Wall clock time and date at job start Tue Mar 31 2020 17:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.87566 * 2 1 4 4 C 1.54325 * 109.88628 * 238.98313 * 2 1 3 5 5 H 1.08999 * 110.72560 * 144.25525 * 4 2 1 6 6 C 1.50703 * 110.71611 * 20.98128 * 4 2 1 7 7 O 1.20827 * 120.00315 * 270.51746 * 6 4 2 8 8 O 1.34231 * 120.00081 * 90.52201 * 6 4 2 9 9 C 1.55155 * 102.94266 * 262.62239 * 4 2 1 10 10 C 1.54909 * 101.58109 * 324.49388 * 9 4 2 11 11 N 1.47020 * 110.01223 * 121.09449 * 2 1 3 12 12 C 1.34769 * 125.64955 * 300.58494 * 11 2 1 13 13 O 1.21286 * 120.00063 * 359.97438 * 12 11 2 14 14 C 1.50705 * 120.00065 * 179.97438 * 12 11 2 15 15 C 1.53006 * 109.47226 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.46696 * 304.99980 * 15 14 12 17 17 C 1.50699 * 109.47135 * 64.99608 * 15 14 12 18 18 H 1.08001 * 120.00053 * 234.71304 * 17 15 14 19 19 C 1.37871 * 119.99822 * 54.72189 * 17 15 14 20 20 N 1.31518 * 120.00366 * 6.21485 * 19 17 15 21 21 Si 1.86809 * 120.00000 * 186.21795 * 19 17 15 22 22 H 1.48492 * 109.46881 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46995 * 119.99602 * 21 19 17 24 24 H 1.48497 * 109.46729 * 239.99965 * 21 19 17 25 25 C 1.50692 * 109.46965 * 185.00278 * 15 14 12 26 26 C 1.38237 * 120.00076 * 150.22358 * 25 15 14 27 27 C 1.38236 * 120.00089 * 179.80240 * 26 25 15 28 28 C 1.38235 * 120.00172 * 0.40295 * 27 26 25 29 29 C 1.38233 * 119.99485 * 359.85326 * 28 27 26 30 30 C 1.38233 * 120.00213 * 330.49437 * 25 15 14 31 31 H 1.08999 * 109.47570 * 183.05264 * 1 2 3 32 32 H 1.09002 * 109.47541 * 303.05754 * 1 2 3 33 33 H 1.08999 * 109.47380 * 63.05641 * 1 2 3 34 34 H 0.96697 * 117.00419 * 180.02562 * 8 6 4 35 35 H 1.09003 * 111.00522 * 206.41874 * 9 4 2 36 36 H 1.09005 * 111.00373 * 82.56611 * 9 4 2 37 37 H 1.09005 * 110.36823 * 155.84677 * 10 9 4 38 38 H 1.09001 * 110.36930 * 278.17320 * 10 9 4 39 39 H 1.09000 * 109.47073 * 300.00089 * 14 12 11 40 40 H 1.08995 * 109.47174 * 59.99939 * 14 12 11 41 41 H 0.96996 * 120.00187 * 180.02562 * 20 19 17 42 42 H 1.08003 * 119.99900 * 0.02562 * 26 25 15 43 43 H 1.08002 * 119.99957 * 180.22685 * 27 26 25 44 44 H 1.07996 * 120.00033 * 179.82839 * 28 27 26 45 45 H 1.08007 * 119.99792 * 179.97438 * 29 28 27 46 46 H 1.08003 * 119.99902 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 2.9641 -0.2793 -1.6203 6 6 0.9985 -0.8043 -2.3171 7 8 0.2168 -1.7250 -2.3476 8 8 0.9261 0.1684 -3.2393 9 6 2.3556 -2.1674 -0.6944 10 6 2.8618 -1.8472 0.7342 11 7 2.0330 -0.7134 1.1829 12 6 1.7783 -0.3858 2.4651 13 8 1.0792 0.5724 2.7188 14 6 2.3620 -1.2099 3.5837 15 6 1.9215 -0.6288 4.9289 16 1 2.1958 0.4251 4.9766 17 6 0.4274 -0.7658 5.0703 18 1 -0.1771 0.1040 5.2807 19 6 -0.1676 -2.0017 4.9312 20 7 0.5759 -3.0783 4.7972 21 14 -2.0300 -2.1472 4.9330 22 1 -2.6316 -0.7996 5.0980 23 1 -2.4817 -2.7374 3.6474 24 1 -2.4571 -3.0203 6.0557 25 6 2.6026 -1.3762 6.0461 26 6 2.8843 -0.7330 7.2369 27 6 3.5054 -1.4198 8.2633 28 6 3.8524 -2.7474 8.0960 29 6 3.5755 -3.3890 6.9033 30 6 2.9508 -2.7033 5.8783 31 1 -0.3634 -1.0262 0.0547 32 1 -0.3634 0.5606 0.8613 33 1 -0.3634 0.4656 -0.9161 34 1 0.2317 0.0890 -3.9076 35 1 3.1311 -2.6578 -1.2829 36 1 1.4503 -2.7735 -0.6615 37 1 2.7164 -2.7061 1.3895 38 1 3.9134 -1.5618 0.7091 39 1 2.0096 -2.2380 3.4997 40 1 3.4498 -1.1922 3.5186 41 1 0.1572 -3.9477 4.6990 42 1 2.6158 0.3050 7.3667 43 1 3.7222 -0.9183 9.1950 44 1 4.3402 -3.2831 8.8968 45 1 3.8470 -4.4261 6.7723 46 1 2.7344 -3.2047 4.9465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594145506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:59 Heat of formation + Delta-G solvation = -95.466846 kcal Electronic energy + Delta-G solvation = -29372.163077 eV Core-core repulsion = 25419.732891 eV Total energy + Delta-G solvation = -3952.430187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94460 -39.33410 -38.23842 -36.97122 -36.13777 -34.21970 -32.01203 -31.11909 -30.96524 -29.79789 -28.38971 -26.67254 -25.83587 -23.61621 -22.91662 -22.23140 -21.35659 -20.14868 -19.54015 -18.57151 -18.04644 -16.86051 -16.75153 -16.13523 -15.95175 -15.58463 -15.11190 -14.99747 -14.55217 -13.89220 -13.75555 -13.69935 -13.43377 -13.20601 -12.94903 -12.63864 -12.49355 -12.22628 -12.10449 -12.02417 -11.73251 -11.60831 -11.48501 -11.39630 -11.38747 -10.96989 -10.90470 -10.85665 -10.76451 -10.53765 -10.40291 -10.15980 -9.94020 -9.26253 -9.18145 -8.81055 -8.41390 -8.18645 -7.79094 -7.43164 -5.97096 -4.07512 2.02396 2.50879 2.59926 2.77853 3.30223 3.38609 3.45318 3.49468 3.65401 4.26250 4.42366 4.44192 4.83503 4.98831 5.08588 5.16022 5.24772 5.27872 5.42642 5.55883 5.64296 5.73455 5.81768 5.82472 5.85283 5.92689 6.02837 6.10186 6.19301 6.31571 6.35658 6.43723 6.53054 6.57183 6.69901 6.79147 6.81799 7.14146 7.16730 7.27851 7.46245 7.54958 7.70112 7.73423 7.93927 8.06616 8.17397 8.19491 8.34450 8.89535 9.11978 9.56037 10.95847 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.003809 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.705010 B = 7349.366793 C = 8143.488800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.096 4.096 5 H 0.115 0.885 6 C 0.495 3.505 7 O -0.508 6.508 8 O -0.517 6.517 9 C -0.120 4.120 10 C 0.105 3.895 11 N -0.629 5.629 12 C 0.543 3.457 13 O -0.519 6.519 14 C -0.131 4.131 15 C 0.087 3.913 16 H 0.037 0.963 17 C -0.469 4.469 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 C -0.028 4.028 26 C -0.132 4.132 27 C -0.142 4.142 28 C -0.154 4.154 29 C -0.144 4.144 30 C -0.066 4.066 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.409 0.591 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.053 0.947 41 H 0.260 0.740 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 1.070 -11.745 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.051 3.949 3 H 0.099 0.901 4 C -0.116 4.116 5 H 0.133 0.867 6 C 0.337 3.663 7 O -0.395 6.395 8 O -0.329 6.329 9 C -0.158 4.158 10 C -0.019 4.019 11 N -0.368 5.368 12 C 0.335 3.665 13 O -0.393 6.393 14 C -0.171 4.171 15 C 0.068 3.932 16 H 0.056 0.944 17 C -0.506 4.506 18 H 0.078 0.922 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.029 4.029 26 C -0.150 4.150 27 C -0.161 4.161 28 C -0.172 4.172 29 C -0.162 4.162 30 C -0.085 4.085 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.267 0.733 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.148 0.852 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.150 1.229 -11.205 13.348 hybrid contribution -1.699 -0.425 -0.435 1.805 sum 5.450 0.804 -11.640 12.878 Atomic orbital electron populations 1.22301 0.94692 1.03404 1.02555 1.21138 0.94885 0.95670 0.83183 0.90065 1.22162 0.96956 1.00456 0.92056 0.86704 1.22981 0.84024 0.78669 0.80598 1.90736 1.41022 1.34841 1.72882 1.84556 1.57369 1.49939 1.41051 1.22881 1.03359 0.93887 0.95709 1.22243 0.94671 0.90597 0.94375 1.48798 1.52358 1.30754 1.04876 1.20955 0.79828 0.84730 0.81036 1.90615 1.37249 1.28996 1.82411 1.21911 0.97431 1.03853 0.93918 1.17656 0.95033 0.93413 0.87109 0.94423 1.21014 0.90400 0.93658 1.45540 0.92229 1.24867 0.97923 0.95743 0.95322 1.69687 1.33927 0.98205 1.51066 0.86567 0.86276 0.78108 0.77403 1.19806 1.21117 1.21234 1.20314 0.91719 0.94820 0.96013 1.20899 1.00653 0.99439 0.94058 1.20790 1.02124 0.94924 0.98228 1.20765 1.03747 0.95168 0.97521 1.21050 1.01635 0.98878 0.94682 1.21400 0.93265 0.93823 0.99970 0.91682 0.89778 0.93031 0.73271 0.89388 0.88737 0.89390 0.91398 0.85160 0.92839 0.92988 0.87705 0.88133 0.88340 0.88116 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 8.07 37.15 0.30 -2.49 16 2 C 0.16 2.25 3.42 -66.96 -0.23 2.02 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.10 -1.06 3.38 -89.94 -0.30 -1.37 16 5 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 6 C 0.50 5.75 5.32 36.01 0.19 5.94 16 7 O -0.51 -7.41 15.93 -18.75 -0.30 -7.71 16 8 O -0.52 -4.57 13.42 -39.26 -0.53 -5.10 16 9 C -0.12 -1.31 6.39 -24.58 -0.16 -1.47 16 10 C 0.10 1.31 6.69 -2.53 -0.02 1.30 16 11 N -0.63 -10.37 3.08 -163.02 -0.50 -10.88 16 12 C 0.54 11.32 7.38 -10.99 -0.08 11.24 16 13 O -0.52 -12.56 13.93 5.55 0.08 -12.48 16 14 C -0.13 -2.75 3.12 -27.88 -0.09 -2.84 16 15 C 0.09 2.06 1.97 -92.92 -0.18 1.88 16 16 H 0.04 0.91 7.90 -51.93 -0.41 0.50 16 17 C -0.47 -12.48 7.27 -34.44 -0.25 -12.73 16 18 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 19 C 0.06 1.60 5.11 -17.82 -0.09 1.51 16 20 N -0.89 -22.50 7.89 55.43 0.44 -22.06 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C -0.03 -0.63 4.69 -104.63 -0.49 -1.13 16 26 C -0.13 -2.81 9.70 -39.58 -0.38 -3.19 16 27 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 28 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 29 C -0.14 -2.84 10.05 -39.58 -0.40 -3.24 16 30 C -0.07 -1.43 7.41 -39.58 -0.29 -1.73 16 31 H 0.06 1.16 7.79 -51.93 -0.40 0.76 16 32 H 0.08 1.60 6.84 -51.93 -0.36 1.25 16 33 H 0.05 0.72 6.91 -51.93 -0.36 0.36 16 34 H 0.41 1.92 9.10 45.56 0.41 2.34 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.24 7.22 -51.93 -0.37 0.87 16 37 H 0.09 1.16 7.48 -51.93 -0.39 0.78 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.13 2.90 4.47 -51.93 -0.23 2.67 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 42 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 46 H 0.14 3.11 5.10 -52.48 -0.27 2.85 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -31.49 367.09 -9.30 -40.79 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.73 Total: 7.98 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.27 Total: -12.71 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: -0.07 Total: -32.94 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.75 Total: -25.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.49 -9.30 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594145506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.675 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds