Wall clock time and date at job start Tue Mar 31 2020 17:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.59180 * 2 1 4 4 C 1.53201 * 109.58624 * 239.56641 * 2 1 3 5 5 C 1.53039 * 109.31198 * 294.85191 * 4 2 1 6 6 H 1.08999 * 109.46013 * 58.65531 * 5 4 2 7 7 C 1.50705 * 109.45406 * 178.61483 * 5 4 2 8 8 O 1.20820 * 119.99666 * 120.07146 * 7 5 4 9 9 O 1.34225 * 119.99881 * 300.06140 * 7 5 4 10 10 C 1.53034 * 109.53800 * 298.63043 * 5 4 2 11 11 C 1.53191 * 109.31410 * 61.36819 * 10 5 4 12 12 H 1.09002 * 109.59083 * 185.43091 * 11 10 5 13 13 C 1.53003 * 109.58480 * 65.15063 * 11 10 5 14 14 N 1.46927 * 108.77801 * 305.36534 * 11 10 5 15 15 C 1.34777 * 120.63152 * 233.58616 * 14 11 10 16 16 O 1.21580 * 119.99832 * 4.92975 * 15 14 11 17 17 C 1.47642 * 119.99746 * 184.92567 * 15 14 11 18 18 C 1.40013 * 119.89596 * 39.28849 * 17 15 14 19 19 C 1.36314 * 120.10792 * 179.71533 * 18 17 15 20 20 C 1.40890 * 119.88984 * 0.52882 * 19 18 17 21 21 C 1.41115 * 120.10270 * 179.72440 * 20 19 18 22 22 H 1.07996 * 119.99772 * 208.03803 * 21 20 19 23 23 C 1.40224 * 119.99823 * 28.03065 * 21 20 19 24 24 N 1.30642 * 120.00396 * 11.47980 * 23 21 20 25 25 Si 1.86803 * 119.99531 * 191.47731 * 23 21 20 26 26 H 1.48505 * 109.47034 * 90.00170 * 25 23 21 27 27 H 1.48505 * 109.47094 * 210.00092 * 25 23 21 28 28 H 1.48499 * 109.47405 * 330.00201 * 25 23 21 29 29 C 1.40883 * 119.79490 * 359.74191 * 20 19 18 30 30 C 1.36319 * 119.88885 * 0.02562 * 29 20 19 31 31 H 1.09004 * 109.46798 * 282.67780 * 1 2 3 32 32 H 1.09004 * 109.47005 * 42.67414 * 1 2 3 33 33 H 1.08996 * 109.47224 * 162.67741 * 1 2 3 34 34 H 1.09005 * 109.49367 * 174.89682 * 4 2 1 35 35 H 1.09001 * 109.48920 * 54.80445 * 4 2 1 36 36 H 0.96698 * 117.00429 * 180.02562 * 9 7 5 37 37 H 1.09001 * 109.49760 * 181.31900 * 10 5 4 38 38 H 1.09004 * 109.49980 * 301.41797 * 10 5 4 39 39 H 1.08995 * 109.47116 * 77.49956 * 13 11 10 40 40 H 1.09000 * 109.46931 * 197.49673 * 13 11 10 41 41 H 1.08999 * 109.47090 * 317.49509 * 13 11 10 42 42 H 1.08008 * 119.94607 * 359.97438 * 18 17 15 43 43 H 1.08004 * 120.05545 * 180.25130 * 19 18 17 44 44 H 0.96998 * 119.99704 * 179.97438 * 24 23 21 45 45 H 1.08001 * 120.05853 * 179.97438 * 29 20 19 46 46 H 1.07999 * 119.94326 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7311 -1.2445 5 6 1.6413 -2.2057 -1.1672 6 1 0.5564 -2.2829 -1.0963 7 6 2.1155 -2.9209 -2.4061 8 8 2.8848 -3.8476 -2.3115 9 8 1.6829 -2.5283 -3.6146 10 6 2.2799 -2.8464 0.0671 11 6 1.7691 -2.1393 1.3265 12 1 2.2925 -2.5265 2.2007 13 6 0.2664 -2.3842 1.4783 14 7 2.0225 -0.6980 1.1954 15 6 2.6936 -0.0289 2.1537 16 8 3.1734 -0.6321 3.0939 17 6 2.8463 1.4368 2.0615 18 6 1.7804 2.2221 1.6060 19 6 1.9146 3.5762 1.5246 20 6 3.1321 4.1842 1.8893 21 6 3.2780 5.5850 1.8013 22 1 4.2531 6.0168 1.6312 23 6 2.1566 6.4164 1.9347 24 7 1.0242 5.9227 2.3598 25 14 2.2821 8.2299 1.5044 26 1 1.9454 8.4230 0.0710 27 1 1.3338 9.0047 2.3445 28 1 3.6669 8.7036 1.7558 29 6 4.2037 3.3893 2.3417 30 6 4.0584 2.0364 2.4241 31 1 -0.3633 0.2256 1.0027 32 1 -0.3633 0.7556 -0.6966 33 1 -0.3633 -0.9810 -0.3060 34 1 3.1297 -0.6521 -1.2905 35 1 1.6075 -0.2812 -2.1364 36 1 2.0144 -3.0177 -4.3799 37 1 2.0121 -3.9021 0.1087 38 1 3.3639 -2.7475 0.0088 39 1 0.0995 -3.3884 1.8677 40 1 -0.1529 -1.6525 2.1689 41 1 -0.2177 -2.2859 0.5067 42 1 0.8489 1.7547 1.3225 43 1 1.0905 4.1816 1.1770 44 1 0.2487 6.4979 2.4523 45 1 5.1390 3.8509 2.6219 46 1 4.8794 1.4261 2.7704 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594206189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:13 Heat of formation + Delta-G solvation = -106.557305 kcal Electronic energy + Delta-G solvation = -29285.035508 eV Core-core repulsion = 25332.124403 eV Total energy + Delta-G solvation = -3952.911105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07615 -39.87985 -37.82521 -36.89242 -36.31885 -34.01250 -33.13088 -32.80119 -30.18411 -29.73368 -29.42593 -26.14132 -26.11180 -25.34221 -22.56503 -21.91150 -21.44477 -20.93460 -20.02484 -18.30280 -18.03629 -17.53408 -17.28245 -16.58622 -15.74798 -15.55275 -15.26904 -14.68948 -14.63880 -14.16845 -14.01562 -13.83346 -13.60594 -13.30243 -13.02638 -12.95751 -12.71947 -12.64501 -12.47807 -12.03753 -11.93640 -11.79518 -11.71314 -11.53495 -11.37884 -11.27544 -11.11634 -11.02407 -10.90392 -10.67646 -10.63906 -10.46560 -10.22738 -10.03212 -9.51937 -9.42703 -8.93174 -8.33237 -7.67764 -7.49629 -6.95441 -4.59950 2.00857 2.28595 2.82151 2.94224 2.96282 2.98139 2.99845 3.38829 3.70643 3.77564 4.38347 4.48164 4.55118 4.77989 4.93425 5.06133 5.08300 5.18626 5.29863 5.39765 5.47700 5.55321 5.63808 5.64572 5.73420 5.81660 5.85127 5.94174 5.97556 6.08327 6.15368 6.20013 6.24595 6.26976 6.34726 6.37987 6.77990 6.85382 6.94407 7.05955 7.13956 7.44456 7.59626 7.69324 7.80371 7.86004 8.03058 8.08988 8.42071 8.65973 8.75248 8.93781 9.96224 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016860 B = 0.003181 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.337154 B = 8800.862531 C = 9392.297597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.127 3.873 3 H 0.125 0.875 4 C -0.120 4.120 5 C -0.082 4.082 6 H 0.115 0.885 7 C 0.483 3.517 8 O -0.516 6.516 9 O -0.515 6.515 10 C -0.111 4.111 11 C 0.139 3.861 12 H 0.103 0.897 13 C -0.171 4.171 14 N -0.610 5.610 15 C 0.580 3.420 16 O -0.565 6.565 17 C -0.274 4.274 18 C -0.075 4.075 19 C -0.171 4.171 20 C 0.127 3.873 21 C -0.448 4.448 22 H 0.082 0.918 23 C 0.073 3.927 24 N -0.782 5.782 25 Si 0.915 3.085 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.260 1.260 29 C -0.232 4.232 30 C -0.032 4.032 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.285 0.715 45 H 0.097 0.903 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 -10.471 -9.799 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.023 3.977 3 H 0.143 0.857 4 C -0.158 4.158 5 C -0.101 4.101 6 H 0.132 0.868 7 C 0.326 3.674 8 O -0.404 6.404 9 O -0.327 6.327 10 C -0.149 4.149 11 C 0.035 3.965 12 H 0.121 0.879 13 C -0.228 4.228 14 N -0.344 5.344 15 C 0.374 3.626 16 O -0.445 6.445 17 C -0.278 4.278 18 C -0.094 4.094 19 C -0.190 4.190 20 C 0.124 3.876 21 C -0.477 4.477 22 H 0.100 0.900 23 C -0.146 4.146 24 N -0.406 5.406 25 Si 0.739 3.261 26 H -0.191 1.191 27 H -0.201 1.201 28 H -0.184 1.184 29 C -0.251 4.251 30 C -0.051 4.051 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.266 0.734 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.141 0.859 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.769 -10.745 -8.844 14.711 hybrid contribution 0.108 0.446 -0.687 0.827 sum -4.661 -10.299 -9.531 14.786 Atomic orbital electron populations 1.22614 0.95404 1.02196 1.02999 1.21602 0.94083 0.98736 0.83230 0.85747 1.21976 1.02473 0.91793 0.99554 1.21203 1.03121 0.96520 0.89239 0.86782 1.23651 0.77524 0.81382 0.84884 1.90714 1.33479 1.28930 1.87290 1.84556 1.69243 1.61664 1.17221 1.21836 1.01536 0.99548 0.91969 1.21012 0.95894 0.81437 0.98153 0.87882 1.22560 0.95915 1.01946 1.02418 1.48194 1.57484 1.07661 1.21015 1.18762 0.75349 0.88028 0.80418 1.90646 1.49698 1.70589 1.33595 1.18866 0.98005 0.90021 1.20949 1.20730 0.96195 0.94502 0.97992 1.21067 0.99714 0.92660 1.05549 1.17783 0.91013 0.93137 0.85707 1.19798 0.94982 0.91287 1.41609 0.89964 1.26041 0.94529 1.01878 0.92193 1.69711 1.01843 1.38415 1.30657 0.86197 0.79597 0.80915 0.79438 1.19059 1.20081 1.18419 1.20730 1.00349 0.93070 1.10985 1.20272 0.94941 0.94457 0.95460 0.91427 0.91473 0.91761 0.90746 0.89388 0.73407 0.90166 0.90494 0.92106 0.91659 0.91625 0.88126 0.85892 0.90420 0.88447 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 7.00 37.16 0.26 -1.70 16 2 C 0.13 1.71 2.32 -67.59 -0.16 1.55 16 3 H 0.13 1.97 4.59 -51.93 -0.24 1.73 16 4 C -0.12 -1.36 4.77 -26.61 -0.13 -1.49 16 5 C -0.08 -0.86 2.28 -91.73 -0.21 -1.06 16 6 H 0.11 1.01 4.95 -51.93 -0.26 0.75 16 7 C 0.48 5.25 7.63 36.01 0.27 5.53 16 8 O -0.52 -7.15 16.74 -18.75 -0.31 -7.46 16 9 O -0.52 -4.25 13.30 -39.24 -0.52 -4.77 16 10 C -0.11 -1.31 4.13 -26.62 -0.11 -1.42 16 11 C 0.14 1.87 3.21 -67.60 -0.22 1.65 16 12 H 0.10 1.59 7.00 -51.93 -0.36 1.23 16 13 C -0.17 -1.86 7.99 37.16 0.30 -1.56 16 14 N -0.61 -9.66 2.50 -158.89 -0.40 -10.06 16 15 C 0.58 11.90 7.32 -12.42 -0.09 11.81 16 16 O -0.57 -13.24 16.33 5.30 0.09 -13.15 16 17 C -0.27 -6.01 5.20 -104.73 -0.54 -6.56 16 18 C -0.08 -1.60 7.27 -39.61 -0.29 -1.89 16 19 C -0.17 -4.03 8.60 -39.27 -0.34 -4.37 16 20 C 0.13 3.14 5.56 -106.80 -0.59 2.55 16 21 C -0.45 -11.01 9.06 -37.75 -0.34 -11.35 16 22 H 0.08 1.94 7.88 -52.49 -0.41 1.52 16 23 C 0.07 1.70 5.24 -17.31 -0.09 1.61 16 24 N -0.78 -18.65 10.81 55.56 0.60 -18.05 16 25 Si 0.91 17.25 29.58 -169.99 -5.03 12.22 16 26 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 27 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 28 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 29 C -0.23 -5.47 9.73 -39.27 -0.38 -5.86 16 30 C -0.03 -0.73 9.56 -39.61 -0.38 -1.11 16 31 H 0.07 0.85 6.82 -51.93 -0.35 0.50 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.60 3.85 -51.93 -0.20 0.40 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.41 1.69 9.10 45.56 0.41 2.11 16 37 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.80 7.62 -51.93 -0.40 0.41 16 41 H 0.07 0.60 3.85 -51.93 -0.20 0.40 16 42 H 0.10 1.86 4.77 -52.48 -0.25 1.61 16 43 H 0.12 2.97 6.17 -52.48 -0.32 2.64 16 44 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 45 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 46 H 0.09 2.07 8.05 -52.49 -0.42 1.65 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -30.04 357.16 -8.32 -38.35 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.09 Total: 11.19 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -3.04 Total: -13.66 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: 0.20 Total: -28.11 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.75 Total: -25.38 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.04 -8.32 -38.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594206189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.202 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds