Wall clock time and date at job start Tue Mar 31 2020 17:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.99911 * 2 1 4 4 C 1.54323 * 109.88171 * 238.90465 * 2 1 3 5 5 H 1.08999 * 110.72234 * 144.41133 * 4 2 1 6 6 C 1.50700 * 110.72191 * 21.31570 * 4 2 1 7 7 O 1.20820 * 119.99705 * 264.77901 * 6 4 2 8 8 O 1.34225 * 120.00280 * 84.77837 * 6 4 2 9 9 C 1.55161 * 102.94143 * 262.77321 * 4 2 1 10 10 C 1.55124 * 101.48545 * 324.33409 * 9 4 2 11 11 N 1.47020 * 109.88616 * 121.09561 * 2 1 3 12 12 C 1.34785 * 125.64539 * 300.44005 * 11 2 1 13 13 O 1.21285 * 119.99667 * 0.02562 * 12 11 2 14 14 C 1.50703 * 119.99681 * 179.97438 * 12 11 2 15 15 C 1.53005 * 109.46692 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.47068 * 55.00201 * 15 14 12 17 17 C 1.50705 * 109.46927 * 295.00386 * 15 14 12 18 18 H 1.08006 * 119.99884 * 329.02433 * 17 15 14 19 19 C 1.37873 * 120.00014 * 149.03258 * 17 15 14 20 20 N 1.31521 * 119.99816 * 5.87982 * 19 17 15 21 21 Si 1.86793 * 120.00048 * 185.87706 * 19 17 15 22 22 H 1.48498 * 109.47228 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47190 * 119.99963 * 21 19 17 24 24 H 1.48498 * 109.47682 * 239.99982 * 21 19 17 25 25 C 1.50701 * 109.46828 * 175.00228 * 15 14 12 26 26 C 1.38232 * 119.99777 * 62.80979 * 25 15 14 27 27 C 1.38239 * 119.99672 * 179.81113 * 26 25 15 28 28 C 1.38234 * 119.99938 * 0.39385 * 27 26 25 29 29 C 1.38231 * 119.99977 * 359.85448 * 28 27 26 30 30 C 1.38233 * 120.00314 * 359.96138 * 29 28 27 31 31 H 1.08996 * 109.46894 * 295.31553 * 1 2 3 32 32 H 1.09001 * 109.47135 * 55.31663 * 1 2 3 33 33 H 1.08997 * 109.47238 * 175.31618 * 1 2 3 34 34 H 0.96697 * 117.00171 * 180.02562 * 8 6 4 35 35 H 1.08997 * 111.00105 * 82.57378 * 9 4 2 36 36 H 1.09005 * 111.00213 * 206.42477 * 9 4 2 37 37 H 1.09003 * 110.49653 * 278.45526 * 10 9 4 38 38 H 1.08993 * 110.34690 * 156.06146 * 10 9 4 39 39 H 1.08993 * 109.47056 * 300.00002 * 14 12 11 40 40 H 1.09000 * 109.46899 * 60.00306 * 14 12 11 41 41 H 0.96998 * 119.99333 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.00373 * 359.97438 * 26 25 15 43 43 H 1.07997 * 120.00129 * 180.22885 * 27 26 25 44 44 H 1.08005 * 120.00129 * 179.83673 * 28 27 26 45 45 H 1.08005 * 120.00293 * 179.97438 * 29 28 27 46 46 H 1.07998 * 120.00607 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 2.9656 -0.2832 -1.6183 6 6 1.0013 -0.8004 -2.3191 7 8 0.2827 -1.7668 -2.4158 8 8 0.8614 0.2279 -3.1704 9 6 2.3519 -2.1695 -0.6923 10 6 2.8613 -1.8465 0.7368 11 7 2.0301 -0.7140 1.1839 12 6 1.7754 -0.3844 2.4657 13 8 1.0785 0.5757 2.7180 14 6 2.3558 -1.2094 3.5854 15 6 1.9162 -0.6256 4.9297 16 1 0.8287 -0.5579 4.9582 17 6 2.5097 0.7494 5.0984 18 1 3.4659 0.9831 4.6538 19 6 1.8322 1.7088 5.8204 20 7 0.7262 1.3928 6.4582 21 14 2.4850 3.4575 5.8927 22 1 3.7346 3.5527 5.0962 23 1 1.4709 4.3880 5.3349 24 1 2.7682 3.8222 7.3041 25 6 2.3934 -1.5192 6.0455 26 6 3.7476 -1.7105 6.2465 27 6 4.1853 -2.5271 7.2724 28 6 3.2688 -3.1587 8.0921 29 6 1.9146 -2.9713 7.8878 30 6 1.4768 -2.1518 6.8643 31 1 -0.3633 0.4394 0.9289 32 1 -0.3633 0.5848 -0.8451 33 1 -0.3633 -1.0242 -0.0839 34 1 0.1718 0.1497 -3.8437 35 1 1.4452 -2.7736 -0.6604 36 1 3.1271 -2.6618 -1.2796 37 1 3.9123 -1.5588 0.7114 38 1 2.7179 -2.7047 1.3932 39 1 2.0002 -2.2363 3.5020 40 1 3.4438 -1.1951 3.5210 41 1 0.2494 2.0680 6.9658 42 1 4.4636 -1.2201 5.6037 43 1 5.2434 -2.6737 7.4319 44 1 3.6107 -3.7988 8.8921 45 1 1.1984 -3.4651 8.5280 46 1 0.4188 -2.0057 6.7044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594145508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:05 Heat of formation + Delta-G solvation = -123.728559 kcal Electronic energy + Delta-G solvation = -28844.464641 eV Core-core repulsion = 24890.808935 eV Total energy + Delta-G solvation = -3953.655707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95322 -40.68423 -39.80005 -38.33930 -37.05849 -35.77201 -33.66493 -32.96669 -32.17672 -31.47617 -30.21157 -27.87380 -27.36719 -25.10139 -24.05847 -23.65872 -23.07364 -21.48084 -20.76932 -19.94116 -18.99471 -18.47868 -18.12291 -17.74998 -17.25430 -16.91393 -16.54796 -16.37657 -16.13709 -15.68620 -15.41989 -15.07673 -14.69423 -14.39000 -14.28942 -14.00523 -13.87656 -13.73912 -13.58244 -13.56581 -13.23801 -13.23300 -13.01386 -12.86837 -12.63020 -12.52060 -12.46688 -12.41490 -12.01561 -11.83390 -11.81239 -11.64726 -11.53998 -11.30828 -10.94491 -10.60297 -10.32946 -9.55512 -9.51615 -9.16718 -8.03607 -6.05934 0.80380 0.86568 1.10844 1.35001 1.39059 1.46328 1.86746 1.96326 2.31321 2.46541 3.20729 3.27488 3.37492 3.43382 3.86951 4.07932 4.13617 4.21711 4.27136 4.31421 4.34347 4.37725 4.42454 4.49843 4.56082 4.60203 4.69846 4.72583 4.77695 4.91338 4.94593 4.95410 5.01301 5.14865 5.19850 5.23692 5.39209 5.51045 5.56960 5.60291 5.66381 5.79960 5.86031 5.97615 6.19338 6.42882 6.48638 6.65971 6.97994 7.01632 7.52116 7.57359 9.06179 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.003662 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.485784 B = 7645.063773 C = 9078.355596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.148 3.852 3 H 0.077 0.923 4 C -0.088 4.088 5 H 0.149 0.851 6 C 0.502 3.498 7 O -0.539 6.539 8 O -0.511 6.511 9 C -0.110 4.110 10 C 0.095 3.905 11 N -0.628 5.628 12 C 0.527 3.473 13 O -0.552 6.552 14 C -0.107 4.107 15 C 0.083 3.917 16 H 0.018 0.982 17 C -0.479 4.479 18 H 0.049 0.951 19 C 0.021 3.979 20 N -0.918 5.918 21 Si 0.935 3.065 22 H -0.264 1.264 23 H -0.294 1.294 24 H -0.283 1.283 25 C -0.043 4.043 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.148 4.148 29 C -0.130 4.130 30 C -0.143 4.143 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.428 0.572 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.252 0.748 42 H 0.118 0.882 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.129 0.871 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -10.082 -15.313 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.044 3.956 3 H 0.095 0.905 4 C -0.108 4.108 5 H 0.166 0.834 6 C 0.345 3.655 7 O -0.429 6.429 8 O -0.324 6.324 9 C -0.147 4.147 10 C -0.027 4.027 11 N -0.365 5.365 12 C 0.318 3.682 13 O -0.427 6.427 14 C -0.147 4.147 15 C 0.064 3.936 16 H 0.036 0.964 17 C -0.517 4.517 18 H 0.067 0.933 19 C -0.177 4.177 20 N -0.558 5.558 21 Si 0.763 3.237 22 H -0.188 1.188 23 H -0.221 1.221 24 H -0.209 1.209 25 C -0.043 4.043 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.166 4.166 29 C -0.148 4.148 30 C -0.161 4.161 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.290 0.710 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.136 0.864 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.147 0.853 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.195 -9.675 -14.709 19.019 hybrid contribution -1.091 1.542 -0.088 1.891 sum 6.104 -8.134 -14.797 17.954 Atomic orbital electron populations 1.22198 0.96045 1.01891 1.02316 1.21261 0.93879 0.96314 0.84128 0.90524 1.22169 0.97952 1.00449 0.90206 0.83373 1.22975 0.82692 0.79199 0.80630 1.90720 1.45164 1.35147 1.71902 1.84519 1.58905 1.44635 1.44379 1.22888 1.03655 0.93375 0.94809 1.22676 0.95682 0.88906 0.95396 1.48732 1.52029 1.31781 1.03976 1.20787 0.80059 0.84834 0.82566 1.90732 1.38969 1.29738 1.83309 1.21631 1.01961 0.98060 0.93047 1.17612 0.96203 0.91912 0.87842 0.96403 1.21000 1.04258 0.95812 1.30661 0.93318 1.25491 0.95250 1.01441 0.95558 1.70077 1.18469 1.34019 1.33279 0.85860 0.78378 0.82145 0.77362 1.18805 1.22113 1.20874 1.20517 0.93828 0.92365 0.97607 1.21040 0.94919 0.99080 0.99392 1.21373 1.00384 0.97320 0.95277 1.21253 0.92656 1.01853 1.00828 1.21270 0.96905 0.99009 0.97601 1.21073 0.98650 0.98739 0.97648 0.93560 0.90896 0.92556 0.70997 0.90489 0.85573 0.88525 0.89077 0.89430 0.88297 0.93878 0.86403 0.84025 0.83935 0.85274 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.04 8.16 71.98 0.59 -4.45 16 2 C 0.15 3.93 3.43 45.34 0.16 4.08 16 3 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 4 C -0.09 -1.52 3.37 -10.35 -0.03 -1.56 16 5 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 6 C 0.50 9.46 5.43 71.24 0.39 9.85 16 7 O -0.54 -13.28 15.97 21.98 0.35 -12.93 16 8 O -0.51 -7.13 13.38 -51.37 -0.69 -7.82 16 9 C -0.11 -1.67 6.36 32.06 0.20 -1.47 16 10 C 0.09 1.77 6.70 86.93 0.58 2.35 16 11 N -0.63 -18.61 3.08 -787.62 -2.43 -21.03 16 12 C 0.53 21.45 7.38 87.66 0.65 22.10 16 13 O -0.55 -28.77 13.82 -3.05 -0.04 -28.81 16 14 C -0.11 -4.12 3.94 29.85 0.12 -4.00 16 15 C 0.08 4.12 1.62 -12.28 -0.02 4.10 16 16 H 0.02 1.05 7.07 -2.39 -0.02 1.03 16 17 C -0.48 -26.34 6.40 25.60 0.16 -26.18 16 18 H 0.05 2.63 7.82 -2.91 -0.02 2.60 16 19 C 0.02 1.22 5.45 84.65 0.46 1.69 16 20 N -0.92 -56.98 12.92 21.45 0.28 -56.71 16 21 Si 0.93 47.04 29.54 68.60 2.03 49.07 16 22 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.29 -15.12 7.11 99.48 0.71 -14.42 16 24 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 25 C -0.04 -1.90 4.77 -19.87 -0.09 -2.00 16 26 C -0.13 -4.86 8.86 22.27 0.20 -4.66 16 27 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 28 C -0.15 -4.61 10.05 22.27 0.22 -4.39 16 29 C -0.13 -4.63 10.05 22.27 0.22 -4.40 16 30 C -0.14 -6.22 9.67 22.27 0.22 -6.01 16 31 H 0.05 1.78 6.60 -2.39 -0.02 1.76 16 32 H 0.07 1.90 7.30 -2.39 -0.02 1.88 16 33 H 0.06 1.73 7.54 -2.39 -0.02 1.71 16 34 H 0.43 2.46 9.10 -74.06 -0.67 1.78 16 35 H 0.08 1.50 7.24 -2.39 -0.02 1.48 16 36 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.58 7.48 -2.39 -0.02 1.56 16 39 H 0.09 2.93 7.85 -2.39 -0.02 2.92 16 40 H 0.10 3.34 7.73 -2.39 -0.02 3.32 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.12 4.31 7.74 -2.91 -0.02 4.28 16 43 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 44 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 45 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 46 H 0.09 4.20 7.95 -2.91 -0.02 4.18 16 Total: -1.00 -80.75 378.17 4.06 -76.69 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.32 Total: 20.31 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.24 Total: -18.77 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -2.15 Total: -77.74 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.38 Total: -49.56 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -80.75 4.06 -76.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594145508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.037 kcal (2) G-P(sol) polarization free energy of solvation -80.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds