Wall clock time and date at job start Tue Mar 31 2020 17:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.99773 * 2 1 4 4 C 1.54337 * 109.98614 * 238.96602 * 2 1 3 5 5 H 1.09001 * 110.51656 * 336.97409 * 4 2 1 6 6 C 1.50699 * 111.00078 * 100.12886 * 4 2 1 7 7 O 1.20826 * 119.99927 * 355.23027 * 6 4 2 8 8 O 1.34227 * 119.99832 * 175.22936 * 6 4 2 9 9 C 1.55163 * 103.01918 * 218.66431 * 4 2 1 10 10 C 1.54917 * 101.57757 * 35.30695 * 9 4 2 11 11 N 1.47020 * 109.88261 * 121.10286 * 2 1 3 12 12 C 1.34784 * 125.64597 * 298.39077 * 11 2 1 13 13 O 1.21279 * 119.99632 * 359.71609 * 12 11 2 14 14 C 1.50694 * 120.00050 * 179.97438 * 12 11 2 15 15 C 1.52995 * 109.47199 * 179.72200 * 14 12 11 16 16 H 1.08997 * 109.47387 * 305.00174 * 15 14 12 17 17 C 1.50699 * 109.46853 * 64.99938 * 15 14 12 18 18 H 1.08002 * 120.00442 * 29.59091 * 17 15 14 19 19 C 1.37878 * 120.00157 * 209.58173 * 17 15 14 20 20 N 1.31520 * 119.99619 * 4.94392 * 19 17 15 21 21 Si 1.86803 * 120.00325 * 184.94369 * 19 17 15 22 22 H 1.48497 * 109.47260 * 60.00162 * 21 19 17 23 23 H 1.48499 * 109.47122 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46814 * 300.00138 * 21 19 17 25 25 C 1.50704 * 109.47187 * 184.99723 * 15 14 12 26 26 C 1.38227 * 120.00195 * 296.77096 * 25 15 14 27 27 C 1.38237 * 119.99994 * 179.80952 * 26 25 15 28 28 C 1.38232 * 119.99955 * 0.39442 * 27 26 25 29 29 C 1.38240 * 119.99888 * 359.86222 * 28 27 26 30 30 C 1.38230 * 119.99698 * 359.95166 * 29 28 27 31 31 H 1.09001 * 109.46956 * 300.35745 * 1 2 3 32 32 H 1.08996 * 109.46879 * 60.35310 * 1 2 3 33 33 H 1.08992 * 109.47233 * 180.35674 * 1 2 3 34 34 H 0.96702 * 116.99950 * 179.97438 * 8 6 4 35 35 H 1.08996 * 111.00196 * 277.24034 * 9 4 2 36 36 H 1.08996 * 111.00446 * 153.38052 * 9 4 2 37 37 H 1.09004 * 110.36315 * 204.14981 * 10 9 4 38 38 H 1.09004 * 110.36560 * 81.83287 * 10 9 4 39 39 H 1.08996 * 109.47036 * 299.72548 * 14 12 11 40 40 H 1.08999 * 109.47259 * 59.72290 * 14 12 11 41 41 H 0.97006 * 119.99578 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00181 * 0.02562 * 26 25 15 43 43 H 1.08006 * 119.99590 * 180.23383 * 27 26 25 44 44 H 1.07999 * 119.99783 * 179.83102 * 28 27 26 45 45 H 1.07995 * 119.99317 * 179.97438 * 29 28 27 46 46 H 1.08005 * 119.99302 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3052 -1.4406 -1.6197 6 6 2.4747 0.2209 -2.3193 7 8 2.2904 1.4057 -2.1703 8 8 3.0509 -0.2326 -3.4436 9 6 3.2863 -1.5184 -0.6917 10 6 2.8099 -1.8826 0.7367 11 7 2.0301 -0.7142 1.1838 12 6 1.8074 -0.3622 2.4657 13 8 1.1476 0.6236 2.7180 14 6 2.3833 -1.1903 3.5853 15 6 1.9906 -0.5741 4.9295 16 1 2.3032 0.4698 4.9558 17 6 0.4957 -0.6552 5.1017 18 1 -0.0582 -1.4598 4.6409 19 6 -0.1651 0.2976 5.8477 20 7 0.4935 1.3300 6.3276 21 14 -1.9955 0.1223 6.1768 22 1 -2.2477 -1.1448 6.9089 23 1 -2.4633 1.2693 6.9958 24 1 -2.7307 0.1034 4.8867 25 6 2.6665 -1.3292 6.0449 26 6 2.3717 -2.6634 6.2541 27 6 2.9946 -3.3571 7.2748 28 6 3.9062 -2.7144 8.0914 29 6 4.1970 -1.3787 7.8855 30 6 3.5769 -0.6861 6.8624 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 -0.3633 -1.0276 0.0064 34 1 3.3008 0.4266 -4.1055 35 1 4.1669 -0.8769 -0.6580 36 1 3.4806 -2.4156 -1.2793 37 1 3.6656 -2.0413 1.3931 38 1 2.1801 -2.7719 0.7113 39 1 1.9932 -2.2062 3.5235 40 1 3.4696 -1.2125 3.4993 41 1 0.0286 2.0002 6.8528 42 1 1.6573 -3.1648 5.6180 43 1 2.7670 -4.4005 7.4358 44 1 4.3907 -3.2556 8.8905 45 1 4.9089 -0.8765 8.5237 46 1 3.8045 0.3573 6.7013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594145509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:09 Heat of formation + Delta-G solvation = -125.455275 kcal Electronic energy + Delta-G solvation = -28759.684159 eV Core-core repulsion = 24805.953576 eV Total energy + Delta-G solvation = -3953.730583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84038 -40.69553 -39.81597 -38.33489 -37.10796 -35.76928 -33.62165 -32.92106 -32.30986 -31.48752 -30.20073 -27.92985 -27.31845 -24.99920 -23.90588 -23.45248 -23.07477 -21.68866 -21.00015 -19.83833 -19.00015 -18.52697 -18.26279 -17.75683 -17.14795 -16.67465 -16.56142 -16.39790 -15.84359 -15.71709 -15.43003 -14.95641 -14.86570 -14.43426 -14.41053 -14.07791 -13.84353 -13.78864 -13.60954 -13.54333 -13.22116 -13.15255 -12.85676 -12.80695 -12.61027 -12.54832 -12.51817 -12.47794 -12.02012 -11.84339 -11.81198 -11.66256 -11.52005 -11.26731 -10.97882 -10.55101 -10.35034 -9.53167 -9.51728 -9.18542 -8.02443 -6.05014 0.79135 0.85038 1.14262 1.35743 1.39107 1.43281 1.78444 1.98807 2.35619 2.46486 3.18944 3.19666 3.36975 3.47142 3.93698 4.05315 4.18956 4.26729 4.28379 4.32975 4.37417 4.41989 4.47264 4.55158 4.56209 4.61194 4.70828 4.73018 4.82927 4.94012 4.98564 5.01589 5.03390 5.15230 5.20941 5.24521 5.38897 5.51375 5.56096 5.61173 5.69429 5.79136 5.85084 5.97525 6.19172 6.42905 6.47579 6.69790 6.96393 7.02528 7.55036 7.58041 9.07105 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003645 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.029344 B = 7679.999749 C = 9139.765110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.051 0.949 4 C -0.086 4.086 5 H 0.155 0.845 6 C 0.498 3.502 7 O -0.554 6.554 8 O -0.499 6.499 9 C -0.104 4.104 10 C 0.091 3.909 11 N -0.629 5.629 12 C 0.524 3.476 13 O -0.553 6.553 14 C -0.104 4.104 15 C 0.081 3.919 16 H 0.020 0.980 17 C -0.481 4.481 18 H 0.047 0.953 19 C 0.020 3.980 20 N -0.919 5.919 21 Si 0.934 3.066 22 H -0.263 1.263 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.045 4.045 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.147 4.147 29 C -0.129 4.129 30 C -0.145 4.145 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.429 0.571 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.252 0.748 42 H 0.118 0.882 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.130 0.870 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.357 -13.540 -15.557 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.069 0.931 4 C -0.105 4.105 5 H 0.172 0.828 6 C 0.341 3.659 7 O -0.444 6.444 8 O -0.312 6.312 9 C -0.142 4.142 10 C -0.031 4.031 11 N -0.366 5.366 12 C 0.314 3.686 13 O -0.429 6.429 14 C -0.144 4.144 15 C 0.061 3.939 16 H 0.038 0.962 17 C -0.519 4.519 18 H 0.066 0.934 19 C -0.178 4.178 20 N -0.559 5.559 21 Si 0.761 3.239 22 H -0.188 1.188 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.046 4.046 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.165 4.165 29 C -0.147 4.147 30 C -0.163 4.163 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.291 0.709 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.061 0.939 42 H 0.136 0.864 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.148 0.852 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.804 -12.790 -14.894 21.516 hybrid contribution -1.282 1.675 0.036 2.110 sum 7.522 -11.115 -14.858 20.022 Atomic orbital electron populations 1.22041 0.94791 1.02753 1.01687 1.21243 0.94671 0.95828 0.84436 0.93099 1.22059 1.02152 0.96288 0.89984 0.82770 1.23126 0.72739 0.87679 0.82341 1.90773 1.53512 1.20438 1.79709 1.84460 1.71929 1.46209 1.28634 1.22840 0.94644 1.01966 0.94758 1.22683 0.96267 0.88360 0.95746 1.48759 1.54283 1.29657 1.03950 1.20862 0.79792 0.85291 0.82703 1.90755 1.39866 1.28954 1.83303 1.21604 1.00355 0.99543 0.92931 1.17619 0.94154 0.94160 0.87926 0.96211 1.20927 0.92016 1.09192 1.29734 0.93444 1.25510 1.00919 0.94929 0.96477 1.70063 1.37097 1.11690 1.37029 0.85997 0.82516 0.77702 0.77726 1.18825 1.21712 1.20791 1.20531 0.92292 0.94192 0.97563 1.21043 0.99808 0.94022 0.99384 1.21385 0.97009 1.00610 0.95302 1.21267 0.99873 0.94536 1.00778 1.21272 1.00393 0.95475 0.97564 1.21095 0.98683 0.98886 0.97686 0.94899 0.90932 0.90616 0.70856 0.90556 0.84369 0.88816 0.88654 0.88296 0.89300 0.93916 0.86388 0.83957 0.83842 0.85192 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 9.11 71.98 0.66 -4.09 16 2 C 0.14 4.17 2.87 45.35 0.13 4.30 16 3 H 0.05 1.89 6.89 -2.39 -0.02 1.87 16 4 C -0.09 -1.49 2.97 -10.34 -0.03 -1.52 16 5 H 0.15 1.79 7.84 -2.39 -0.02 1.77 16 6 C 0.50 9.61 7.64 71.24 0.54 10.16 16 7 O -0.55 -16.05 16.24 21.96 0.36 -15.70 16 8 O -0.50 -5.59 13.41 -51.39 -0.69 -6.27 16 9 C -0.10 -1.32 6.51 31.99 0.21 -1.11 16 10 C 0.09 1.62 6.69 86.86 0.58 2.20 16 11 N -0.63 -19.38 3.06 -788.03 -2.41 -21.80 16 12 C 0.52 22.12 7.39 87.65 0.65 22.77 16 13 O -0.55 -30.39 14.03 -3.03 -0.04 -30.44 16 14 C -0.10 -4.08 3.95 29.84 0.12 -3.96 16 15 C 0.08 4.03 1.68 -12.29 -0.02 4.00 16 16 H 0.02 1.18 6.95 -2.39 -0.02 1.16 16 17 C -0.48 -26.77 6.38 25.60 0.16 -26.61 16 18 H 0.05 2.59 7.82 -2.91 -0.02 2.56 16 19 C 0.02 1.18 5.45 84.65 0.46 1.65 16 20 N -0.92 -58.02 12.85 21.45 0.28 -57.75 16 21 Si 0.93 47.31 29.54 68.60 2.03 49.33 16 22 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 24 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 25 C -0.05 -2.02 4.77 -19.87 -0.09 -2.11 16 26 C -0.12 -4.76 8.86 22.27 0.20 -4.56 16 27 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 28 C -0.15 -4.49 10.05 22.27 0.22 -4.27 16 29 C -0.13 -4.53 10.05 22.27 0.22 -4.31 16 30 C -0.15 -6.29 9.67 22.27 0.22 -6.08 16 31 H 0.03 1.32 6.89 -2.39 -0.02 1.31 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.43 1.58 9.10 -74.06 -0.67 0.90 16 35 H 0.08 1.07 8.04 -2.39 -0.02 1.06 16 36 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 1.51 7.47 -2.38 -0.02 1.49 16 38 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.10 3.37 7.76 -2.39 -0.02 3.35 16 40 H 0.09 2.98 7.84 -2.39 -0.02 2.96 16 41 H 0.25 15.46 8.31 -92.70 -0.77 14.69 16 42 H 0.12 4.30 7.75 -2.91 -0.02 4.28 16 43 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 44 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 45 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 46 H 0.09 4.20 7.95 -2.91 -0.02 4.18 16 Total: -1.00 -85.71 381.89 4.28 -81.43 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.32 Total: 18.47 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 4.45 Total: -17.29 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.14 Total: -79.55 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.37 Total: -52.41 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -85.71 4.28 -81.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594145509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.025 kcal (2) G-P(sol) polarization free energy of solvation -85.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds