Wall clock time and date at job start Tue Mar 31 2020 17:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.91782 * 2 1 4 4 C 1.54912 * 110.99964 * 236.09241 * 2 1 3 5 5 N 1.47428 * 104.83095 * 204.91758 * 4 2 1 6 6 C 1.36931 * 125.65100 * 204.09420 * 5 4 2 7 7 H 1.08002 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47339 * 180.02562 * 10 8 6 12 12 H 1.48493 * 109.47239 * 300.00542 * 10 8 6 13 13 H 1.48504 * 109.46636 * 60.00101 * 10 8 6 14 14 C 1.47032 * 108.70123 * 24.35753 * 5 4 2 15 15 C 1.54327 * 107.26586 * 358.58848 * 14 5 4 16 16 H 1.09000 * 110.51881 * 96.45074 * 15 14 5 17 17 N 1.46500 * 110.84789 * 219.67541 * 15 14 5 18 18 C 1.34778 * 119.99572 * 268.69019 * 17 15 14 19 19 O 1.21713 * 120.00267 * 359.97438 * 18 17 15 20 20 C 1.46606 * 120.00101 * 180.02562 * 18 17 15 21 21 C 1.38029 * 126.01055 * 179.69335 * 20 18 17 22 22 C 1.39395 * 107.43187 * 179.83561 * 21 20 18 23 23 C 1.37755 * 107.65178 * 0.41795 * 22 21 20 24 24 C 1.47917 * 125.82197 * 179.73570 * 23 22 21 25 25 N 1.34209 * 126.70155 * 179.68447 * 24 23 22 26 26 N 1.28980 * 107.24776 * 179.89496 * 25 24 23 27 27 N 1.28725 * 108.99659 * 0.37991 * 26 25 24 28 28 H 0.97001 * 125.31341 * 179.79536 * 27 26 25 29 29 N 1.28866 * 109.36577 * 359.75697 * 27 26 25 30 30 N 1.36392 * 108.35794 * 359.74163 * 23 22 21 31 31 H 0.97000 * 125.70954 * 179.97438 * 30 23 22 32 32 H 1.09001 * 109.47544 * 182.45090 * 1 2 3 33 33 H 1.09005 * 109.46735 * 302.45232 * 1 2 3 34 34 H 1.09002 * 109.47189 * 62.44977 * 1 2 3 35 35 H 1.08997 * 110.36341 * 86.08302 * 4 2 1 36 36 H 1.08991 * 110.46576 * 323.80381 * 4 2 1 37 37 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 38 38 H 1.09006 * 109.87698 * 118.13072 * 14 5 4 39 39 H 1.08994 * 109.88039 * 239.29140 * 14 5 4 40 40 H 0.96997 * 120.00874 * 88.69392 * 17 15 14 41 41 H 1.07999 * 126.28483 * 359.97438 * 21 20 18 42 42 H 1.07997 * 126.17470 * 180.11896 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7733 6 6 4.4639 -1.5670 -1.6071 7 1 4.3332 -1.5121 -2.6778 8 6 5.6833 -1.9647 -1.0763 9 7 5.8427 -2.0311 0.2286 10 14 7.0975 -2.4070 -2.2137 11 1 8.2801 -2.7966 -1.4047 12 1 6.6971 -3.5425 -3.0829 13 1 7.4391 -1.2340 -3.0578 14 6 3.4656 -1.2795 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4467 -1.6632 1.4211 17 7 2.2287 0.0496 2.3814 18 6 2.2004 -0.4914 3.6155 19 8 2.0560 -1.6924 3.7504 20 6 2.3425 0.3668 4.7956 21 6 2.3258 -0.0524 6.1106 22 6 2.4955 1.0763 6.9109 23 6 2.6038 2.1672 6.0768 24 6 2.7897 3.5704 6.5065 25 7 2.9031 4.6448 5.7102 26 7 3.0487 5.6735 6.4744 27 7 3.0389 5.2879 7.7025 28 1 3.1340 5.8690 8.4734 29 7 2.8823 4.0096 7.7478 30 7 2.5103 1.7330 4.7872 31 1 2.5543 2.2933 3.9966 32 1 -0.3634 -1.0267 0.0439 33 1 -0.3633 0.5515 0.8672 34 1 -0.3634 0.4753 -0.9111 35 1 2.1559 -0.1722 -2.0836 36 1 1.4524 -1.6705 -1.4042 37 1 6.6947 -2.3094 0.5996 38 1 3.6600 -2.2965 1.0368 39 1 4.2423 -0.6086 1.0631 40 1 2.3433 1.0068 2.2741 41 1 2.2056 -1.0686 6.4561 42 1 2.5306 1.0930 7.9902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591742667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:37 Heat of formation + Delta-G solvation = 133.835707 kcal Electronic energy + Delta-G solvation = -27535.707018 eV Core-core repulsion = 23554.265295 eV Total energy + Delta-G solvation = -3981.441723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.52368 -42.37214 -40.61025 -38.99917 -35.70262 -35.44403 -34.54875 -34.29019 -32.27239 -32.13042 -30.75480 -29.28382 -27.38456 -26.02175 -25.68751 -25.03798 -23.30182 -22.07323 -21.70491 -21.37893 -20.96829 -20.48994 -19.39220 -18.88484 -18.22449 -17.49323 -17.08460 -16.87889 -16.22213 -15.65318 -15.54099 -15.45443 -14.93708 -14.91280 -14.78914 -14.52527 -14.09181 -13.92629 -13.72316 -13.69870 -13.33615 -13.16983 -13.04004 -12.85212 -12.57420 -12.49557 -12.28448 -12.25861 -12.10952 -12.02199 -11.85679 -11.68491 -11.47747 -11.23818 -10.73747 -10.16778 -10.11568 -9.19749 -8.92377 -7.84336 -5.22141 -0.26655 0.14184 0.89111 1.20091 1.44533 1.48520 1.54838 1.81682 1.89919 2.04354 2.31172 2.49721 2.61790 3.16946 3.33795 3.54210 3.72006 3.84383 4.03415 4.04311 4.09148 4.20232 4.27920 4.39134 4.49615 4.61188 4.71580 4.88451 4.90201 5.05171 5.07284 5.13890 5.14080 5.27842 5.43766 5.46660 5.49849 5.57345 5.61710 5.73348 5.77288 6.13413 6.16855 6.48602 7.02469 7.05440 7.11983 7.75878 8.39510 9.24488 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.002746 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.012709 B =10195.882320 C =10716.455741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 H 0.091 0.909 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.088 0.912 8 C -0.070 4.070 9 N -0.952 5.952 10 Si 0.980 3.020 11 H -0.298 1.298 12 H -0.277 1.277 13 H -0.273 1.273 14 C 0.187 3.813 15 C 0.137 3.863 16 H 0.081 0.919 17 N -0.699 5.699 18 C 0.585 3.415 19 O -0.565 6.565 20 C -0.026 4.026 21 C -0.114 4.114 22 C -0.136 4.136 23 C 0.104 3.896 24 C 0.232 3.768 25 N -0.299 5.299 26 N -0.051 5.051 27 N -0.194 5.194 28 H 0.498 0.502 29 N -0.274 5.274 30 N -0.507 5.507 31 H 0.431 0.569 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.027 0.973 37 H 0.244 0.756 38 H -0.007 1.007 39 H 0.018 0.982 40 H 0.407 0.593 41 H 0.161 0.839 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.008 16.660 15.921 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 H 0.110 0.890 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.106 0.894 8 C -0.263 4.263 9 N -0.601 5.601 10 Si 0.808 3.192 11 H -0.224 1.224 12 H -0.203 1.203 13 H -0.199 1.199 14 C 0.060 3.940 15 C 0.031 3.969 16 H 0.099 0.901 17 N -0.349 5.349 18 C 0.373 3.627 19 O -0.444 6.444 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.163 4.163 23 C -0.016 4.016 24 C -0.048 4.048 25 N -0.172 5.172 26 N -0.045 5.045 27 N -0.046 5.046 28 H 0.357 0.643 29 N -0.127 5.127 30 N -0.104 5.104 31 H 0.271 0.729 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.011 0.989 39 H 0.036 0.964 40 H 0.243 0.757 41 H 0.179 0.821 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.829 16.498 15.709 25.223 hybrid contribution 1.389 -0.085 -0.442 1.460 sum -9.439 16.413 15.267 24.322 Atomic orbital electron populations 1.21655 0.91642 1.02299 1.03075 1.22550 0.97341 0.98886 0.92620 0.89050 1.21856 0.85229 0.95856 0.96354 1.44716 1.09515 1.79238 1.01955 1.19464 0.90096 1.37739 0.89815 0.89409 1.25727 1.00689 1.02408 0.97446 1.70226 1.24196 1.54569 1.11061 0.85122 0.78205 0.78355 0.77479 1.22419 1.20291 1.19855 1.21131 0.92594 0.96694 0.83566 1.22133 0.96762 0.93620 0.84409 0.90058 1.45638 1.73238 1.11201 1.04850 1.17321 0.76101 0.86859 0.82410 1.90846 1.51612 1.15631 1.86316 1.20327 1.16374 0.82162 0.95473 1.21468 1.02604 1.00489 0.89521 1.21351 1.05768 0.88702 1.00477 1.17036 1.12573 0.87579 0.84363 1.22421 1.02877 0.93647 0.85834 1.76175 1.19019 0.95481 1.26535 1.78850 1.14881 1.21351 0.89465 1.47829 1.42889 1.04242 1.09594 0.64257 1.74966 1.21028 0.94885 1.21834 1.41796 1.54375 1.06462 1.07779 0.72936 0.92913 0.91322 0.90412 0.92635 0.95522 0.94675 0.98912 0.96372 0.75701 0.82123 0.80341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.30 71.98 0.67 -2.30 16 2 C -0.09 -2.92 3.27 -9.40 -0.03 -2.95 16 3 H 0.09 2.61 8.01 -2.39 -0.02 2.59 16 4 C 0.13 5.19 6.70 86.86 0.58 5.78 16 5 N -0.63 -32.70 3.39 -691.96 -2.35 -35.05 16 6 C -0.24 -13.77 10.28 84.03 0.86 -12.91 16 7 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 8 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 9 N -0.95 -59.75 10.31 21.65 0.22 -59.53 16 10 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 11 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 C 0.19 9.66 5.13 86.73 0.45 10.11 16 15 C 0.14 5.20 2.78 46.18 0.13 5.33 16 16 H 0.08 3.33 7.42 -2.39 -0.02 3.31 16 17 N -0.70 -22.20 5.10 -440.90 -2.25 -24.45 16 18 C 0.58 20.11 7.78 86.43 0.67 20.78 16 19 O -0.57 -24.33 16.52 -4.39 -0.07 -24.40 16 20 C -0.03 -0.72 7.04 40.36 0.28 -0.43 16 21 C -0.11 -2.78 10.60 22.50 0.24 -2.54 16 22 C -0.14 -2.66 10.79 22.43 0.24 -2.42 16 23 C 0.10 2.17 7.12 40.89 0.29 2.47 16 24 C 0.23 4.56 8.21 137.11 1.13 5.68 16 25 N -0.30 -6.24 12.54 -52.40 -0.66 -6.90 16 26 N -0.05 -0.83 13.46 37.02 0.50 -0.33 16 27 N -0.19 -1.93 7.90 37.02 0.29 -1.63 16 28 H 0.50 -0.24 8.96 -347.50 -3.11 -3.36 16 29 N -0.27 -4.16 12.39 -52.35 -0.65 -4.81 16 30 N -0.51 -11.00 6.03 -172.28 -1.04 -12.04 16 31 H 0.43 7.84 8.17 -92.71 -0.76 7.08 16 32 H 0.05 1.28 8.11 -2.39 -0.02 1.26 16 33 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.03 1.04 8.04 -2.39 -0.02 1.02 16 37 H 0.24 15.07 8.31 -92.70 -0.77 14.30 16 38 H -0.01 -0.46 7.52 -2.38 -0.02 -0.48 16 39 H 0.02 1.04 7.25 -2.39 -0.02 1.02 16 40 H 0.41 10.11 7.66 -92.71 -0.71 9.40 16 41 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 42 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -81.41 360.84 -1.47 -82.88 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -3.47 Total: 14.40 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 5.98 Total: 22.97 kcal Atomic # 7 Polarization: -138.82 SS G_CDS: -5.93 Total: -144.75 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.07 Total: -24.40 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -81.41 -1.47 -82.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591742667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.712 kcal (2) G-P(sol) polarization free energy of solvation -81.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds