Wall clock time and date at job start Tue Mar 31 2020 17:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.00195 * 2 1 4 4 C 1.54321 * 109.87864 * 238.89984 * 2 1 3 5 5 H 1.09000 * 110.72743 * 336.75779 * 4 2 1 6 6 C 1.50704 * 110.87048 * 99.95870 * 4 2 1 7 7 O 1.20820 * 119.99994 * 355.06688 * 6 4 2 8 8 O 1.34231 * 120.00140 * 175.06080 * 6 4 2 9 9 C 1.55157 * 102.94490 * 218.39071 * 4 2 1 10 10 C 1.54906 * 101.57982 * 35.50364 * 9 4 2 11 11 N 1.47020 * 109.88382 * 121.09781 * 2 1 3 12 12 C 1.34787 * 125.64440 * 298.62064 * 11 2 1 13 13 O 1.21279 * 119.99988 * 359.71291 * 12 11 2 14 14 C 1.50701 * 119.99569 * 179.71084 * 12 11 2 15 15 C 1.53005 * 109.46644 * 179.97438 * 14 12 11 16 16 H 1.09009 * 109.46877 * 55.00671 * 15 14 12 17 17 C 1.50698 * 109.47417 * 295.00530 * 15 14 12 18 18 H 1.07998 * 119.99990 * 325.84189 * 17 15 14 19 19 C 1.37872 * 119.99983 * 145.84515 * 17 15 14 20 20 N 1.31519 * 120.00222 * 6.11533 * 19 17 15 21 21 Si 1.86800 * 119.99890 * 186.11895 * 19 17 15 22 22 H 1.48497 * 109.47169 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47197 * 120.00024 * 21 19 17 24 24 H 1.48500 * 109.47086 * 239.99875 * 21 19 17 25 25 C 1.50699 * 109.46886 * 175.00050 * 15 14 12 26 26 C 1.38241 * 119.99867 * 63.47603 * 25 15 14 27 27 C 1.38232 * 119.99925 * 179.80787 * 26 25 15 28 28 C 1.38237 * 119.99776 * 0.39699 * 27 26 25 29 29 C 1.38233 * 120.00348 * 359.85322 * 28 27 26 30 30 C 1.38232 * 120.00004 * 359.96106 * 29 28 27 31 31 H 1.09008 * 109.46915 * 300.35961 * 1 2 3 32 32 H 1.08997 * 109.47107 * 60.35503 * 1 2 3 33 33 H 1.08995 * 109.47377 * 180.35965 * 1 2 3 34 34 H 0.96695 * 117.00361 * 179.97438 * 8 6 4 35 35 H 1.09005 * 111.00728 * 277.43140 * 9 4 2 36 36 H 1.09001 * 111.00498 * 153.57828 * 9 4 2 37 37 H 1.09002 * 110.37141 * 204.15215 * 10 9 4 38 38 H 1.09003 * 110.36796 * 81.83100 * 10 9 4 39 39 H 1.08997 * 109.47394 * 299.99735 * 14 12 11 40 40 H 1.08999 * 109.47098 * 60.00261 * 14 12 11 41 41 H 0.96998 * 119.99698 * 179.97438 * 20 19 17 42 42 H 1.08001 * 119.99863 * 359.97438 * 26 25 15 43 43 H 1.08002 * 120.00050 * 180.22627 * 27 26 25 44 44 H 1.08005 * 119.99629 * 179.83257 * 28 27 26 45 45 H 1.08000 * 120.00179 * 179.97438 * 29 28 27 46 46 H 1.07999 * 120.00590 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7496 -1.2427 5 1 1.3050 -1.4460 -1.6182 6 6 2.4663 0.2199 -2.3205 7 8 2.2771 1.4040 -2.1723 8 8 3.0432 -0.2319 -3.4451 9 6 3.2875 -1.5144 -0.6924 10 6 2.8145 -1.8795 0.7368 11 7 2.0300 -0.7141 1.1839 12 6 1.8038 -0.3645 2.4658 13 8 1.1404 0.6189 2.7181 14 6 2.3752 -1.1956 3.5855 15 6 1.9738 -0.5851 4.9298 16 1 0.8893 -0.4838 4.9735 17 6 2.6113 0.7726 5.0755 18 1 3.5904 0.9569 4.6585 19 6 1.9447 1.7794 5.7410 20 7 0.8085 1.5238 6.3520 21 14 2.6554 3.5066 5.7748 22 1 3.9325 3.5312 5.0175 23 1 1.6928 4.4502 5.1518 24 1 2.9056 3.9114 7.1815 25 6 2.4399 -1.4816 6.0478 26 6 3.7912 -1.7015 6.2397 27 6 4.2189 -2.5207 7.2677 28 6 3.2952 -3.1265 8.0987 29 6 1.9438 -2.9107 7.9037 30 6 1.5161 -2.0885 6.8781 31 1 -0.3633 0.5195 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 -0.3634 -1.0276 0.0065 34 1 3.2894 0.4277 -4.1079 35 1 4.1654 -0.8690 -0.6604 36 1 3.4850 -2.4112 -1.2796 37 1 3.6715 -2.0339 1.3923 38 1 2.1885 -2.7716 0.7129 39 1 1.9880 -2.2122 3.5176 40 1 3.4621 -1.2147 3.5056 41 1 0.3398 2.2320 6.8205 42 1 4.5127 -1.2312 5.5881 43 1 5.2747 -2.6896 7.4199 44 1 3.6293 -3.7687 8.9002 45 1 1.2221 -3.3844 8.5527 46 1 0.4604 -1.9195 6.7258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594145507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:01 Heat of formation + Delta-G solvation = -125.874825 kcal Electronic energy + Delta-G solvation = -28778.829826 eV Core-core repulsion = 24825.081051 eV Total energy + Delta-G solvation = -3953.748776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84525 -40.69647 -39.80841 -38.33617 -37.11368 -35.77680 -33.63268 -32.92765 -32.30998 -31.47932 -30.19248 -27.92846 -27.33352 -24.99381 -23.91529 -23.45323 -23.07249 -21.68479 -20.99849 -19.85217 -18.99578 -18.49203 -18.35744 -17.70163 -17.16439 -16.65110 -16.57351 -16.36736 -16.07663 -15.57951 -15.36299 -15.01397 -14.86766 -14.45948 -14.37297 -14.13489 -13.87725 -13.72628 -13.60021 -13.54335 -13.25456 -13.13347 -12.89136 -12.83743 -12.63057 -12.56963 -12.52091 -12.44518 -12.01736 -11.83286 -11.79297 -11.67488 -11.52483 -11.30559 -10.94115 -10.62036 -10.32774 -9.52390 -9.51629 -9.17204 -8.06218 -6.07524 0.80046 0.86069 1.13977 1.30540 1.36025 1.42117 1.78938 1.97629 2.36084 2.43734 3.18771 3.19767 3.35956 3.47388 3.93636 4.05665 4.18994 4.26879 4.28257 4.33352 4.38073 4.42484 4.46890 4.55441 4.57183 4.60894 4.71136 4.75235 4.80945 4.95121 4.98852 5.01601 5.03926 5.15611 5.21107 5.24261 5.39324 5.51850 5.56562 5.61082 5.66171 5.78430 5.85926 5.97463 6.18072 6.42607 6.48327 6.69733 6.95863 7.00748 7.54158 7.56747 9.03744 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.003705 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.127905 B = 7555.631324 C = 8886.578367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.048 0.952 4 C -0.084 4.084 5 H 0.158 0.842 6 C 0.497 3.503 7 O -0.554 6.554 8 O -0.499 6.499 9 C -0.106 4.106 10 C 0.091 3.909 11 N -0.629 5.629 12 C 0.525 3.475 13 O -0.554 6.554 14 C -0.105 4.105 15 C 0.082 3.918 16 H 0.023 0.977 17 C -0.481 4.481 18 H 0.044 0.956 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.296 1.296 24 H -0.279 1.279 25 C -0.044 4.044 26 C -0.127 4.127 27 C -0.126 4.126 28 C -0.147 4.147 29 C -0.128 4.128 30 C -0.143 4.143 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.429 0.571 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.253 0.747 42 H 0.115 0.885 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.131 0.869 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 -15.006 -15.686 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.066 0.934 4 C -0.104 4.104 5 H 0.175 0.825 6 C 0.340 3.660 7 O -0.445 6.445 8 O -0.312 6.312 9 C -0.143 4.143 10 C -0.030 4.030 11 N -0.366 5.366 12 C 0.315 3.685 13 O -0.430 6.430 14 C -0.145 4.145 15 C 0.063 3.937 16 H 0.041 0.959 17 C -0.519 4.519 18 H 0.063 0.937 19 C -0.173 4.173 20 N -0.556 5.556 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.223 1.223 24 H -0.204 1.204 25 C -0.044 4.044 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.165 4.165 29 C -0.146 4.146 30 C -0.162 4.162 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.291 0.709 35 H 0.092 0.908 36 H 0.157 0.843 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.062 0.938 42 H 0.133 0.867 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.149 0.851 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.303 -14.328 -15.028 21.699 hybrid contribution -0.186 2.511 -0.123 2.521 sum 6.117 -11.817 -15.151 20.165 Atomic orbital electron populations 1.22038 0.94486 1.02892 1.01746 1.21259 0.94940 0.95727 0.84432 0.93390 1.22070 1.02173 0.96257 0.89876 0.82497 1.23174 0.72723 0.87719 0.82383 1.90775 1.53431 1.20539 1.79749 1.84458 1.71979 1.46230 1.28580 1.22844 0.94611 1.02010 0.94870 1.22685 0.96241 0.88461 0.95639 1.48756 1.54141 1.29782 1.03952 1.20854 0.79830 0.85168 0.82697 1.90742 1.40265 1.28646 1.83344 1.21623 1.01728 0.98160 0.92986 1.17628 0.96621 0.91527 0.87917 0.95881 1.20992 1.02088 0.95677 1.33188 0.93744 1.25425 0.95256 1.01198 0.95450 1.70047 1.17238 1.32864 1.35446 0.85946 0.78443 0.82453 0.77417 1.19238 1.22257 1.20442 1.20517 0.93833 0.92471 0.97603 1.21025 0.94986 0.99049 0.99429 1.21367 1.00364 0.97399 0.95201 1.21262 0.92657 1.01864 1.00724 1.21279 0.96947 0.98828 0.97546 1.21093 0.98728 0.98821 0.97519 0.94787 0.90981 0.90286 0.70892 0.90836 0.84298 0.89002 0.88330 0.88877 0.88734 0.93820 0.86715 0.84108 0.83867 0.85084 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.10 71.98 0.66 -3.85 16 2 C 0.14 4.09 2.86 45.34 0.13 4.22 16 3 H 0.05 1.81 6.89 -2.39 -0.02 1.80 16 4 C -0.08 -1.47 2.97 -10.35 -0.03 -1.50 16 5 H 0.16 1.72 7.85 -2.39 -0.02 1.70 16 6 C 0.50 9.74 7.63 71.24 0.54 10.29 16 7 O -0.55 -16.37 16.24 21.98 0.36 -16.01 16 8 O -0.50 -5.74 13.41 -51.43 -0.69 -6.43 16 9 C -0.11 -1.36 6.51 31.99 0.21 -1.15 16 10 C 0.09 1.62 6.69 86.85 0.58 2.20 16 11 N -0.63 -19.28 3.07 -788.06 -2.42 -21.69 16 12 C 0.52 22.03 7.39 87.66 0.65 22.67 16 13 O -0.55 -30.18 14.01 -3.03 -0.04 -30.22 16 14 C -0.11 -4.08 3.96 29.85 0.12 -3.97 16 15 C 0.08 4.10 1.67 -12.29 -0.02 4.08 16 16 H 0.02 1.36 6.98 -2.38 -0.02 1.34 16 17 C -0.48 -27.12 6.37 25.60 0.16 -26.96 16 18 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 19 C 0.03 1.51 5.45 84.65 0.46 1.98 16 20 N -0.92 -57.63 12.87 21.45 0.28 -57.36 16 21 Si 0.93 48.52 29.54 68.60 2.03 50.55 16 22 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 24 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 25 C -0.04 -1.95 4.77 -19.86 -0.09 -2.04 16 26 C -0.13 -4.90 8.86 22.27 0.20 -4.70 16 27 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 28 C -0.15 -4.51 10.05 22.27 0.22 -4.29 16 29 C -0.13 -4.46 10.05 22.27 0.22 -4.24 16 30 C -0.14 -6.14 9.67 22.27 0.22 -5.93 16 31 H 0.03 1.31 6.87 -2.38 -0.02 1.29 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.43 1.75 9.10 -74.06 -0.67 1.07 16 35 H 0.07 1.10 8.04 -2.38 -0.02 1.08 16 36 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 1.51 7.49 -2.39 -0.02 1.50 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.09 3.28 7.48 -2.39 -0.02 3.27 16 41 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.11 4.28 7.76 -2.91 -0.02 4.26 16 43 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 44 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 45 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 46 H 0.09 4.23 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -85.81 381.93 4.27 -81.54 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.32 Total: 16.61 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 4.45 Total: -16.98 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -2.14 Total: -79.05 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -0.37 Total: -52.66 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -85.81 4.27 -81.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594145507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.337 kcal (2) G-P(sol) polarization free energy of solvation -85.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds