Wall clock time and date at job start Tue Mar 31 2020 17:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.70418 * 2 1 4 4 C 1.52767 * 109.50809 * 239.87788 * 2 1 3 5 5 C 1.53040 * 109.38098 * 185.70875 * 4 2 1 6 6 C 1.50698 * 109.46170 * 181.26026 * 5 4 2 7 7 O 1.20824 * 120.00407 * 239.93630 * 6 5 4 8 8 O 1.34227 * 120.00044 * 59.93012 * 6 5 4 9 9 C 1.53050 * 109.53809 * 61.24091 * 5 4 2 10 10 C 1.53192 * 109.31053 * 298.63638 * 9 5 4 11 11 H 1.09004 * 109.58048 * 174.42329 * 10 9 5 12 12 C 1.52999 * 109.70210 * 294.77318 * 10 9 5 13 13 N 1.46919 * 108.77839 * 54.63283 * 10 9 5 14 14 C 1.34776 * 120.63158 * 126.36781 * 13 10 9 15 15 O 1.21589 * 120.00416 * 186.09926 * 14 13 10 16 16 C 1.47646 * 119.99791 * 6.09751 * 14 13 10 17 17 C 1.40014 * 119.89348 * 215.61997 * 16 14 13 18 18 C 1.36314 * 120.10520 * 180.02562 * 17 16 14 19 19 C 1.40888 * 119.89340 * 359.97438 * 18 17 16 20 20 C 1.41116 * 120.10496 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99821 * 210.28126 * 20 19 18 22 22 C 1.40223 * 119.99695 * 30.28150 * 20 19 18 23 23 N 1.30639 * 120.00301 * 24.22048 * 22 20 19 24 24 Si 1.86804 * 119.99525 * 204.21599 * 22 20 19 25 25 H 1.48507 * 109.47023 * 60.00266 * 24 22 20 26 26 H 1.48499 * 109.47292 * 300.00027 * 24 22 20 27 27 H 1.48503 * 109.46856 * 180.02562 * 24 22 20 28 28 C 1.40886 * 119.79244 * 0.25323 * 19 18 17 29 29 C 1.36323 * 119.89099 * 359.50892 * 28 19 18 30 30 H 1.08992 * 109.47312 * 301.47152 * 1 2 3 31 31 H 1.09007 * 109.46842 * 61.47134 * 1 2 3 32 32 H 1.08993 * 109.47675 * 181.46593 * 1 2 3 33 33 H 1.08996 * 109.56617 * 65.67391 * 4 2 1 34 34 H 1.09000 * 109.38520 * 305.63687 * 4 2 1 35 35 H 1.08996 * 109.46110 * 301.22265 * 5 4 2 36 36 H 0.96698 * 117.00212 * 179.97438 * 8 6 5 37 37 H 1.09002 * 109.49656 * 178.68170 * 9 5 4 38 38 H 1.08999 * 109.49317 * 58.58378 * 9 5 4 39 39 H 1.09002 * 109.46880 * 179.36244 * 12 10 9 40 40 H 1.08998 * 109.47622 * 299.36672 * 12 10 9 41 41 H 1.08998 * 109.47173 * 59.36490 * 12 10 9 42 42 H 1.07995 * 119.94742 * 359.97261 * 17 16 14 43 43 H 1.08000 * 120.05710 * 180.02562 * 18 17 16 44 44 H 0.97000 * 120.00257 * 6.07734 * 23 22 20 45 45 H 1.08003 * 120.05558 * 179.72502 * 28 19 18 46 46 H 1.07996 * 119.94592 * 180.24996 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8463 -1.1726 6 6 4.0720 -1.5315 -2.4149 7 8 4.6819 -2.5706 -2.3253 8 8 3.8469 -0.9874 -3.6211 9 6 3.9522 -1.6688 0.0583 10 6 3.4643 -0.9520 1.3212 11 1 3.6502 -1.5799 2.1926 12 6 4.2058 0.3770 1.4790 13 7 2.0225 -0.6995 1.1945 14 6 1.1672 -1.1069 2.1532 15 8 -0.0318 -0.9920 1.9870 16 6 1.6862 -1.6925 3.4052 17 6 0.9871 -2.7311 4.0321 18 6 1.4621 -3.2747 5.1884 19 6 2.6588 -2.7901 5.7523 20 6 3.1543 -3.3492 6.9496 21 1 3.7270 -2.7402 7.6334 22 6 2.9030 -4.6953 7.2513 23 7 2.6518 -5.5442 6.2906 24 14 2.9278 -5.2747 9.0270 25 1 1.9003 -4.5352 9.8034 26 1 4.2687 -5.0201 9.6122 27 1 2.6346 -6.7297 9.0770 28 6 3.3562 -1.7417 5.1204 29 6 2.8759 -1.2077 3.9617 30 1 -0.3633 0.5365 0.8764 31 1 -0.3633 0.4908 -0.9030 32 1 -0.3634 -1.0272 0.0263 33 1 1.7633 -0.1568 -2.1350 34 1 1.5963 -1.7170 -1.2942 35 1 4.0057 0.1473 -1.0995 36 1 4.1925 -1.4631 -4.3888 37 1 5.0362 -1.7763 0.0968 38 1 3.4903 -2.6542 -0.0021 39 1 3.8477 0.8889 2.3722 40 1 5.2751 0.1876 1.5728 41 1 4.0227 1.0013 0.6045 42 1 0.0696 -3.1016 3.5993 43 1 0.9224 -4.0760 5.6711 44 1 2.7254 -5.2646 5.3647 45 1 4.2716 -1.3640 5.5514 46 1 3.4119 -0.4067 3.4744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594206192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:14 Heat of formation + Delta-G solvation = -104.050716 kcal Electronic energy + Delta-G solvation = -29252.219827 eV Core-core repulsion = 25299.417415 eV Total energy + Delta-G solvation = -3952.802411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.05563 -40.00490 -37.83780 -37.08959 -36.30287 -34.45367 -33.29611 -32.87274 -30.17297 -29.58457 -28.99267 -26.65455 -25.67281 -25.14182 -22.57141 -22.37588 -21.35070 -20.84194 -20.19650 -18.48700 -18.25191 -18.11857 -16.91910 -16.48481 -15.93420 -15.75446 -15.11753 -14.80961 -14.38467 -14.32011 -14.05068 -13.94647 -13.68129 -13.54860 -13.07226 -12.84712 -12.58196 -12.49979 -12.31371 -12.16540 -12.02309 -11.85909 -11.72361 -11.66490 -11.46495 -11.36746 -11.12240 -11.03786 -10.94387 -10.79230 -10.55034 -10.51976 -10.38392 -9.81300 -9.68719 -9.17864 -8.49696 -8.30518 -7.91656 -7.68652 -7.38039 -4.67663 1.98825 2.20059 2.76017 2.81370 3.04810 3.09654 3.27109 3.30413 3.66370 3.88186 4.38133 4.44522 4.48701 4.70767 4.88746 5.06740 5.14933 5.16353 5.29063 5.31468 5.35260 5.44777 5.55019 5.65069 5.78154 5.81585 5.85581 5.88099 5.96719 6.04108 6.09176 6.11780 6.22029 6.28292 6.37922 6.58647 6.62835 6.80369 6.88517 6.99860 7.21860 7.42764 7.54341 7.58027 7.65173 7.66889 7.95642 8.00345 8.09826 8.52476 8.65378 8.90427 9.84296 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.003122 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.526052 B = 8967.883447 C = 9624.372355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.148 3.852 3 H 0.068 0.932 4 C -0.122 4.122 5 C -0.079 4.079 6 C 0.482 3.518 7 O -0.512 6.512 8 O -0.517 6.517 9 C -0.114 4.114 10 C 0.123 3.877 11 H 0.125 0.875 12 C -0.169 4.169 13 N -0.612 5.612 14 C 0.579 3.421 15 O -0.556 6.556 16 C -0.287 4.287 17 C -0.023 4.023 18 C -0.225 4.225 19 C 0.110 3.890 20 C -0.505 4.505 21 H 0.081 0.919 22 C 0.037 3.963 23 N -0.779 5.779 24 Si 1.066 2.934 25 H -0.272 1.272 26 H -0.274 1.274 27 H -0.272 1.272 28 C -0.232 4.232 29 C -0.058 4.058 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.408 0.592 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.302 0.698 45 H 0.098 0.902 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 8.783 -13.125 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.044 3.956 3 H 0.086 0.914 4 C -0.160 4.160 5 C -0.098 4.098 6 C 0.324 3.676 7 O -0.399 6.399 8 O -0.329 6.329 9 C -0.152 4.152 10 C 0.020 3.980 11 H 0.143 0.857 12 C -0.227 4.227 13 N -0.346 5.346 14 C 0.374 3.626 15 O -0.437 6.437 16 C -0.292 4.292 17 C -0.042 4.042 18 C -0.245 4.245 19 C 0.107 3.893 20 C -0.531 4.531 21 H 0.099 0.901 22 C -0.187 4.187 23 N -0.401 5.401 24 Si 0.889 3.111 25 H -0.198 1.198 26 H -0.199 1.199 27 H -0.196 1.196 28 C -0.251 4.251 29 C -0.076 4.076 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.266 0.734 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.789 7.393 -11.926 14.306 hybrid contribution 0.721 1.032 -1.695 2.112 sum 3.510 8.425 -13.621 16.396 Atomic orbital electron populations 1.22193 0.92241 1.03905 1.00615 1.21029 0.96111 0.94703 0.83719 0.91428 1.21978 0.91910 1.02801 0.99346 1.21144 0.98198 1.01074 0.89392 1.23637 0.75946 0.83141 0.84867 1.90735 1.38434 1.23496 1.87270 1.84544 1.75042 1.56057 1.17280 1.21898 1.02294 0.99249 0.91747 1.21704 0.79971 0.97116 0.99223 0.85714 1.22284 1.00610 0.97477 1.02320 1.48114 1.06841 1.59373 1.20251 1.18635 0.85286 0.75810 0.82873 1.90707 1.15826 1.56644 1.80491 1.18877 1.02236 1.08191 0.99864 1.20336 0.96416 0.93463 0.93997 1.20827 0.98357 1.06082 0.99190 1.17810 0.89812 0.90603 0.91094 1.20789 1.30336 0.97982 1.04035 0.90069 1.27183 0.91158 0.93311 1.07047 1.70381 1.27624 1.38135 1.03925 0.83615 0.78121 0.77184 0.72196 1.19759 1.19919 1.19645 1.20709 1.01521 1.04808 0.98102 1.20786 0.93711 0.97498 0.95640 0.90413 0.94612 0.91093 0.89705 0.90831 0.87076 0.73393 0.89819 0.90333 0.91481 0.91238 0.92398 0.88488 0.87611 0.88465 0.88409 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 7.58 37.16 0.28 -1.61 16 2 C 0.15 1.90 3.07 -67.82 -0.21 1.69 16 3 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 4 C -0.12 -1.33 4.56 -26.83 -0.12 -1.45 16 5 C -0.08 -0.82 2.39 -91.73 -0.22 -1.04 16 6 C 0.48 5.30 7.63 36.00 0.27 5.57 16 7 O -0.51 -7.31 16.74 -18.75 -0.31 -7.62 16 8 O -0.52 -4.21 13.30 -39.25 -0.52 -4.73 16 9 C -0.11 -1.41 4.13 -26.61 -0.11 -1.52 16 10 C 0.12 1.67 2.30 -67.60 -0.16 1.52 16 11 H 0.13 2.00 4.50 -51.93 -0.23 1.77 16 12 C -0.17 -1.84 8.41 37.16 0.31 -1.52 16 13 N -0.61 -9.46 2.68 -159.15 -0.43 -9.88 16 14 C 0.58 11.42 7.28 -12.42 -0.09 11.33 16 15 O -0.56 -12.03 12.22 5.29 0.06 -11.97 16 16 C -0.29 -6.19 5.30 -104.73 -0.55 -6.74 16 17 C -0.02 -0.53 9.54 -39.61 -0.38 -0.91 16 18 C -0.23 -5.54 7.93 -39.27 -0.31 -5.85 16 19 C 0.11 2.73 5.19 -106.80 -0.55 2.17 16 20 C -0.50 -12.50 8.96 -37.75 -0.34 -12.84 16 21 H 0.08 1.94 7.96 -52.48 -0.42 1.52 16 22 C 0.04 0.88 4.93 -17.31 -0.09 0.80 16 23 N -0.78 -19.63 12.45 55.56 0.69 -18.94 16 24 Si 1.07 20.27 30.00 -169.99 -5.10 15.17 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 26 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 27 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 28 C -0.23 -5.19 9.73 -39.27 -0.38 -5.57 16 29 C -0.06 -1.17 7.28 -39.61 -0.29 -1.46 16 30 H 0.08 1.28 6.60 -51.93 -0.34 0.94 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 1.17 6.89 -51.93 -0.36 0.81 16 33 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.11 0.96 6.50 -51.93 -0.34 0.62 16 36 H 0.41 1.67 9.10 45.56 0.41 2.08 16 37 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 38 H 0.08 1.14 8.13 -51.93 -0.42 0.71 16 39 H 0.07 0.79 6.65 -51.93 -0.35 0.45 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.54 5.76 -51.93 -0.30 0.24 16 42 H 0.10 2.20 8.00 -52.49 -0.42 1.78 16 43 H 0.11 2.69 6.81 -52.49 -0.36 2.33 16 44 H 0.30 7.81 6.83 -40.82 -0.28 7.53 16 45 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 46 H 0.11 1.81 4.05 -52.49 -0.21 1.60 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -29.47 358.84 -8.45 -37.92 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.33 Total: 12.08 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.93 Total: -17.44 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: 0.26 Total: -28.82 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.77 Total: -24.32 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.10 Total: 15.17 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.47 -8.45 -37.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594206192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.132 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds