0.841 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 14.180 15.438 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.332 5.332 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.216 1.216 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.111 0.889 17 N -0.359 5.359 18 C 0.370 3.630 19 O -0.394 6.394 20 C -0.120 4.120 21 C -0.142 4.142 22 C -0.167 4.167 23 C -0.024 4.024 24 C -0.033 4.033 25 N -0.150 5.150 26 N -0.039 5.039 27 N -0.072 5.072 28 H 0.332 0.668 29 N -0.134 5.134 30 N -0.111 5.111 31 H 0.263 0.737 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.224 0.776 41 H 0.176 0.824 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.665 13.942 15.255 22.815 hybrid contribution 1.044 0.587 -0.397 1.262 sum -8.621 14.529 14.858 22.498 Atomic orbital electron populations 1.21700 0.94955 1.01845 1.01004 1.22625 0.94892 0.99479 0.96409 0.90521 1.21580 0.87638 0.95074 0.94276 1.44396 1.07874 1.79241 1.01736 1.18993 0.89284 1.38820 0.88891 0.90374 1.24831 0.97878 1.01660 0.96021 1.69957 1.24305 1.53124 1.09185 0.86195 0.81842 0.78252 0.79426 1.21610 1.21137 1.21216 1.21493 0.89930 1.00462 0.83444 1.22578 1.00623 0.92733 0.82498 0.88891 1.45846 1.73543 1.10688 1.05783 1.16932 0.77373 0.87070 0.81614 1.90877 1.49411 1.13524 1.85593 1.20839 1.13235 0.81416 0.96462 1.21264 1.03548 0.99688 0.89685 1.21111 1.06393 0.89805 0.99407 1.16820 1.14100 0.86980 0.84528 1.22484 1.01590 0.93898 0.85280 1.76187 1.18129 0.95073 1.25614 1.78893 1.14486 1.21812 0.88747 1.47747 1.45360 1.04685 1.09399 0.66810 1.74997 1.21675 0.94022 1.22667 1.41898 1.54761 1.07310 1.07177 0.73739 0.92498 0.93194 0.92695 0.93947 0.95950 0.93648 0.93274 0.93096 0.77645 0.82351 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.30 37.16 0.35 -1.44 16 2 C -0.11 -1.86 3.27 -88.47 -0.29 -2.15 16 3 H 0.08 1.19 8.01 -51.93 -0.42 0.77 16 4 C 0.14 2.82 6.70 -2.53 -0.02 2.81 16 5 N -0.61 -15.40 3.39 -170.06 -0.58 -15.98 16 6 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.46 10.31 55.49 0.57 -26.88 16 10 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.17 4.23 5.13 -3.06 -0.02 4.21 16 15 C 0.12 2.24 2.78 -66.09 -0.18 2.06 16 16 H 0.09 1.84 7.42 -51.93 -0.39 1.45 16 17 N -0.71 -11.11 5.10 -53.35 -0.27 -11.38 16 18 C 0.58 9.74 7.78 -12.88 -0.10 9.64 16 19 O -0.52 -10.60 16.52 5.18 0.09 -10.52 16 20 C 0.00 -0.03 7.04 -81.95 -0.58 -0.60 16 21 C -0.12 -1.44 10.60 -39.23 -0.42 -1.85 16 22 C -0.14 -1.49 10.79 -39.33 -0.42 -1.91 16 23 C 0.09 1.06 7.12 -82.05 -0.58 0.48 16 24 C 0.25 2.68 8.21 -156.24 -1.28 1.40 16 25 N -0.28 -3.13 12.54 32.09 0.40 -2.73 16 26 N -0.04 -0.41 13.46 60.35 0.81 0.40 16 27 N -0.23 -1.43 7.90 60.35 0.48 -0.96 16 28 H 0.48 0.63 8.96 -340.33 -3.05 -2.42 16 29 N -0.28 -2.52 12.39 32.10 0.40 -2.12 16 30 N -0.51 -5.81 6.03 -5.81 -0.04 -5.85 16 31 H 0.42 4.06 8.17 -40.82 -0.33 3.73 16 32 H 0.06 0.76 8.11 -51.93 -0.42 0.33 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.05 1.40 7.52 -51.93 -0.39 1.01 16 39 H 0.05 1.37 7.25 -51.93 -0.38 1.00 16 40 H 0.39 4.96 7.66 -40.82 -0.31 4.65 16 41 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 42 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -35.59 360.84 -9.28 -44.87 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.76 Total: 2.68 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -3.80 Total: 5.71 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: 1.78 Total: -65.49 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.59 -9.28 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591742667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.364 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds