Wall clock time and date at job start Tue Mar 31 2020 17:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.58779 * 2 1 4 4 C 1.53192 * 109.58733 * 120.28634 * 2 1 3 5 5 C 1.53042 * 109.31170 * 65.14818 * 4 2 1 6 6 C 1.50702 * 109.45929 * 181.38776 * 5 4 2 7 7 O 1.20825 * 119.99825 * 359.97438 * 6 5 4 8 8 O 1.34221 * 119.99763 * 180.02562 * 6 5 4 9 9 C 1.53037 * 109.53697 * 61.36731 * 5 4 2 10 10 C 1.53192 * 109.31499 * 298.63434 * 9 5 4 11 11 H 1.08998 * 109.58299 * 294.84768 * 10 9 5 12 12 C 1.52997 * 109.58716 * 174.42290 * 10 9 5 13 13 N 1.46925 * 109.58607 * 239.57455 * 2 1 3 14 14 C 1.34774 * 120.63175 * 113.79802 * 13 2 1 15 15 O 1.21594 * 120.00095 * 174.57849 * 14 13 2 16 16 C 1.47638 * 120.00238 * 354.58552 * 14 13 2 17 17 C 1.40011 * 119.89216 * 324.39690 * 16 14 13 18 18 C 1.36317 * 120.10898 * 179.71752 * 17 16 14 19 19 C 1.40895 * 119.88826 * 0.55544 * 18 17 16 20 20 C 1.41103 * 120.10230 * 179.74278 * 19 18 17 21 21 H 1.08003 * 120.00358 * 330.67324 * 20 19 18 22 22 C 1.40231 * 120.00084 * 150.68347 * 20 19 18 23 23 N 1.30643 * 120.00056 * 160.85993 * 22 20 19 24 24 Si 1.86795 * 119.99758 * 340.85795 * 22 20 19 25 25 H 1.48504 * 109.47297 * 93.26171 * 24 22 20 26 26 H 1.48497 * 109.47239 * 213.26452 * 24 22 20 27 27 H 1.48504 * 109.47184 * 333.26527 * 24 22 20 28 28 C 1.40889 * 119.79358 * 359.71758 * 19 18 17 29 29 C 1.36314 * 119.88976 * 0.02562 * 28 19 18 30 30 H 1.09002 * 109.46822 * 299.71775 * 1 2 3 31 31 H 1.09004 * 109.46999 * 59.71083 * 1 2 3 32 32 H 1.08998 * 109.47263 * 179.71396 * 1 2 3 33 33 H 1.08997 * 109.49503 * 305.20181 * 4 2 1 34 34 H 1.08998 * 109.49585 * 185.10382 * 4 2 1 35 35 H 1.08994 * 109.46362 * 301.36322 * 5 4 2 36 36 H 0.96713 * 116.99707 * 179.97438 * 8 6 5 37 37 H 1.09009 * 109.49716 * 58.58307 * 9 5 4 38 38 H 1.08999 * 109.50198 * 178.68104 * 9 5 4 39 39 H 1.08999 * 109.47119 * 296.01601 * 12 10 9 40 40 H 1.09001 * 109.47383 * 56.02005 * 12 10 9 41 41 H 1.09004 * 109.47388 * 176.02259 * 12 10 9 42 42 H 1.07999 * 119.94932 * 359.97438 * 17 16 14 43 43 H 1.08003 * 120.06099 * 180.27347 * 18 17 16 44 44 H 0.97000 * 120.00006 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.05250 * 179.97438 * 28 19 18 46 46 H 1.08002 * 119.94733 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 1.6414 -2.2027 1.1728 6 6 2.1155 -2.9147 2.4135 7 8 2.7139 -2.3055 3.2683 8 8 1.8738 -4.2259 2.5684 9 6 2.2799 -2.8465 -0.0600 10 6 1.7691 -2.1426 -1.3211 11 1 0.6986 -2.3174 -1.4288 12 6 2.5064 -2.6867 -2.5464 13 7 2.0225 -0.7010 -1.1936 14 6 2.6936 -0.0342 -2.1536 15 8 3.1814 -0.6410 -3.0876 16 6 2.8366 1.4329 -2.0710 17 6 1.7918 2.2078 -1.5531 18 6 1.9213 3.5622 -1.4696 19 6 3.1045 4.1832 -1.9163 20 6 3.2413 5.5853 -1.8370 21 1 2.3680 6.2176 -1.9004 22 6 4.5112 6.1580 -1.6760 23 7 4.7025 7.4162 -1.9709 24 14 5.9291 5.1217 -1.0397 25 1 6.6806 4.5529 -2.1874 26 1 6.8361 5.9702 -0.2258 27 1 5.3979 4.0179 -0.2002 28 6 4.1509 3.3998 -2.4420 29 6 4.0141 2.0456 -2.5167 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6075 -0.2759 2.1371 34 1 3.1297 -0.6488 1.2921 35 1 0.5565 -2.2801 1.1018 36 1 2.1977 -4.6390 3.3807 37 1 3.3640 -2.7474 -0.0019 38 1 2.0122 -3.9024 -0.0990 39 1 3.5659 -2.4421 -2.4712 40 1 2.3857 -3.7690 -2.5922 41 1 2.0929 -2.2364 -3.4489 42 1 0.8833 1.7313 -1.2154 43 1 1.1166 4.1587 -1.0658 44 1 5.5808 7.8124 -1.8592 45 1 5.0594 3.8714 -2.7861 46 1 4.8157 1.4441 -2.9191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594206191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:10 Heat of formation + Delta-G solvation = -95.151957 kcal Electronic energy + Delta-G solvation = -29349.848447 eV Core-core repulsion = 25397.431915 eV Total energy + Delta-G solvation = -3952.416532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08094 -40.04097 -37.87102 -37.11491 -36.32376 -34.24846 -33.38445 -32.90623 -30.66157 -29.97321 -29.16138 -26.69675 -25.83903 -25.15017 -22.50638 -22.37718 -21.64246 -20.76708 -20.19791 -18.56768 -18.26258 -17.77632 -16.89997 -16.62506 -15.97610 -15.80369 -15.47672 -14.87782 -14.63392 -14.43449 -14.01329 -13.90955 -13.63454 -13.47139 -13.00668 -12.98595 -12.79875 -12.51643 -12.41011 -12.24234 -12.22573 -11.90540 -11.86024 -11.72496 -11.63801 -11.46085 -11.04963 -10.92423 -10.90571 -10.82832 -10.56763 -10.52706 -10.40033 -10.14351 -9.71341 -9.27654 -8.52896 -8.34272 -7.92399 -7.71447 -7.20982 -4.71608 1.96710 2.07285 2.62189 2.77498 2.99302 3.10195 3.18725 3.26846 3.56090 3.82788 4.35385 4.38136 4.46535 4.68227 4.85930 5.04565 5.11651 5.14152 5.25081 5.27350 5.33168 5.42128 5.52412 5.61922 5.75626 5.77150 5.82643 5.84186 5.93803 6.00960 6.01509 6.06889 6.18952 6.25954 6.34738 6.43657 6.55746 6.66308 6.70534 6.91845 6.98409 7.27114 7.36376 7.51213 7.64795 7.69994 7.90827 7.91727 8.12251 8.45032 8.56328 8.85183 9.78904 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.003496 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.730476 B = 8007.629645 C = 8565.919201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 H 0.127 0.873 4 C -0.114 4.114 5 C -0.079 4.079 6 C 0.482 3.518 7 O -0.512 6.512 8 O -0.517 6.517 9 C -0.122 4.122 10 C 0.148 3.852 11 H 0.069 0.931 12 C -0.133 4.133 13 N -0.611 5.611 14 C 0.578 3.422 15 O -0.555 6.555 16 C -0.284 4.284 17 C -0.059 4.059 18 C -0.218 4.218 19 C 0.106 3.894 20 C -0.428 4.428 21 H 0.095 0.905 22 C 0.083 3.917 23 N -0.787 5.787 24 Si 0.916 3.084 25 H -0.266 1.266 26 H -0.288 1.288 27 H -0.243 1.243 28 C -0.252 4.252 29 C -0.013 4.013 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.408 0.592 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.291 0.709 45 H 0.104 0.896 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 -17.077 7.255 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 H 0.144 0.856 4 C -0.152 4.152 5 C -0.098 4.098 6 C 0.324 3.676 7 O -0.400 6.400 8 O -0.329 6.329 9 C -0.160 4.160 10 C 0.045 3.955 11 H 0.086 0.914 12 C -0.190 4.190 13 N -0.345 5.345 14 C 0.373 3.627 15 O -0.435 6.435 16 C -0.288 4.288 17 C -0.077 4.077 18 C -0.237 4.237 19 C 0.102 3.898 20 C -0.454 4.454 21 H 0.113 0.887 22 C -0.139 4.139 23 N -0.409 5.409 24 Si 0.742 3.258 25 H -0.192 1.192 26 H -0.216 1.216 27 H -0.166 1.166 28 C -0.271 4.271 29 C -0.032 4.032 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.266 0.734 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.102 0.898 45 H 0.122 0.878 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.958 -16.753 6.598 18.966 hybrid contribution 0.811 -0.471 0.948 1.333 sum -5.146 -17.224 7.546 19.496 Atomic orbital electron populations 1.22288 0.95369 1.02156 1.02930 1.21748 0.94036 0.98980 0.83426 0.85569 1.21901 1.03015 0.91621 0.98678 1.21146 1.02872 0.95560 0.90250 1.23639 0.75795 0.79915 0.88244 1.90734 1.38312 1.67154 1.43767 1.84547 1.75588 1.25286 1.47493 1.22047 1.01425 0.99960 0.92587 1.21123 0.99135 0.80388 0.94878 0.91354 1.22184 1.02461 0.97503 0.96812 1.48108 1.57691 1.07642 1.21097 1.18602 0.75772 0.87734 0.80545 1.90719 1.49248 1.69108 1.34466 1.18905 0.99324 0.90544 1.20037 1.20822 0.96634 0.94276 0.95984 1.20718 1.00101 0.93504 1.09416 1.17834 0.91338 0.93183 0.87413 1.19730 0.94794 0.90998 1.39893 0.88665 1.26354 1.00460 0.95292 0.91810 1.69612 1.25880 1.13808 1.31587 0.86241 0.79255 0.80228 0.80092 1.19157 1.21564 1.16568 1.20754 1.01382 0.93654 1.11327 1.20322 0.95052 0.94144 0.93678 0.91171 0.91429 0.92378 0.89769 0.90345 0.87046 0.73382 0.90821 0.89725 0.90729 0.94584 0.90767 0.87280 0.87792 0.89848 0.87784 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 8.40 37.16 0.31 -1.41 16 2 C 0.12 1.55 2.30 -67.60 -0.16 1.40 16 3 H 0.13 1.90 4.44 -51.93 -0.23 1.67 16 4 C -0.11 -1.33 4.13 -26.61 -0.11 -1.44 16 5 C -0.08 -0.78 2.38 -91.73 -0.22 -1.00 16 6 C 0.48 5.07 7.63 36.01 0.27 5.34 16 7 O -0.51 -7.06 16.74 -18.75 -0.31 -7.38 16 8 O -0.52 -4.00 13.30 -39.23 -0.52 -4.52 16 9 C -0.12 -1.26 4.59 -26.61 -0.12 -1.38 16 10 C 0.15 1.81 3.08 -67.60 -0.21 1.60 16 11 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 12 C -0.13 -1.81 7.59 37.16 0.28 -1.53 16 13 N -0.61 -8.99 2.68 -158.90 -0.43 -9.41 16 14 C 0.58 10.91 7.29 -12.42 -0.09 10.82 16 15 O -0.55 -11.53 12.21 5.28 0.06 -11.46 16 16 C -0.28 -5.83 5.31 -104.73 -0.56 -6.39 16 17 C -0.06 -1.13 7.27 -39.61 -0.29 -1.41 16 18 C -0.22 -4.64 9.73 -39.27 -0.38 -5.02 16 19 C 0.11 2.53 5.11 -106.80 -0.55 1.98 16 20 C -0.43 -10.79 9.56 -37.75 -0.36 -11.15 16 21 H 0.10 2.49 8.06 -52.48 -0.42 2.07 16 22 C 0.08 2.05 5.39 -17.31 -0.09 1.96 16 23 N -0.79 -19.66 13.92 55.56 0.77 -18.88 16 24 Si 0.92 19.85 24.55 -169.99 -4.17 15.68 16 25 H -0.27 -5.66 6.59 56.52 0.37 -5.29 16 26 H -0.29 -6.00 7.11 56.52 0.40 -5.59 16 27 H -0.24 -5.39 6.99 56.52 0.40 -5.00 16 28 C -0.25 -5.90 7.20 -39.27 -0.28 -6.18 16 29 C -0.01 -0.28 9.54 -39.61 -0.38 -0.66 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.75 6.69 -51.93 -0.35 0.40 16 32 H 0.06 0.50 5.72 -51.93 -0.30 0.21 16 33 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.08 1.08 8.13 -51.93 -0.42 0.65 16 35 H 0.11 0.90 6.50 -51.93 -0.34 0.56 16 36 H 0.41 1.52 9.10 45.56 0.41 1.93 16 37 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.07 1.19 6.69 -51.93 -0.35 0.84 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 1.17 6.80 -51.93 -0.35 0.82 16 42 H 0.11 1.75 4.06 -52.49 -0.21 1.53 16 43 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 44 H 0.29 6.54 8.29 -40.82 -0.34 6.20 16 45 H 0.10 2.43 4.66 -52.49 -0.24 2.19 16 46 H 0.10 2.13 7.99 -52.49 -0.42 1.71 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -29.35 353.84 -7.50 -36.85 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.31 Total: 8.29 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.92 Total: -14.49 kcal Atomic # 7 Polarization: -28.65 SS G_CDS: 0.35 Total: -28.30 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.77 Total: -23.36 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.17 Total: 15.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.35 -7.50 -36.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594206191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.305 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds