Wall clock time and date at job start Tue Mar 31 2020 17:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.99911 * 2 1 4 4 C 1.54323 * 109.88171 * 238.90465 * 2 1 3 5 5 H 1.08999 * 110.72234 * 144.41133 * 4 2 1 6 6 C 1.50700 * 110.72191 * 21.31570 * 4 2 1 7 7 O 1.20820 * 119.99705 * 264.77901 * 6 4 2 8 8 O 1.34225 * 120.00280 * 84.77837 * 6 4 2 9 9 C 1.55161 * 102.94143 * 262.77321 * 4 2 1 10 10 C 1.55124 * 101.48545 * 324.33409 * 9 4 2 11 11 N 1.47020 * 109.88616 * 121.09561 * 2 1 3 12 12 C 1.34785 * 125.64539 * 300.44005 * 11 2 1 13 13 O 1.21285 * 119.99667 * 0.02562 * 12 11 2 14 14 C 1.50703 * 119.99681 * 179.97438 * 12 11 2 15 15 C 1.53005 * 109.46692 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.47068 * 55.00201 * 15 14 12 17 17 C 1.50705 * 109.46927 * 295.00386 * 15 14 12 18 18 H 1.08006 * 119.99884 * 329.02433 * 17 15 14 19 19 C 1.37873 * 120.00014 * 149.03258 * 17 15 14 20 20 N 1.31521 * 119.99816 * 5.87982 * 19 17 15 21 21 Si 1.86793 * 120.00048 * 185.87706 * 19 17 15 22 22 H 1.48498 * 109.47228 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47190 * 119.99963 * 21 19 17 24 24 H 1.48498 * 109.47682 * 239.99982 * 21 19 17 25 25 C 1.50701 * 109.46828 * 175.00228 * 15 14 12 26 26 C 1.38232 * 119.99777 * 62.80979 * 25 15 14 27 27 C 1.38239 * 119.99672 * 179.81113 * 26 25 15 28 28 C 1.38234 * 119.99938 * 0.39385 * 27 26 25 29 29 C 1.38231 * 119.99977 * 359.85448 * 28 27 26 30 30 C 1.38233 * 120.00314 * 359.96138 * 29 28 27 31 31 H 1.08996 * 109.46894 * 295.31553 * 1 2 3 32 32 H 1.09001 * 109.47135 * 55.31663 * 1 2 3 33 33 H 1.08997 * 109.47238 * 175.31618 * 1 2 3 34 34 H 0.96697 * 117.00171 * 180.02562 * 8 6 4 35 35 H 1.08997 * 111.00105 * 82.57378 * 9 4 2 36 36 H 1.09005 * 111.00213 * 206.42477 * 9 4 2 37 37 H 1.09003 * 110.49653 * 278.45526 * 10 9 4 38 38 H 1.08993 * 110.34690 * 156.06146 * 10 9 4 39 39 H 1.08993 * 109.47056 * 300.00002 * 14 12 11 40 40 H 1.09000 * 109.46899 * 60.00306 * 14 12 11 41 41 H 0.96998 * 119.99333 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.00373 * 359.97438 * 26 25 15 43 43 H 1.07997 * 120.00129 * 180.22885 * 27 26 25 44 44 H 1.08005 * 120.00129 * 179.83673 * 28 27 26 45 45 H 1.08005 * 120.00293 * 179.97438 * 29 28 27 46 46 H 1.07998 * 120.00607 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 2.9656 -0.2832 -1.6183 6 6 1.0013 -0.8004 -2.3191 7 8 0.2827 -1.7668 -2.4158 8 8 0.8614 0.2279 -3.1704 9 6 2.3519 -2.1695 -0.6923 10 6 2.8613 -1.8465 0.7368 11 7 2.0301 -0.7140 1.1839 12 6 1.7754 -0.3844 2.4657 13 8 1.0785 0.5757 2.7180 14 6 2.3558 -1.2094 3.5854 15 6 1.9162 -0.6256 4.9297 16 1 0.8287 -0.5579 4.9582 17 6 2.5097 0.7494 5.0984 18 1 3.4659 0.9831 4.6538 19 6 1.8322 1.7088 5.8204 20 7 0.7262 1.3928 6.4582 21 14 2.4850 3.4575 5.8927 22 1 3.7346 3.5527 5.0962 23 1 1.4709 4.3880 5.3349 24 1 2.7682 3.8222 7.3041 25 6 2.3934 -1.5192 6.0455 26 6 3.7476 -1.7105 6.2465 27 6 4.1853 -2.5271 7.2724 28 6 3.2688 -3.1587 8.0921 29 6 1.9146 -2.9713 7.8878 30 6 1.4768 -2.1518 6.8643 31 1 -0.3633 0.4394 0.9289 32 1 -0.3633 0.5848 -0.8451 33 1 -0.3633 -1.0242 -0.0839 34 1 0.1718 0.1497 -3.8437 35 1 1.4452 -2.7736 -0.6604 36 1 3.1271 -2.6618 -1.2796 37 1 3.9123 -1.5588 0.7114 38 1 2.7179 -2.7047 1.3932 39 1 2.0002 -2.2363 3.5020 40 1 3.4438 -1.1951 3.5210 41 1 0.2494 2.0680 6.9658 42 1 4.4636 -1.2201 5.6037 43 1 5.2434 -2.6737 7.4319 44 1 3.6107 -3.7988 8.8921 45 1 1.1984 -3.4651 8.5280 46 1 0.4188 -2.0057 6.7044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594145508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:06 Heat of formation + Delta-G solvation = -102.405510 kcal Electronic energy + Delta-G solvation = -28843.540005 eV Core-core repulsion = 24890.808935 eV Total energy + Delta-G solvation = -3952.731070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.02369 -39.43194 -38.34416 -37.07505 -36.22908 -33.99023 -32.19904 -31.31440 -31.13929 -29.98162 -28.72306 -26.73223 -25.62539 -23.67040 -23.03575 -22.34514 -21.57475 -20.23839 -19.55796 -18.65706 -18.10311 -16.95788 -16.82735 -16.45393 -16.03901 -15.64882 -15.25456 -14.95577 -14.43188 -14.21696 -13.90799 -13.74122 -13.52329 -13.33827 -12.97089 -12.66512 -12.57540 -12.36909 -12.23898 -12.15989 -11.93454 -11.80921 -11.66260 -11.58488 -11.44387 -11.05388 -10.98321 -10.88129 -10.72989 -10.59934 -10.53144 -10.23625 -10.03497 -9.44480 -9.07528 -8.86366 -8.36325 -8.26804 -8.01763 -7.58258 -5.92784 -3.92275 1.94384 2.31556 2.37127 2.70850 3.37593 3.38648 3.44992 3.47263 3.47733 4.14966 4.31460 4.52785 4.75404 4.77766 4.96461 5.08076 5.16970 5.29519 5.39838 5.48338 5.52821 5.58809 5.67754 5.68812 5.71922 5.75115 5.86425 5.96232 6.05797 6.10752 6.19508 6.24241 6.29817 6.39293 6.43690 6.54957 6.65300 6.82796 6.93588 7.06844 7.33598 7.45626 7.54978 7.65712 7.87038 7.97079 7.97827 8.08258 8.38622 8.99791 9.07259 9.69713 11.17301 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.003662 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.485784 B = 7645.063773 C = 9078.355596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.097 4.097 5 H 0.116 0.884 6 C 0.498 3.502 7 O -0.511 6.511 8 O -0.515 6.515 9 C -0.119 4.119 10 C 0.104 3.896 11 N -0.632 5.632 12 C 0.533 3.467 13 O -0.489 6.489 14 C -0.116 4.116 15 C 0.080 3.920 16 H 0.069 0.931 17 C -0.490 4.490 18 H 0.051 0.949 19 C 0.077 3.923 20 N -0.881 5.881 21 Si 0.887 3.113 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.288 1.288 25 C -0.019 4.019 26 C -0.116 4.116 27 C -0.132 4.132 28 C -0.156 4.156 29 C -0.128 4.128 30 C -0.116 4.116 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.409 0.591 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.258 0.742 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -8.237 -14.260 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.051 3.949 3 H 0.102 0.898 4 C -0.117 4.117 5 H 0.135 0.865 6 C 0.340 3.660 7 O -0.398 6.398 8 O -0.327 6.327 9 C -0.157 4.157 10 C -0.020 4.020 11 N -0.372 5.372 12 C 0.322 3.678 13 O -0.359 6.359 14 C -0.156 4.156 15 C 0.061 3.939 16 H 0.087 0.913 17 C -0.528 4.528 18 H 0.069 0.931 19 C -0.126 4.126 20 N -0.518 5.518 21 Si 0.715 3.285 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.214 1.214 25 C -0.020 4.020 26 C -0.134 4.134 27 C -0.150 4.150 28 C -0.174 4.174 29 C -0.147 4.147 30 C -0.135 4.135 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.268 0.732 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.799 -7.802 -13.590 16.124 hybrid contribution -0.045 1.063 -0.332 1.114 sum 3.754 -6.739 -13.922 15.916 Atomic orbital electron populations 1.22323 0.94740 1.02474 1.03833 1.21158 0.94839 0.95970 0.82922 0.89775 1.22167 0.97102 1.00306 0.92131 0.86550 1.22951 0.83203 0.79379 0.80510 1.90718 1.44193 1.33933 1.71005 1.84561 1.58185 1.45757 1.44194 1.22891 1.03265 0.93969 0.95570 1.22287 0.95064 0.90267 0.94374 1.48841 1.52564 1.30855 1.04935 1.20699 0.80672 0.85529 0.80887 1.90754 1.36161 1.27054 1.81932 1.21788 1.00893 0.97467 0.95476 1.17838 0.99432 0.92086 0.84510 0.91271 1.20713 1.04968 0.94304 1.32766 0.93089 1.24811 0.94667 0.98244 0.94882 1.69932 1.16909 1.33538 1.31462 0.86631 0.78882 0.85712 0.77240 1.19975 1.21062 1.21404 1.20692 0.92457 0.91111 0.97718 1.20933 0.96073 0.98213 0.98156 1.20964 0.98296 0.99015 0.96751 1.20788 0.93555 1.02483 1.00561 1.20981 0.95287 0.99925 0.98464 1.21075 0.99654 0.96786 0.95943 0.89527 0.92496 0.92015 0.73183 0.88775 0.89343 0.91211 0.89872 0.91591 0.90429 0.93205 0.86953 0.87708 0.87852 0.87685 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 8.16 37.16 0.30 -2.25 16 2 C 0.16 2.09 3.43 -66.95 -0.23 1.86 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 4 C -0.10 -0.97 3.37 -89.94 -0.30 -1.27 16 5 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 6 C 0.50 5.21 5.43 36.01 0.20 5.41 16 7 O -0.51 -6.65 15.97 -18.75 -0.30 -6.95 16 8 O -0.52 -4.22 13.38 -39.24 -0.52 -4.75 16 9 C -0.12 -1.09 6.36 -24.46 -0.16 -1.25 16 10 C 0.10 1.10 6.70 -2.42 -0.02 1.09 16 11 N -0.63 -9.50 3.08 -162.88 -0.50 -10.00 16 12 C 0.53 10.48 7.38 -10.98 -0.08 10.40 16 13 O -0.49 -11.91 13.82 5.55 0.08 -11.84 16 14 C -0.12 -2.21 3.94 -27.88 -0.11 -2.32 16 15 C 0.08 1.90 1.62 -92.92 -0.15 1.75 16 16 H 0.07 1.89 7.07 -51.93 -0.37 1.52 16 17 C -0.49 -13.03 6.40 -34.44 -0.22 -13.25 16 18 H 0.05 1.36 7.82 -52.48 -0.41 0.95 16 19 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 20 N -0.88 -25.80 12.92 55.43 0.72 -25.09 16 21 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C -0.02 -0.42 4.77 -104.62 -0.50 -0.92 16 26 C -0.12 -2.31 8.86 -39.58 -0.35 -2.66 16 27 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 28 C -0.16 -2.71 10.05 -39.59 -0.40 -3.11 16 29 C -0.13 -2.38 10.05 -39.59 -0.40 -2.78 16 30 C -0.12 -2.47 9.67 -39.58 -0.38 -2.85 16 31 H 0.09 1.54 6.60 -51.93 -0.34 1.19 16 32 H 0.06 0.73 7.30 -51.93 -0.38 0.35 16 33 H 0.06 0.91 7.54 -51.93 -0.39 0.52 16 34 H 0.41 1.65 9.10 45.56 0.41 2.06 16 35 H 0.09 1.01 7.24 -51.93 -0.38 0.63 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 39 H 0.07 1.10 7.85 -51.93 -0.41 0.70 16 40 H 0.08 1.36 7.73 -51.93 -0.40 0.96 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.11 2.15 7.74 -52.49 -0.41 1.75 16 43 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 45 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 46 H 0.11 2.43 7.95 -52.49 -0.42 2.01 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -34.21 378.17 -9.11 -43.32 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.97 Total: 5.23 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.29 Total: -12.85 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.21 Total: -35.09 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.75 Total: -23.54 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.21 -9.11 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594145508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.085 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds