Wall clock time and date at job start Tue Mar 31 2020 17:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.87566 * 2 1 4 4 C 1.54325 * 109.88628 * 238.98313 * 2 1 3 5 5 H 1.08999 * 110.72560 * 144.25525 * 4 2 1 6 6 C 1.50703 * 110.71611 * 20.98128 * 4 2 1 7 7 O 1.20827 * 120.00315 * 270.51746 * 6 4 2 8 8 O 1.34231 * 120.00081 * 90.52201 * 6 4 2 9 9 C 1.55155 * 102.94266 * 262.62239 * 4 2 1 10 10 C 1.54909 * 101.58109 * 324.49388 * 9 4 2 11 11 N 1.47020 * 110.01223 * 121.09449 * 2 1 3 12 12 C 1.34769 * 125.64955 * 300.58494 * 11 2 1 13 13 O 1.21286 * 120.00063 * 359.97438 * 12 11 2 14 14 C 1.50705 * 120.00065 * 179.97438 * 12 11 2 15 15 C 1.53006 * 109.47226 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.46696 * 304.99980 * 15 14 12 17 17 C 1.50699 * 109.47135 * 64.99608 * 15 14 12 18 18 H 1.08001 * 120.00053 * 234.71304 * 17 15 14 19 19 C 1.37871 * 119.99822 * 54.72189 * 17 15 14 20 20 N 1.31518 * 120.00366 * 6.21485 * 19 17 15 21 21 Si 1.86809 * 120.00000 * 186.21795 * 19 17 15 22 22 H 1.48492 * 109.46881 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46995 * 119.99602 * 21 19 17 24 24 H 1.48497 * 109.46729 * 239.99965 * 21 19 17 25 25 C 1.50692 * 109.46965 * 185.00278 * 15 14 12 26 26 C 1.38237 * 120.00076 * 150.22358 * 25 15 14 27 27 C 1.38236 * 120.00089 * 179.80240 * 26 25 15 28 28 C 1.38235 * 120.00172 * 0.40295 * 27 26 25 29 29 C 1.38233 * 119.99485 * 359.85326 * 28 27 26 30 30 C 1.38233 * 120.00213 * 330.49437 * 25 15 14 31 31 H 1.08999 * 109.47570 * 183.05264 * 1 2 3 32 32 H 1.09002 * 109.47541 * 303.05754 * 1 2 3 33 33 H 1.08999 * 109.47380 * 63.05641 * 1 2 3 34 34 H 0.96697 * 117.00419 * 180.02562 * 8 6 4 35 35 H 1.09003 * 111.00522 * 206.41874 * 9 4 2 36 36 H 1.09005 * 111.00373 * 82.56611 * 9 4 2 37 37 H 1.09005 * 110.36823 * 155.84677 * 10 9 4 38 38 H 1.09001 * 110.36930 * 278.17320 * 10 9 4 39 39 H 1.09000 * 109.47073 * 300.00089 * 14 12 11 40 40 H 1.08995 * 109.47174 * 59.99939 * 14 12 11 41 41 H 0.96996 * 120.00187 * 180.02562 * 20 19 17 42 42 H 1.08003 * 119.99900 * 0.02562 * 26 25 15 43 43 H 1.08002 * 119.99957 * 180.22685 * 27 26 25 44 44 H 1.07996 * 120.00033 * 179.82839 * 28 27 26 45 45 H 1.08007 * 119.99792 * 179.97438 * 29 28 27 46 46 H 1.08003 * 119.99902 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 2.9641 -0.2793 -1.6203 6 6 0.9985 -0.8043 -2.3171 7 8 0.2168 -1.7250 -2.3476 8 8 0.9261 0.1684 -3.2393 9 6 2.3556 -2.1674 -0.6944 10 6 2.8618 -1.8472 0.7342 11 7 2.0330 -0.7134 1.1829 12 6 1.7783 -0.3858 2.4651 13 8 1.0792 0.5724 2.7188 14 6 2.3620 -1.2099 3.5837 15 6 1.9215 -0.6288 4.9289 16 1 2.1958 0.4251 4.9766 17 6 0.4274 -0.7658 5.0703 18 1 -0.1771 0.1040 5.2807 19 6 -0.1676 -2.0017 4.9312 20 7 0.5759 -3.0783 4.7972 21 14 -2.0300 -2.1472 4.9330 22 1 -2.6316 -0.7996 5.0980 23 1 -2.4817 -2.7374 3.6474 24 1 -2.4571 -3.0203 6.0557 25 6 2.6026 -1.3762 6.0461 26 6 2.8843 -0.7330 7.2369 27 6 3.5054 -1.4198 8.2633 28 6 3.8524 -2.7474 8.0960 29 6 3.5755 -3.3890 6.9033 30 6 2.9508 -2.7033 5.8783 31 1 -0.3634 -1.0262 0.0547 32 1 -0.3634 0.5606 0.8613 33 1 -0.3634 0.4656 -0.9161 34 1 0.2317 0.0890 -3.9076 35 1 3.1311 -2.6578 -1.2829 36 1 1.4503 -2.7735 -0.6615 37 1 2.7164 -2.7061 1.3895 38 1 3.9134 -1.5618 0.7091 39 1 2.0096 -2.2380 3.4997 40 1 3.4498 -1.1922 3.5186 41 1 0.1572 -3.9477 4.6990 42 1 2.6158 0.3050 7.3667 43 1 3.7222 -0.9183 9.1950 44 1 4.3402 -3.2831 8.8968 45 1 3.8470 -4.4261 6.7723 46 1 2.7344 -3.2047 4.9465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594145506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:58 Heat of formation + Delta-G solvation = -113.702116 kcal Electronic energy + Delta-G solvation = -29372.953818 eV Core-core repulsion = 25419.732891 eV Total energy + Delta-G solvation = -3953.220927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.96195 -40.68163 -39.75390 -38.31564 -37.05203 -36.01862 -33.38764 -32.80247 -32.20840 -31.37266 -29.97864 -28.00852 -27.47536 -25.05643 -24.04888 -23.67845 -22.89708 -21.50639 -20.79283 -19.93088 -19.02517 -18.34694 -17.90682 -17.73592 -17.21031 -16.99799 -16.81566 -16.24488 -16.11844 -15.45669 -15.35592 -15.11668 -14.64665 -14.52590 -14.33507 -13.99496 -13.77111 -13.66668 -13.46636 -13.36214 -13.21113 -13.17015 -12.99678 -12.85059 -12.73321 -12.62588 -12.48326 -12.24341 -12.01878 -11.89749 -11.79665 -11.68836 -11.53310 -11.04820 -11.02193 -10.61438 -10.25915 -9.54132 -9.37679 -9.10562 -7.95368 -6.11382 0.90940 1.02626 1.10298 1.30060 1.34875 1.44217 1.88124 1.99257 2.36298 2.42153 3.17929 3.28997 3.39602 3.43522 3.87168 4.11316 4.16185 4.24093 4.29678 4.32807 4.35870 4.43851 4.47263 4.53771 4.64766 4.71469 4.77664 4.79516 4.89989 4.90506 4.94387 5.10033 5.14775 5.16496 5.20592 5.34239 5.55403 5.58055 5.60801 5.64171 5.70342 5.89295 5.96812 6.12080 6.36265 6.43978 6.60058 6.69241 6.83699 6.97813 7.50389 7.54825 8.92135 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.003809 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.705010 B = 7349.366793 C = 8143.488800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 H 0.089 0.911 4 C -0.086 4.086 5 H 0.155 0.845 6 C 0.500 3.500 7 O -0.543 6.543 8 O -0.508 6.508 9 C -0.112 4.112 10 C 0.097 3.903 11 N -0.628 5.628 12 C 0.536 3.464 13 O -0.567 6.567 14 C -0.119 4.119 15 C 0.088 3.912 16 H 0.016 0.984 17 C -0.487 4.487 18 H 0.026 0.974 19 C 0.038 3.962 20 N -0.882 5.882 21 Si 0.921 3.079 22 H -0.288 1.288 23 H -0.285 1.285 24 H -0.278 1.278 25 C -0.052 4.052 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.148 4.148 29 C -0.148 4.148 30 C -0.078 4.078 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.428 0.572 35 H 0.129 0.871 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.261 0.739 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.126 0.874 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 -0.223 -12.590 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.107 0.893 4 C -0.105 4.105 5 H 0.173 0.827 6 C 0.343 3.657 7 O -0.433 6.433 8 O -0.321 6.321 9 C -0.150 4.150 10 C -0.025 4.025 11 N -0.365 5.365 12 C 0.327 3.673 13 O -0.444 6.444 14 C -0.159 4.159 15 C 0.069 3.931 16 H 0.034 0.966 17 C -0.525 4.525 18 H 0.044 0.956 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.749 3.251 22 H -0.213 1.213 23 H -0.211 1.211 24 H -0.204 1.204 25 C -0.052 4.052 26 C -0.170 4.170 27 C -0.159 4.159 28 C -0.166 4.166 29 C -0.166 4.166 30 C -0.096 4.096 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.290 0.710 35 H 0.147 0.853 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.144 0.856 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.592 -0.090 -12.100 15.441 hybrid contribution -2.430 0.018 -0.195 2.438 sum 7.163 -0.072 -12.295 14.230 Atomic orbital electron populations 1.22184 0.96568 1.01396 1.01949 1.21293 0.93427 0.96649 0.84098 0.89343 1.22171 0.98099 1.00081 0.90195 0.82711 1.23019 0.83401 0.78402 0.80838 1.90741 1.42265 1.36368 1.73882 1.84509 1.58090 1.48545 1.41002 1.22858 1.03393 0.93767 0.94997 1.22580 0.95878 0.88918 0.95111 1.48714 1.51918 1.31643 1.04180 1.20921 0.79513 0.84250 0.82600 1.90591 1.39307 1.30949 1.83578 1.21697 0.98674 1.02691 0.92805 1.17545 0.93528 0.92703 0.89346 0.96596 1.20960 0.92086 0.92740 1.46702 0.95597 1.25151 0.99640 0.95798 0.95563 1.69765 1.33920 0.97905 1.50552 0.86076 0.84335 0.77223 0.77429 1.21318 1.21096 1.20407 1.20274 0.93274 0.95530 0.96139 1.21081 1.01616 0.99801 0.94541 1.21144 1.00763 0.95375 0.98610 1.21196 1.02506 0.94971 0.97954 1.21367 1.00734 1.00055 0.94419 1.21352 0.94284 0.93451 1.00532 0.93921 0.93418 0.90886 0.71029 0.85317 0.91429 0.90395 0.87898 0.86236 0.90528 0.92907 0.87961 0.85091 0.84684 0.85594 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.47 8.07 71.98 0.58 -4.89 16 2 C 0.15 4.20 3.42 45.34 0.16 4.36 16 3 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 4 C -0.09 -1.65 3.38 -10.35 -0.04 -1.69 16 5 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 6 C 0.50 10.49 5.32 71.24 0.38 10.87 16 7 O -0.54 -15.28 15.93 21.96 0.35 -14.93 16 8 O -0.51 -7.46 13.42 -51.43 -0.69 -8.15 16 9 C -0.11 -2.17 6.39 31.99 0.20 -1.96 16 10 C 0.10 2.25 6.69 86.85 0.58 2.83 16 11 N -0.63 -20.65 3.08 -788.05 -2.43 -23.08 16 12 C 0.54 23.16 7.38 87.66 0.65 23.81 16 13 O -0.57 -29.16 13.93 -3.05 -0.04 -29.20 16 14 C -0.12 -5.11 3.12 29.85 0.09 -5.02 16 15 C 0.09 4.37 1.97 -12.29 -0.02 4.34 16 16 H 0.02 0.82 7.90 -2.38 -0.02 0.80 16 17 C -0.49 -27.38 7.27 25.60 0.19 -27.19 16 18 H 0.03 1.58 7.82 -2.91 -0.02 1.55 16 19 C 0.04 2.05 5.11 84.65 0.43 2.48 16 20 N -0.88 -45.25 7.89 21.45 0.17 -45.08 16 21 Si 0.92 45.62 29.54 68.60 2.03 47.64 16 22 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 23 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 24 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 25 C -0.05 -2.37 4.69 -19.87 -0.09 -2.47 16 26 C -0.15 -6.47 9.70 22.27 0.22 -6.26 16 27 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 28 C -0.15 -5.05 10.05 22.27 0.22 -4.83 16 29 C -0.15 -5.45 10.05 22.27 0.22 -5.23 16 30 C -0.08 -3.33 7.41 22.27 0.16 -3.16 16 31 H 0.04 1.59 7.79 -2.39 -0.02 1.57 16 32 H 0.05 1.94 6.84 -2.39 -0.02 1.92 16 33 H 0.07 2.05 6.91 -2.39 -0.02 2.04 16 34 H 0.43 2.85 9.10 -74.06 -0.67 2.18 16 35 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.72 7.22 -2.38 -0.02 1.70 16 37 H 0.08 1.99 7.48 -2.38 -0.02 1.97 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.12 5.45 4.47 -2.39 -0.01 5.43 16 40 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.26 12.98 8.31 -92.71 -0.77 12.21 16 42 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 44 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 46 H 0.13 5.82 5.10 -2.91 -0.01 5.80 16 Total: -1.00 -72.62 367.09 3.87 -68.74 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.33 Total: 22.91 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.16 Total: -18.86 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -2.26 Total: -68.16 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -0.38 Total: -52.29 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -72.62 3.87 -68.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594145506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.959 kcal (2) G-P(sol) polarization free energy of solvation -72.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds