Wall clock time and date at job start Tue Mar 31 2020 17:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.99773 * 2 1 4 4 C 1.54337 * 109.98614 * 238.96602 * 2 1 3 5 5 H 1.09001 * 110.51656 * 336.97409 * 4 2 1 6 6 C 1.50699 * 111.00078 * 100.12886 * 4 2 1 7 7 O 1.20826 * 119.99927 * 355.23027 * 6 4 2 8 8 O 1.34227 * 119.99832 * 175.22936 * 6 4 2 9 9 C 1.55163 * 103.01918 * 218.66431 * 4 2 1 10 10 C 1.54917 * 101.57757 * 35.30695 * 9 4 2 11 11 N 1.47020 * 109.88261 * 121.10286 * 2 1 3 12 12 C 1.34784 * 125.64597 * 298.39077 * 11 2 1 13 13 O 1.21279 * 119.99632 * 359.71609 * 12 11 2 14 14 C 1.50694 * 120.00050 * 179.97438 * 12 11 2 15 15 C 1.52995 * 109.47199 * 179.72200 * 14 12 11 16 16 H 1.08997 * 109.47387 * 305.00174 * 15 14 12 17 17 C 1.50699 * 109.46853 * 64.99938 * 15 14 12 18 18 H 1.08002 * 120.00442 * 29.59091 * 17 15 14 19 19 C 1.37878 * 120.00157 * 209.58173 * 17 15 14 20 20 N 1.31520 * 119.99619 * 4.94392 * 19 17 15 21 21 Si 1.86803 * 120.00325 * 184.94369 * 19 17 15 22 22 H 1.48497 * 109.47260 * 60.00162 * 21 19 17 23 23 H 1.48499 * 109.47122 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46814 * 300.00138 * 21 19 17 25 25 C 1.50704 * 109.47187 * 184.99723 * 15 14 12 26 26 C 1.38227 * 120.00195 * 296.77096 * 25 15 14 27 27 C 1.38237 * 119.99994 * 179.80952 * 26 25 15 28 28 C 1.38232 * 119.99955 * 0.39442 * 27 26 25 29 29 C 1.38240 * 119.99888 * 359.86222 * 28 27 26 30 30 C 1.38230 * 119.99698 * 359.95166 * 29 28 27 31 31 H 1.09001 * 109.46956 * 300.35745 * 1 2 3 32 32 H 1.08996 * 109.46879 * 60.35310 * 1 2 3 33 33 H 1.08992 * 109.47233 * 180.35674 * 1 2 3 34 34 H 0.96702 * 116.99950 * 179.97438 * 8 6 4 35 35 H 1.08996 * 111.00196 * 277.24034 * 9 4 2 36 36 H 1.08996 * 111.00446 * 153.38052 * 9 4 2 37 37 H 1.09004 * 110.36315 * 204.14981 * 10 9 4 38 38 H 1.09004 * 110.36560 * 81.83287 * 10 9 4 39 39 H 1.08996 * 109.47036 * 299.72548 * 14 12 11 40 40 H 1.08999 * 109.47259 * 59.72290 * 14 12 11 41 41 H 0.97006 * 119.99578 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00181 * 0.02562 * 26 25 15 43 43 H 1.08006 * 119.99590 * 180.23383 * 27 26 25 44 44 H 1.07999 * 119.99783 * 179.83102 * 28 27 26 45 45 H 1.07995 * 119.99317 * 179.97438 * 29 28 27 46 46 H 1.08005 * 119.99302 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3052 -1.4406 -1.6197 6 6 2.4747 0.2209 -2.3193 7 8 2.2904 1.4057 -2.1703 8 8 3.0509 -0.2326 -3.4436 9 6 3.2863 -1.5184 -0.6917 10 6 2.8099 -1.8826 0.7367 11 7 2.0301 -0.7142 1.1838 12 6 1.8074 -0.3622 2.4657 13 8 1.1476 0.6236 2.7180 14 6 2.3833 -1.1903 3.5853 15 6 1.9906 -0.5741 4.9295 16 1 2.3032 0.4698 4.9558 17 6 0.4957 -0.6552 5.1017 18 1 -0.0582 -1.4598 4.6409 19 6 -0.1651 0.2976 5.8477 20 7 0.4935 1.3300 6.3276 21 14 -1.9955 0.1223 6.1768 22 1 -2.2477 -1.1448 6.9089 23 1 -2.4633 1.2693 6.9958 24 1 -2.7307 0.1034 4.8867 25 6 2.6665 -1.3292 6.0449 26 6 2.3717 -2.6634 6.2541 27 6 2.9946 -3.3571 7.2748 28 6 3.9062 -2.7144 8.0914 29 6 4.1970 -1.3787 7.8855 30 6 3.5769 -0.6861 6.8624 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 -0.3633 -1.0276 0.0064 34 1 3.3008 0.4266 -4.1055 35 1 4.1669 -0.8769 -0.6580 36 1 3.4806 -2.4156 -1.2793 37 1 3.6656 -2.0413 1.3931 38 1 2.1801 -2.7719 0.7113 39 1 1.9932 -2.2062 3.5235 40 1 3.4696 -1.2125 3.4993 41 1 0.0286 2.0002 6.8528 42 1 1.6573 -3.1648 5.6180 43 1 2.7670 -4.4005 7.4358 44 1 4.3907 -3.2556 8.8905 45 1 4.9089 -0.8765 8.5237 46 1 3.8045 0.3573 6.7013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594145509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:10 Heat of formation + Delta-G solvation = -102.806604 kcal Electronic energy + Delta-G solvation = -28758.702039 eV Core-core repulsion = 24805.953576 eV Total energy + Delta-G solvation = -3952.748462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89582 -39.42553 -38.36113 -37.02455 -36.29679 -33.97214 -32.08340 -31.38178 -31.18502 -30.00205 -28.70954 -26.77971 -25.54465 -23.51879 -22.79826 -22.29101 -21.59818 -20.59988 -19.55298 -18.65382 -18.01291 -17.31808 -16.60143 -16.34920 -15.86427 -15.57805 -15.37624 -14.61923 -14.33923 -14.17427 -13.92021 -13.81147 -13.72733 -13.48373 -12.83154 -12.81105 -12.54327 -12.39801 -12.20223 -12.01639 -11.93969 -11.76757 -11.67463 -11.55995 -11.43877 -11.11874 -10.86070 -10.83669 -10.67324 -10.62304 -10.54387 -10.25881 -10.02496 -9.41164 -9.09525 -8.80050 -8.31846 -8.20535 -8.04052 -7.61329 -5.89951 -3.89395 1.95419 2.29326 2.34618 2.64755 3.40606 3.44235 3.46437 3.46592 3.53807 4.13246 4.28684 4.53857 4.69652 4.75443 5.01625 5.10002 5.15840 5.37867 5.45885 5.50591 5.55453 5.66298 5.66683 5.68621 5.73676 5.81983 5.85247 5.89381 6.10220 6.16910 6.21736 6.27654 6.30319 6.41791 6.49677 6.54407 6.70979 6.83880 6.92939 7.05586 7.31578 7.45906 7.54736 7.63400 7.90076 7.95562 8.02985 8.10259 8.40701 9.06699 9.09939 9.71515 11.20093 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003645 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.029344 B = 7679.999749 C = 9139.765110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.089 0.911 4 C -0.095 4.095 5 H 0.123 0.877 6 C 0.489 3.511 7 O -0.506 6.506 8 O -0.515 6.515 9 C -0.118 4.118 10 C 0.103 3.897 11 N -0.634 5.634 12 C 0.530 3.470 13 O -0.484 6.484 14 C -0.115 4.115 15 C 0.078 3.922 16 H 0.073 0.927 17 C -0.491 4.491 18 H 0.049 0.951 19 C 0.078 3.922 20 N -0.880 5.880 21 Si 0.884 3.116 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.022 4.022 26 C -0.114 4.114 27 C -0.132 4.132 28 C -0.155 4.155 29 C -0.129 4.129 30 C -0.119 4.119 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.410 0.590 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.259 0.741 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.009 -8.900 -14.466 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.107 0.893 4 C -0.115 4.115 5 H 0.141 0.859 6 C 0.331 3.669 7 O -0.392 6.392 8 O -0.327 6.327 9 C -0.157 4.157 10 C -0.021 4.021 11 N -0.374 5.374 12 C 0.319 3.681 13 O -0.354 6.354 14 C -0.155 4.155 15 C 0.059 3.941 16 H 0.091 0.909 17 C -0.529 4.529 18 H 0.068 0.932 19 C -0.126 4.126 20 N -0.517 5.517 21 Si 0.712 3.288 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.023 4.023 26 C -0.132 4.132 27 C -0.151 4.151 28 C -0.173 4.173 29 C -0.147 4.147 30 C -0.137 4.137 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.269 0.731 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.414 -8.071 -13.731 17.569 hybrid contribution -0.994 0.299 -0.200 1.057 sum 6.421 -7.772 -13.931 17.196 Atomic orbital electron populations 1.22135 0.94234 1.02167 1.03427 1.21246 0.94971 0.96766 0.82499 0.89272 1.22127 1.00535 0.96649 0.92156 0.85930 1.23111 0.73559 0.88542 0.81724 1.90765 1.51379 1.18414 1.78686 1.84520 1.73013 1.45880 1.29318 1.22789 0.96054 1.00688 0.96130 1.22228 0.95974 0.89680 0.94222 1.48868 1.54965 1.28456 1.05103 1.20674 0.80458 0.86050 0.80886 1.90779 1.36634 1.26146 1.81802 1.21756 0.98889 0.99301 0.95528 1.17846 0.95572 0.96169 0.84497 0.90913 1.20617 0.90150 1.10327 1.31782 0.93231 1.24806 0.97455 0.94682 0.95619 1.69896 1.36023 1.10638 1.35148 0.86790 0.86425 0.77385 0.78158 1.20439 1.21418 1.20374 1.20749 0.90830 0.92961 0.97728 1.20946 0.99208 0.94939 0.98129 1.20978 0.98245 0.99007 0.96827 1.20797 1.00816 0.95190 1.00546 1.20986 1.00596 0.94604 0.98484 1.21102 0.97125 0.99519 0.95973 0.89960 0.92362 0.92582 0.73123 0.90122 0.88708 0.89937 0.91270 0.90543 0.91726 0.93101 0.86882 0.87675 0.87820 0.87650 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.11 37.16 0.34 -2.06 16 2 C 0.15 2.15 2.87 -66.94 -0.19 1.96 16 3 H 0.09 1.53 6.89 -51.93 -0.36 1.17 16 4 C -0.10 -0.95 2.97 -89.93 -0.27 -1.22 16 5 H 0.12 0.99 7.84 -51.93 -0.41 0.58 16 6 C 0.49 5.17 7.64 36.01 0.27 5.45 16 7 O -0.51 -7.26 16.24 -18.75 -0.30 -7.56 16 8 O -0.52 -3.75 13.41 -39.25 -0.53 -4.28 16 9 C -0.12 -0.98 6.51 -24.57 -0.16 -1.14 16 10 C 0.10 1.08 6.69 -2.53 -0.02 1.06 16 11 N -0.63 -9.78 3.06 -163.01 -0.50 -10.28 16 12 C 0.53 10.70 7.39 -10.98 -0.08 10.62 16 13 O -0.48 -12.22 14.03 5.56 0.08 -12.14 16 14 C -0.11 -2.20 3.95 -27.89 -0.11 -2.31 16 15 C 0.08 1.86 1.68 -92.92 -0.16 1.70 16 16 H 0.07 2.01 6.95 -51.93 -0.36 1.65 16 17 C -0.49 -13.14 6.38 -34.44 -0.22 -13.36 16 18 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 19 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 20 N -0.88 -26.02 12.85 55.43 0.71 -25.31 16 21 Si 0.88 22.23 29.54 -169.99 -5.02 17.21 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.02 -0.48 4.77 -104.63 -0.50 -0.98 16 26 C -0.11 -2.28 8.86 -39.59 -0.35 -2.63 16 27 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 28 C -0.16 -2.68 10.05 -39.58 -0.40 -3.08 16 29 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 30 C -0.12 -2.51 9.67 -39.59 -0.38 -2.89 16 31 H 0.08 1.54 6.89 -51.93 -0.36 1.18 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.41 1.36 9.10 45.56 0.41 1.77 16 35 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.80 7.47 -51.93 -0.39 0.41 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.35 7.76 -51.93 -0.40 0.94 16 40 H 0.06 1.09 7.84 -51.93 -0.41 0.68 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.11 2.17 7.75 -52.49 -0.41 1.76 16 43 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 44 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.11 2.44 7.95 -52.48 -0.42 2.02 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -34.97 381.89 -8.93 -43.91 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.01 Total: 4.99 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -3.11 Total: -12.30 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.21 Total: -35.59 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.75 Total: -23.98 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.97 -8.93 -43.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594145509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.901 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds