Wall clock time and date at job start Tue Mar 31 2020 17:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.00195 * 2 1 4 4 C 1.54321 * 109.87864 * 238.89984 * 2 1 3 5 5 H 1.09000 * 110.72743 * 336.75779 * 4 2 1 6 6 C 1.50704 * 110.87048 * 99.95870 * 4 2 1 7 7 O 1.20820 * 119.99994 * 355.06688 * 6 4 2 8 8 O 1.34231 * 120.00140 * 175.06080 * 6 4 2 9 9 C 1.55157 * 102.94490 * 218.39071 * 4 2 1 10 10 C 1.54906 * 101.57982 * 35.50364 * 9 4 2 11 11 N 1.47020 * 109.88382 * 121.09781 * 2 1 3 12 12 C 1.34787 * 125.64440 * 298.62064 * 11 2 1 13 13 O 1.21279 * 119.99988 * 359.71291 * 12 11 2 14 14 C 1.50701 * 119.99569 * 179.71084 * 12 11 2 15 15 C 1.53005 * 109.46644 * 179.97438 * 14 12 11 16 16 H 1.09009 * 109.46877 * 55.00671 * 15 14 12 17 17 C 1.50698 * 109.47417 * 295.00530 * 15 14 12 18 18 H 1.07998 * 119.99990 * 325.84189 * 17 15 14 19 19 C 1.37872 * 119.99983 * 145.84515 * 17 15 14 20 20 N 1.31519 * 120.00222 * 6.11533 * 19 17 15 21 21 Si 1.86800 * 119.99890 * 186.11895 * 19 17 15 22 22 H 1.48497 * 109.47169 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47197 * 120.00024 * 21 19 17 24 24 H 1.48500 * 109.47086 * 239.99875 * 21 19 17 25 25 C 1.50699 * 109.46886 * 175.00050 * 15 14 12 26 26 C 1.38241 * 119.99867 * 63.47603 * 25 15 14 27 27 C 1.38232 * 119.99925 * 179.80787 * 26 25 15 28 28 C 1.38237 * 119.99776 * 0.39699 * 27 26 25 29 29 C 1.38233 * 120.00348 * 359.85322 * 28 27 26 30 30 C 1.38232 * 120.00004 * 359.96106 * 29 28 27 31 31 H 1.09008 * 109.46915 * 300.35961 * 1 2 3 32 32 H 1.08997 * 109.47107 * 60.35503 * 1 2 3 33 33 H 1.08995 * 109.47377 * 180.35965 * 1 2 3 34 34 H 0.96695 * 117.00361 * 179.97438 * 8 6 4 35 35 H 1.09005 * 111.00728 * 277.43140 * 9 4 2 36 36 H 1.09001 * 111.00498 * 153.57828 * 9 4 2 37 37 H 1.09002 * 110.37141 * 204.15215 * 10 9 4 38 38 H 1.09003 * 110.36796 * 81.83100 * 10 9 4 39 39 H 1.08997 * 109.47394 * 299.99735 * 14 12 11 40 40 H 1.08999 * 109.47098 * 60.00261 * 14 12 11 41 41 H 0.96998 * 119.99698 * 179.97438 * 20 19 17 42 42 H 1.08001 * 119.99863 * 359.97438 * 26 25 15 43 43 H 1.08002 * 120.00050 * 180.22627 * 27 26 25 44 44 H 1.08005 * 119.99629 * 179.83257 * 28 27 26 45 45 H 1.08000 * 120.00179 * 179.97438 * 29 28 27 46 46 H 1.07999 * 120.00590 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7496 -1.2427 5 1 1.3050 -1.4460 -1.6182 6 6 2.4663 0.2199 -2.3205 7 8 2.2771 1.4040 -2.1723 8 8 3.0432 -0.2319 -3.4451 9 6 3.2875 -1.5144 -0.6924 10 6 2.8145 -1.8795 0.7368 11 7 2.0300 -0.7141 1.1839 12 6 1.8038 -0.3645 2.4658 13 8 1.1404 0.6189 2.7181 14 6 2.3752 -1.1956 3.5855 15 6 1.9738 -0.5851 4.9298 16 1 0.8893 -0.4838 4.9735 17 6 2.6113 0.7726 5.0755 18 1 3.5904 0.9569 4.6585 19 6 1.9447 1.7794 5.7410 20 7 0.8085 1.5238 6.3520 21 14 2.6554 3.5066 5.7748 22 1 3.9325 3.5312 5.0175 23 1 1.6928 4.4502 5.1518 24 1 2.9056 3.9114 7.1815 25 6 2.4399 -1.4816 6.0478 26 6 3.7912 -1.7015 6.2397 27 6 4.2189 -2.5207 7.2677 28 6 3.2952 -3.1265 8.0987 29 6 1.9438 -2.9107 7.9037 30 6 1.5161 -2.0885 6.8781 31 1 -0.3633 0.5195 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 -0.3634 -1.0276 0.0065 34 1 3.2894 0.4277 -4.1079 35 1 4.1654 -0.8690 -0.6604 36 1 3.4850 -2.4112 -1.2796 37 1 3.6715 -2.0339 1.3923 38 1 2.1885 -2.7716 0.7129 39 1 1.9880 -2.2122 3.5176 40 1 3.4621 -1.2147 3.5056 41 1 0.3398 2.2320 6.8205 42 1 4.5127 -1.2312 5.5881 43 1 5.2747 -2.6896 7.4199 44 1 3.6293 -3.7687 8.9002 45 1 1.2221 -3.3844 8.5527 46 1 0.4604 -1.9195 6.7258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594145507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:02 Heat of formation + Delta-G solvation = -103.054414 kcal Electronic energy + Delta-G solvation = -28777.840259 eV Core-core repulsion = 24825.081051 eV Total energy + Delta-G solvation = -3952.759208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89685 -39.42875 -38.35207 -37.03023 -36.29180 -33.97134 -32.09270 -31.38669 -31.20146 -29.99296 -28.70168 -26.78688 -25.55756 -23.51424 -22.80186 -22.29764 -21.59431 -20.59906 -19.54935 -18.65952 -18.01408 -17.31340 -16.63546 -16.31420 -15.85968 -15.60347 -15.31491 -14.73571 -14.32687 -14.11827 -13.85227 -13.81614 -13.78099 -13.49369 -12.86675 -12.83086 -12.55171 -12.35870 -12.20608 -12.01591 -11.99611 -11.77452 -11.65218 -11.53372 -11.44813 -11.13931 -10.89983 -10.83570 -10.70561 -10.56386 -10.51581 -10.24018 -10.04230 -9.41992 -9.03090 -8.84061 -8.32790 -8.21465 -8.03046 -7.58978 -5.91069 -3.90254 1.96106 2.30311 2.35855 2.65140 3.39794 3.45156 3.48118 3.50159 3.53492 4.12713 4.28805 4.55085 4.69441 4.76586 5.00922 5.09341 5.15865 5.37833 5.44745 5.49578 5.54406 5.64500 5.67355 5.68402 5.74426 5.79901 5.85799 5.87972 6.10089 6.16641 6.21461 6.27065 6.30676 6.42678 6.43895 6.54799 6.69484 6.84664 6.93455 7.06878 7.32515 7.46025 7.54587 7.64039 7.88343 7.96853 8.02437 8.09703 8.40611 9.05689 9.09983 9.72050 11.19167 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.003705 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.127905 B = 7555.631324 C = 8886.578367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.090 0.910 4 C -0.094 4.094 5 H 0.123 0.877 6 C 0.489 3.511 7 O -0.505 6.505 8 O -0.516 6.516 9 C -0.119 4.119 10 C 0.103 3.897 11 N -0.634 5.634 12 C 0.531 3.469 13 O -0.486 6.486 14 C -0.116 4.116 15 C 0.079 3.921 16 H 0.072 0.928 17 C -0.491 4.491 18 H 0.050 0.950 19 C 0.079 3.921 20 N -0.881 5.881 21 Si 0.886 3.114 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.287 1.287 25 C -0.020 4.020 26 C -0.116 4.116 27 C -0.132 4.132 28 C -0.156 4.156 29 C -0.128 4.128 30 C -0.119 4.119 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.410 0.590 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.258 0.742 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 -11.368 -14.570 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 H 0.108 0.892 4 C -0.114 4.114 5 H 0.141 0.859 6 C 0.330 3.670 7 O -0.392 6.392 8 O -0.328 6.328 9 C -0.157 4.157 10 C -0.021 4.021 11 N -0.374 5.374 12 C 0.321 3.679 13 O -0.356 6.356 14 C -0.156 4.156 15 C 0.060 3.940 16 H 0.090 0.910 17 C -0.529 4.529 18 H 0.069 0.931 19 C -0.124 4.124 20 N -0.518 5.518 21 Si 0.714 3.286 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.214 1.214 25 C -0.021 4.021 26 C -0.134 4.134 27 C -0.150 4.150 28 C -0.174 4.174 29 C -0.146 4.146 30 C -0.137 4.137 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.269 0.731 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.541 -10.630 -13.841 17.807 hybrid contribution 0.600 1.506 -0.376 1.664 sum 4.140 -9.124 -14.216 17.392 Atomic orbital electron populations 1.22130 0.94324 1.02015 1.03407 1.21256 0.94910 0.96911 0.82528 0.89176 1.22123 1.00562 0.96623 0.92086 0.85920 1.23117 0.73584 0.88558 0.81750 1.90768 1.51243 1.18454 1.78701 1.84517 1.73071 1.45914 1.29255 1.22794 0.96075 1.00744 0.96098 1.22227 0.95965 0.89618 0.94278 1.48862 1.54794 1.28610 1.05095 1.20677 0.80472 0.85895 0.80893 1.90765 1.37184 1.25796 1.81869 1.21788 1.00758 0.97422 0.95606 1.17856 0.99847 0.91797 0.84490 0.90978 1.20705 1.02810 0.93956 1.35404 0.93143 1.24791 0.94611 0.98309 0.94660 1.69920 1.15814 1.32555 1.33514 0.86648 0.79157 0.85592 0.77183 1.19981 1.21003 1.21395 1.20726 0.92466 0.91124 0.97738 1.20942 0.96141 0.98122 0.98156 1.20970 0.98285 0.99074 0.96656 1.20791 0.93540 1.02574 1.00501 1.20981 0.95347 0.99852 0.98436 1.21088 0.99666 0.96993 0.95945 0.90135 0.92282 0.92623 0.73119 0.90081 0.88704 0.89897 0.91289 0.91667 0.90584 0.93202 0.86948 0.87697 0.87835 0.87662 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.10 37.16 0.34 -1.94 16 2 C 0.15 2.13 2.86 -66.95 -0.19 1.93 16 3 H 0.09 1.58 6.89 -51.93 -0.36 1.22 16 4 C -0.09 -0.94 2.97 -89.94 -0.27 -1.21 16 5 H 0.12 0.96 7.85 -51.93 -0.41 0.55 16 6 C 0.49 5.24 7.63 36.01 0.27 5.52 16 7 O -0.50 -7.39 16.24 -18.75 -0.30 -7.69 16 8 O -0.52 -3.83 13.41 -39.26 -0.53 -4.35 16 9 C -0.12 -1.01 6.51 -24.58 -0.16 -1.17 16 10 C 0.10 1.08 6.69 -2.53 -0.02 1.06 16 11 N -0.63 -9.75 3.07 -163.02 -0.50 -10.25 16 12 C 0.53 10.69 7.39 -10.98 -0.08 10.61 16 13 O -0.49 -12.21 14.01 5.56 0.08 -12.14 16 14 C -0.12 -2.22 3.96 -27.88 -0.11 -2.33 16 15 C 0.08 1.88 1.67 -92.92 -0.16 1.73 16 16 H 0.07 1.97 6.98 -51.92 -0.36 1.61 16 17 C -0.49 -13.26 6.37 -34.44 -0.22 -13.48 16 18 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 19 C 0.08 2.27 5.45 -17.82 -0.10 2.17 16 20 N -0.88 -26.07 12.87 55.43 0.71 -25.35 16 21 Si 0.89 22.70 29.54 -169.99 -5.02 17.68 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C -0.02 -0.44 4.77 -104.62 -0.50 -0.94 16 26 C -0.12 -2.31 8.86 -39.58 -0.35 -2.66 16 27 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 28 C -0.16 -2.70 10.05 -39.58 -0.40 -3.10 16 29 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 30 C -0.12 -2.50 9.67 -39.58 -0.38 -2.88 16 31 H 0.08 1.42 6.87 -51.92 -0.36 1.07 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.41 1.44 9.10 45.56 0.41 1.85 16 35 H 0.08 0.73 8.04 -51.93 -0.42 0.32 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.82 7.49 -51.93 -0.39 0.44 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.35 7.48 -51.93 -0.39 0.96 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.11 2.17 7.76 -52.49 -0.41 1.76 16 43 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16 45 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.11 2.41 7.95 -52.49 -0.42 1.99 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -35.20 381.93 -8.93 -44.14 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.02 Total: 4.39 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.11 Total: -12.17 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.21 Total: -35.61 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.75 Total: -24.18 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.20 -8.93 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594145507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.918 kcal (2) G-P(sol) polarization free energy of solvation -35.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds