Wall clock time and date at job start Tue Mar 31 2020 17:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.58779 * 2 1 4 4 C 1.53192 * 109.58733 * 120.28634 * 2 1 3 5 5 C 1.53042 * 109.31170 * 65.14818 * 4 2 1 6 6 C 1.50702 * 109.45929 * 181.38776 * 5 4 2 7 7 O 1.20825 * 119.99825 * 359.97438 * 6 5 4 8 8 O 1.34221 * 119.99763 * 180.02562 * 6 5 4 9 9 C 1.53037 * 109.53697 * 61.36731 * 5 4 2 10 10 C 1.53192 * 109.31499 * 298.63434 * 9 5 4 11 11 H 1.08998 * 109.58299 * 294.84768 * 10 9 5 12 12 C 1.52997 * 109.58716 * 174.42290 * 10 9 5 13 13 N 1.46925 * 109.58607 * 239.57455 * 2 1 3 14 14 C 1.34774 * 120.63175 * 113.79802 * 13 2 1 15 15 O 1.21594 * 120.00095 * 174.57849 * 14 13 2 16 16 C 1.47638 * 120.00238 * 354.58552 * 14 13 2 17 17 C 1.40011 * 119.89216 * 324.39690 * 16 14 13 18 18 C 1.36317 * 120.10898 * 179.71752 * 17 16 14 19 19 C 1.40895 * 119.88826 * 0.55544 * 18 17 16 20 20 C 1.41103 * 120.10230 * 179.74278 * 19 18 17 21 21 H 1.08003 * 120.00358 * 330.67324 * 20 19 18 22 22 C 1.40231 * 120.00084 * 150.68347 * 20 19 18 23 23 N 1.30643 * 120.00056 * 160.85993 * 22 20 19 24 24 Si 1.86795 * 119.99758 * 340.85795 * 22 20 19 25 25 H 1.48504 * 109.47297 * 93.26171 * 24 22 20 26 26 H 1.48497 * 109.47239 * 213.26452 * 24 22 20 27 27 H 1.48504 * 109.47184 * 333.26527 * 24 22 20 28 28 C 1.40889 * 119.79358 * 359.71758 * 19 18 17 29 29 C 1.36314 * 119.88976 * 0.02562 * 28 19 18 30 30 H 1.09002 * 109.46822 * 299.71775 * 1 2 3 31 31 H 1.09004 * 109.46999 * 59.71083 * 1 2 3 32 32 H 1.08998 * 109.47263 * 179.71396 * 1 2 3 33 33 H 1.08997 * 109.49503 * 305.20181 * 4 2 1 34 34 H 1.08998 * 109.49585 * 185.10382 * 4 2 1 35 35 H 1.08994 * 109.46362 * 301.36322 * 5 4 2 36 36 H 0.96713 * 116.99707 * 179.97438 * 8 6 5 37 37 H 1.09009 * 109.49716 * 58.58307 * 9 5 4 38 38 H 1.08999 * 109.50198 * 178.68104 * 9 5 4 39 39 H 1.08999 * 109.47119 * 296.01601 * 12 10 9 40 40 H 1.09001 * 109.47383 * 56.02005 * 12 10 9 41 41 H 1.09004 * 109.47388 * 176.02259 * 12 10 9 42 42 H 1.07999 * 119.94932 * 359.97438 * 17 16 14 43 43 H 1.08003 * 120.06099 * 180.27347 * 18 17 16 44 44 H 0.97000 * 120.00006 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.05250 * 179.97438 * 28 19 18 46 46 H 1.08002 * 119.94733 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 1.6414 -2.2027 1.1728 6 6 2.1155 -2.9147 2.4135 7 8 2.7139 -2.3055 3.2683 8 8 1.8738 -4.2259 2.5684 9 6 2.2799 -2.8465 -0.0600 10 6 1.7691 -2.1426 -1.3211 11 1 0.6986 -2.3174 -1.4288 12 6 2.5064 -2.6867 -2.5464 13 7 2.0225 -0.7010 -1.1936 14 6 2.6936 -0.0342 -2.1536 15 8 3.1814 -0.6410 -3.0876 16 6 2.8366 1.4329 -2.0710 17 6 1.7918 2.2078 -1.5531 18 6 1.9213 3.5622 -1.4696 19 6 3.1045 4.1832 -1.9163 20 6 3.2413 5.5853 -1.8370 21 1 2.3680 6.2176 -1.9004 22 6 4.5112 6.1580 -1.6760 23 7 4.7025 7.4162 -1.9709 24 14 5.9291 5.1217 -1.0397 25 1 6.6806 4.5529 -2.1874 26 1 6.8361 5.9702 -0.2258 27 1 5.3979 4.0179 -0.2002 28 6 4.1509 3.3998 -2.4420 29 6 4.0141 2.0456 -2.5167 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6075 -0.2759 2.1371 34 1 3.1297 -0.6488 1.2921 35 1 0.5565 -2.2801 1.1018 36 1 2.1977 -4.6390 3.3807 37 1 3.3640 -2.7474 -0.0019 38 1 2.0122 -3.9024 -0.0990 39 1 3.5659 -2.4421 -2.4712 40 1 2.3857 -3.7690 -2.5922 41 1 2.0929 -2.2364 -3.4489 42 1 0.8833 1.7313 -1.2154 43 1 1.1166 4.1587 -1.0658 44 1 5.5808 7.8124 -1.8592 45 1 5.0594 3.8714 -2.7861 46 1 4.8157 1.4441 -2.9191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594206191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:09 Heat of formation + Delta-G solvation = -113.062288 kcal Electronic energy + Delta-G solvation = -29350.625097 eV Core-core repulsion = 25397.431915 eV Total energy + Delta-G solvation = -3953.193182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11949 -41.10681 -39.43694 -38.43411 -37.09875 -35.84478 -34.68795 -33.99733 -32.32173 -31.67959 -30.27619 -27.70753 -27.42941 -26.08087 -23.87659 -23.72330 -22.93935 -22.17284 -21.31254 -19.80821 -19.56258 -19.04293 -17.97515 -17.74174 -17.23356 -17.05388 -16.77645 -16.12827 -15.96017 -15.88867 -15.44637 -15.06251 -14.81531 -14.63920 -14.46265 -14.23575 -14.13960 -13.94989 -13.74403 -13.57863 -13.48410 -13.18080 -12.87455 -12.77984 -12.70753 -12.52761 -12.44939 -12.40089 -12.12754 -12.01061 -11.95093 -11.73614 -11.53555 -11.49992 -11.41608 -11.02167 -9.98703 -9.68668 -9.55556 -9.41240 -9.04494 -6.60437 0.35779 0.87260 1.18498 1.23285 1.33583 1.43694 1.91958 2.03859 2.05910 2.15274 2.62073 3.43883 3.50479 3.56259 3.79598 3.92635 4.01545 4.12127 4.18316 4.26299 4.31745 4.37182 4.42916 4.51011 4.60023 4.66471 4.69127 4.86173 4.87153 4.90848 4.93859 4.97979 5.03665 5.08517 5.10702 5.16367 5.23846 5.42509 5.47394 5.50597 5.61853 5.63629 5.76229 5.85764 5.87477 6.11956 6.28229 6.52255 6.62071 6.73184 6.99684 7.39806 8.01579 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.003496 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.730476 B = 8007.629645 C = 8565.919201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 H 0.101 0.899 4 C -0.110 4.110 5 C -0.075 4.075 6 C 0.490 3.510 7 O -0.552 6.552 8 O -0.507 6.507 9 C -0.113 4.113 10 C 0.144 3.856 11 H 0.101 0.899 12 C -0.127 4.127 13 N -0.602 5.602 14 C 0.573 3.427 15 O -0.579 6.579 16 C -0.276 4.276 17 C -0.043 4.043 18 C -0.224 4.224 19 C 0.093 3.907 20 C -0.465 4.465 21 H 0.071 0.929 22 C 0.056 3.944 23 N -0.824 5.824 24 Si 0.960 3.040 25 H -0.263 1.263 26 H -0.272 1.272 27 H -0.254 1.254 28 C -0.264 4.264 29 C -0.029 4.029 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.144 0.856 36 H 0.427 0.573 37 H 0.052 0.948 38 H 0.113 0.887 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.049 0.951 42 H 0.148 0.852 43 H 0.119 0.881 44 H 0.299 0.701 45 H 0.099 0.901 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 -20.757 8.692 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 H 0.119 0.881 4 C -0.148 4.148 5 C -0.093 4.093 6 C 0.334 3.666 7 O -0.443 6.443 8 O -0.320 6.320 9 C -0.152 4.152 10 C 0.042 3.958 11 H 0.119 0.881 12 C -0.184 4.184 13 N -0.335 5.335 14 C 0.366 3.634 15 O -0.461 6.461 16 C -0.281 4.281 17 C -0.062 4.062 18 C -0.244 4.244 19 C 0.090 3.910 20 C -0.492 4.492 21 H 0.089 0.911 22 C -0.163 4.163 23 N -0.448 5.448 24 Si 0.784 3.216 25 H -0.189 1.189 26 H -0.198 1.198 27 H -0.178 1.178 28 C -0.283 4.283 29 C -0.048 4.048 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.161 0.839 36 H 0.288 0.712 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.165 0.835 43 H 0.137 0.863 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.089 -20.468 8.065 23.440 hybrid contribution 1.350 0.337 0.517 1.484 sum -6.739 -20.131 8.582 22.898 Atomic orbital electron populations 1.22284 0.92404 1.04057 1.03627 1.21849 0.96221 0.97567 0.82940 0.88142 1.21792 1.01284 0.93376 0.98342 1.21117 1.04596 0.93864 0.89752 1.23623 0.74778 0.80501 0.87733 1.90739 1.40148 1.68176 1.45210 1.84490 1.75061 1.23755 1.48741 1.21973 1.00178 1.01364 0.91646 1.21400 1.00804 0.78411 0.95140 0.88121 1.22020 1.00460 0.99420 0.96520 1.48128 1.56015 1.09003 1.20323 1.18393 0.76581 0.87046 0.81340 1.90737 1.50346 1.69203 1.35823 1.19361 0.98694 0.92366 1.17645 1.21147 0.97483 0.93335 0.94190 1.20973 0.99675 0.94597 1.09107 1.18005 0.92529 0.92825 0.87666 1.19685 0.94583 0.91575 1.43389 0.91053 1.26845 1.01787 0.95979 0.91654 1.69620 1.26930 1.14784 1.33492 0.85579 0.77522 0.78912 0.79634 1.18885 1.19799 1.17815 1.20796 1.01385 0.94214 1.11918 1.20490 0.96154 0.93848 0.94275 0.89160 0.92070 0.89906 0.88756 0.93179 0.83854 0.71167 0.92875 0.86852 0.93794 0.91398 0.93178 0.83493 0.86317 0.88972 0.88372 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 8.40 71.98 0.60 -1.96 16 2 C 0.12 2.64 2.30 44.98 0.10 2.74 16 3 H 0.10 2.81 4.44 -2.39 -0.01 2.80 16 4 C -0.11 -2.27 4.13 30.67 0.13 -2.15 16 5 C -0.07 -1.16 2.38 -11.51 -0.03 -1.18 16 6 C 0.49 8.59 7.63 71.24 0.54 9.13 16 7 O -0.55 -14.08 16.74 21.97 0.37 -13.71 16 8 O -0.51 -5.64 13.30 -51.33 -0.68 -6.33 16 9 C -0.11 -1.88 4.59 30.67 0.14 -1.74 16 10 C 0.14 2.97 3.08 44.97 0.14 3.11 16 11 H 0.10 1.55 7.48 -2.39 -0.02 1.53 16 12 C -0.13 -3.17 7.59 71.98 0.55 -2.63 16 13 N -0.60 -16.17 2.68 -774.90 -2.08 -18.25 16 14 C 0.57 20.99 7.29 86.73 0.63 21.62 16 15 O -0.58 -23.86 12.21 -4.01 -0.05 -23.90 16 16 C -0.28 -11.19 5.31 -19.93 -0.11 -11.30 16 17 C -0.04 -1.61 7.27 22.25 0.16 -1.45 16 18 C -0.22 -9.50 9.73 22.47 0.22 -9.28 16 19 C 0.09 4.55 5.11 -21.28 -0.11 4.44 16 20 C -0.46 -24.62 9.56 23.46 0.22 -24.39 16 21 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 22 C 0.06 2.87 5.39 85.35 0.46 3.33 16 23 N -0.82 -42.87 13.92 21.87 0.30 -42.56 16 24 Si 0.96 41.95 24.55 68.60 1.68 43.63 16 25 H -0.26 -11.24 6.59 99.48 0.66 -10.59 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.25 -11.45 6.99 99.48 0.70 -10.75 16 28 C -0.26 -12.68 7.20 22.47 0.16 -12.51 16 29 C -0.03 -1.28 9.54 22.25 0.21 -1.07 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.06 6.69 -2.38 -0.02 1.05 16 32 H 0.08 0.90 5.72 -2.39 -0.01 0.89 16 33 H 0.09 1.79 8.07 -2.39 -0.02 1.77 16 34 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 35 H 0.14 1.39 6.50 -2.39 -0.02 1.37 16 36 H 0.43 1.52 9.10 -74.05 -0.67 0.85 16 37 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.11 1.32 8.08 -2.39 -0.02 1.30 16 39 H 0.04 1.36 6.69 -2.39 -0.02 1.35 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.05 1.50 6.80 -2.38 -0.02 1.48 16 42 H 0.15 4.27 4.06 -2.91 -0.01 4.26 16 43 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 44 H 0.30 13.93 8.29 -92.71 -0.77 13.16 16 45 H 0.10 4.75 4.66 -2.91 -0.01 4.74 16 46 H 0.10 4.48 7.99 -2.91 -0.02 4.46 16 Total: -1.00 -67.63 353.84 3.88 -63.75 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.30 Total: 22.65 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.03 Total: -25.29 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -1.77 Total: -60.81 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.36 Total: -43.94 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.68 Total: 43.63 kcal Total: -67.63 3.88 -63.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594206191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.309 kcal (2) G-P(sol) polarization free energy of solvation -67.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds