Wall clock time and date at job start Tue Mar 31 2020 17:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.59180 * 2 1 4 4 C 1.53201 * 109.58624 * 239.56641 * 2 1 3 5 5 C 1.53039 * 109.31198 * 294.85191 * 4 2 1 6 6 H 1.08999 * 109.46013 * 58.65531 * 5 4 2 7 7 C 1.50705 * 109.45406 * 178.61483 * 5 4 2 8 8 O 1.20820 * 119.99666 * 120.07146 * 7 5 4 9 9 O 1.34225 * 119.99881 * 300.06140 * 7 5 4 10 10 C 1.53034 * 109.53800 * 298.63043 * 5 4 2 11 11 C 1.53191 * 109.31410 * 61.36819 * 10 5 4 12 12 H 1.09002 * 109.59083 * 185.43091 * 11 10 5 13 13 C 1.53003 * 109.58480 * 65.15063 * 11 10 5 14 14 N 1.46927 * 108.77801 * 305.36534 * 11 10 5 15 15 C 1.34777 * 120.63152 * 233.58616 * 14 11 10 16 16 O 1.21580 * 119.99832 * 4.92975 * 15 14 11 17 17 C 1.47642 * 119.99746 * 184.92567 * 15 14 11 18 18 C 1.40013 * 119.89596 * 39.28849 * 17 15 14 19 19 C 1.36314 * 120.10792 * 179.71533 * 18 17 15 20 20 C 1.40890 * 119.88984 * 0.52882 * 19 18 17 21 21 C 1.41115 * 120.10270 * 179.72440 * 20 19 18 22 22 H 1.07996 * 119.99772 * 208.03803 * 21 20 19 23 23 C 1.40224 * 119.99823 * 28.03065 * 21 20 19 24 24 N 1.30642 * 120.00396 * 11.47980 * 23 21 20 25 25 Si 1.86803 * 119.99531 * 191.47731 * 23 21 20 26 26 H 1.48505 * 109.47034 * 90.00170 * 25 23 21 27 27 H 1.48505 * 109.47094 * 210.00092 * 25 23 21 28 28 H 1.48499 * 109.47405 * 330.00201 * 25 23 21 29 29 C 1.40883 * 119.79490 * 359.74191 * 20 19 18 30 30 C 1.36319 * 119.88885 * 0.02562 * 29 20 19 31 31 H 1.09004 * 109.46798 * 282.67780 * 1 2 3 32 32 H 1.09004 * 109.47005 * 42.67414 * 1 2 3 33 33 H 1.08996 * 109.47224 * 162.67741 * 1 2 3 34 34 H 1.09005 * 109.49367 * 174.89682 * 4 2 1 35 35 H 1.09001 * 109.48920 * 54.80445 * 4 2 1 36 36 H 0.96698 * 117.00429 * 180.02562 * 9 7 5 37 37 H 1.09001 * 109.49760 * 181.31900 * 10 5 4 38 38 H 1.09004 * 109.49980 * 301.41797 * 10 5 4 39 39 H 1.08995 * 109.47116 * 77.49956 * 13 11 10 40 40 H 1.09000 * 109.46931 * 197.49673 * 13 11 10 41 41 H 1.08999 * 109.47090 * 317.49509 * 13 11 10 42 42 H 1.08008 * 119.94607 * 359.97438 * 18 17 15 43 43 H 1.08004 * 120.05545 * 180.25130 * 19 18 17 44 44 H 0.96998 * 119.99704 * 179.97438 * 24 23 21 45 45 H 1.08001 * 120.05853 * 179.97438 * 29 20 19 46 46 H 1.07999 * 119.94326 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7311 -1.2445 5 6 1.6413 -2.2057 -1.1672 6 1 0.5564 -2.2829 -1.0963 7 6 2.1155 -2.9209 -2.4061 8 8 2.8848 -3.8476 -2.3115 9 8 1.6829 -2.5283 -3.6146 10 6 2.2799 -2.8464 0.0671 11 6 1.7691 -2.1393 1.3265 12 1 2.2925 -2.5265 2.2007 13 6 0.2664 -2.3842 1.4783 14 7 2.0225 -0.6980 1.1954 15 6 2.6936 -0.0289 2.1537 16 8 3.1734 -0.6321 3.0939 17 6 2.8463 1.4368 2.0615 18 6 1.7804 2.2221 1.6060 19 6 1.9146 3.5762 1.5246 20 6 3.1321 4.1842 1.8893 21 6 3.2780 5.5850 1.8013 22 1 4.2531 6.0168 1.6312 23 6 2.1566 6.4164 1.9347 24 7 1.0242 5.9227 2.3598 25 14 2.2821 8.2299 1.5044 26 1 1.9454 8.4230 0.0710 27 1 1.3338 9.0047 2.3445 28 1 3.6669 8.7036 1.7558 29 6 4.2037 3.3893 2.3417 30 6 4.0584 2.0364 2.4241 31 1 -0.3633 0.2256 1.0027 32 1 -0.3633 0.7556 -0.6966 33 1 -0.3633 -0.9810 -0.3060 34 1 3.1297 -0.6521 -1.2905 35 1 1.6075 -0.2812 -2.1364 36 1 2.0144 -3.0177 -4.3799 37 1 2.0121 -3.9021 0.1087 38 1 3.3639 -2.7475 0.0088 39 1 0.0995 -3.3884 1.8677 40 1 -0.1529 -1.6525 2.1689 41 1 -0.2177 -2.2859 0.5067 42 1 0.8489 1.7547 1.3225 43 1 1.0905 4.1816 1.1770 44 1 0.2487 6.4979 2.4523 45 1 5.1390 3.8509 2.6219 46 1 4.8794 1.4261 2.7704 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594206189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:12 Heat of formation + Delta-G solvation = -123.726358 kcal Electronic energy + Delta-G solvation = -29285.780014 eV Core-core repulsion = 25332.124403 eV Total energy + Delta-G solvation = -3953.655611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14432 -41.02452 -39.34722 -38.50062 -37.12200 -35.70915 -34.39977 -33.89788 -31.79533 -31.36002 -30.79993 -27.76010 -27.06460 -26.42809 -24.03852 -23.19323 -22.64425 -22.46392 -21.44684 -19.36430 -19.19349 -19.06869 -18.45561 -17.79673 -17.28336 -16.78763 -16.53554 -16.07327 -15.92032 -15.40429 -15.31195 -15.14848 -14.83332 -14.54843 -14.45453 -14.08721 -13.96799 -13.91082 -13.69286 -13.57389 -13.39217 -13.31534 -12.81926 -12.67725 -12.64665 -12.52372 -12.50896 -12.32715 -12.02352 -11.96858 -11.73872 -11.57992 -11.48045 -11.32701 -11.27671 -11.14353 -10.57732 -9.68011 -9.47657 -9.29796 -8.69538 -6.45593 0.54048 1.12797 1.18088 1.41699 1.45219 1.54729 1.98246 2.04086 2.18074 2.20202 2.74157 3.43255 3.57806 3.66945 3.86244 3.88341 4.02597 4.09927 4.15750 4.29356 4.36238 4.41679 4.46454 4.55658 4.61156 4.64804 4.77107 4.89808 4.93494 4.96192 5.00901 5.02654 5.05890 5.11474 5.16453 5.19599 5.31951 5.37176 5.45504 5.61652 5.62886 5.74138 5.85014 6.00837 6.02562 6.26598 6.52918 6.59128 6.83141 6.92031 6.99840 7.35116 8.24905 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016860 B = 0.003181 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.337154 B = 8800.862531 C = 9392.297597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 H 0.100 0.900 4 C -0.113 4.113 5 C -0.077 4.077 6 H 0.143 0.857 7 C 0.492 3.508 8 O -0.551 6.551 9 O -0.506 6.506 10 C -0.104 4.104 11 C 0.134 3.866 12 H 0.077 0.923 13 C -0.163 4.163 14 N -0.599 5.599 15 C 0.575 3.425 16 O -0.603 6.603 17 C -0.279 4.279 18 C -0.060 4.060 19 C -0.187 4.187 20 C 0.101 3.899 21 C -0.481 4.481 22 H 0.081 0.919 23 C 0.037 3.963 24 N -0.810 5.810 25 Si 0.987 3.013 26 H -0.257 1.257 27 H -0.268 1.268 28 H -0.261 1.261 29 C -0.246 4.246 30 C -0.044 4.044 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.427 0.573 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.117 0.883 44 H 0.294 0.706 45 H 0.101 0.899 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 -10.898 -11.889 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 H 0.117 0.883 4 C -0.151 4.151 5 C -0.095 4.095 6 H 0.160 0.840 7 C 0.336 3.664 8 O -0.441 6.441 9 O -0.319 6.319 10 C -0.142 4.142 11 C 0.031 3.969 12 H 0.096 0.904 13 C -0.221 4.221 14 N -0.330 5.330 15 C 0.368 3.632 16 O -0.487 6.487 17 C -0.283 4.283 18 C -0.078 4.078 19 C -0.206 4.206 20 C 0.098 3.902 21 C -0.509 4.509 22 H 0.099 0.901 23 C -0.180 4.180 24 N -0.434 5.434 25 Si 0.807 3.193 26 H -0.181 1.181 27 H -0.192 1.192 28 H -0.185 1.185 29 C -0.266 4.266 30 C -0.063 4.063 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.289 0.711 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.146 0.854 43 H 0.135 0.865 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.047 -11.198 -10.996 17.203 hybrid contribution 0.811 0.459 -0.088 0.936 sum -6.235 -10.739 -11.084 16.645 Atomic orbital electron populations 1.22594 0.92899 1.04417 1.02873 1.21753 0.95968 0.97500 0.82982 0.88273 1.21905 1.01501 0.92495 0.99227 1.21153 1.04477 0.95323 0.88591 0.83992 1.23516 0.76690 0.80608 0.85589 1.90720 1.35008 1.30570 1.87838 1.84497 1.68714 1.61586 1.17145 1.21727 1.00106 1.00434 0.91946 1.21201 0.97900 0.79606 0.98146 0.90440 1.22508 0.93246 1.02734 1.03565 1.48208 1.55613 1.08817 1.20397 1.18598 0.75984 0.87565 0.81030 1.90620 1.51624 1.70994 1.35452 1.19146 0.97766 0.91368 1.20016 1.20907 0.96918 0.93622 0.96378 1.21069 0.99334 0.93493 1.06694 1.18110 0.91812 0.93870 0.86399 1.20039 0.95822 0.91704 1.43339 0.90075 1.26840 0.93701 1.06104 0.91340 1.69744 1.02594 1.40316 1.30781 0.85116 0.79487 0.75159 0.79492 1.18109 1.19241 1.18468 1.20849 1.00604 0.93447 1.11662 1.20422 0.95725 0.94379 0.95772 0.92721 0.89723 0.89117 0.92577 0.86845 0.71094 0.88530 0.92992 0.90097 0.93017 0.89212 0.85351 0.86524 0.89504 0.88051 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 7.00 71.98 0.50 -2.75 16 2 C 0.12 3.05 2.32 44.98 0.10 3.15 16 3 H 0.10 3.07 4.59 -2.39 -0.01 3.06 16 4 C -0.11 -2.31 4.77 30.67 0.15 -2.16 16 5 C -0.08 -1.37 2.28 -11.51 -0.03 -1.39 16 6 H 0.14 1.76 4.95 -2.39 -0.01 1.75 16 7 C 0.49 9.26 7.63 71.24 0.54 9.81 16 8 O -0.55 -14.22 16.74 21.98 0.37 -13.85 16 9 O -0.51 -6.43 13.30 -51.37 -0.68 -7.11 16 10 C -0.10 -2.31 4.13 30.67 0.13 -2.18 16 11 C 0.13 3.48 3.21 44.98 0.14 3.62 16 12 H 0.08 2.43 7.00 -2.39 -0.02 2.42 16 13 C -0.16 -3.08 7.99 71.98 0.58 -2.51 16 14 N -0.60 -18.72 2.50 -774.88 -1.93 -20.65 16 15 C 0.57 24.14 7.32 86.73 0.64 24.78 16 16 O -0.60 -29.28 16.33 -3.97 -0.06 -29.34 16 17 C -0.28 -12.55 5.20 -19.93 -0.10 -12.66 16 18 C -0.06 -2.56 7.27 22.25 0.16 -2.40 16 19 C -0.19 -9.02 8.60 22.47 0.19 -8.82 16 20 C 0.10 5.19 5.56 -21.28 -0.12 5.07 16 21 C -0.48 -24.26 9.06 23.46 0.21 -24.04 16 22 H 0.08 3.95 7.88 -2.91 -0.02 3.92 16 23 C 0.04 1.74 5.24 85.35 0.45 2.19 16 24 N -0.81 -38.86 10.81 21.87 0.24 -38.62 16 25 Si 0.99 35.01 29.58 68.60 2.03 37.04 16 26 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 27 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 28 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 29 C -0.25 -12.15 9.73 22.47 0.22 -11.93 16 30 C -0.04 -2.09 9.56 22.25 0.21 -1.88 16 31 H 0.05 1.22 6.82 -2.38 -0.02 1.21 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.09 1.23 3.85 -2.39 -0.01 1.22 16 34 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.11 1.79 8.08 -2.39 -0.02 1.77 16 36 H 0.43 2.03 9.10 -74.06 -0.67 1.36 16 37 H 0.10 1.87 8.07 -2.39 -0.02 1.85 16 38 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.05 1.15 7.62 -2.39 -0.02 1.13 16 41 H 0.09 1.23 3.85 -2.39 -0.01 1.22 16 42 H 0.13 4.67 4.77 -2.91 -0.01 4.65 16 43 H 0.12 5.74 6.17 -2.91 -0.02 5.72 16 44 H 0.29 12.60 8.29 -92.71 -0.77 11.83 16 45 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 46 H 0.10 4.45 8.05 -2.91 -0.02 4.43 16 Total: -1.00 -68.17 357.16 4.30 -63.87 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.37 Total: 32.76 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 3.98 Total: -24.10 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -1.70 Total: -59.27 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.38 Total: -50.30 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 2.03 Total: 37.04 kcal Total: -68.17 4.30 -63.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594206189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.853 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds