Wall clock time and date at job start Tue Mar 31 2020 17:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.70418 * 2 1 4 4 C 1.52767 * 109.50809 * 239.87788 * 2 1 3 5 5 C 1.53040 * 109.38098 * 185.70875 * 4 2 1 6 6 C 1.50698 * 109.46170 * 181.26026 * 5 4 2 7 7 O 1.20824 * 120.00407 * 239.93630 * 6 5 4 8 8 O 1.34227 * 120.00044 * 59.93012 * 6 5 4 9 9 C 1.53050 * 109.53809 * 61.24091 * 5 4 2 10 10 C 1.53192 * 109.31053 * 298.63638 * 9 5 4 11 11 H 1.09004 * 109.58048 * 174.42329 * 10 9 5 12 12 C 1.52999 * 109.70210 * 294.77318 * 10 9 5 13 13 N 1.46919 * 108.77839 * 54.63283 * 10 9 5 14 14 C 1.34776 * 120.63158 * 126.36781 * 13 10 9 15 15 O 1.21589 * 120.00416 * 186.09926 * 14 13 10 16 16 C 1.47646 * 119.99791 * 6.09751 * 14 13 10 17 17 C 1.40014 * 119.89348 * 215.61997 * 16 14 13 18 18 C 1.36314 * 120.10520 * 180.02562 * 17 16 14 19 19 C 1.40888 * 119.89340 * 359.97438 * 18 17 16 20 20 C 1.41116 * 120.10496 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99821 * 210.28126 * 20 19 18 22 22 C 1.40223 * 119.99695 * 30.28150 * 20 19 18 23 23 N 1.30639 * 120.00301 * 24.22048 * 22 20 19 24 24 Si 1.86804 * 119.99525 * 204.21599 * 22 20 19 25 25 H 1.48507 * 109.47023 * 60.00266 * 24 22 20 26 26 H 1.48499 * 109.47292 * 300.00027 * 24 22 20 27 27 H 1.48503 * 109.46856 * 180.02562 * 24 22 20 28 28 C 1.40886 * 119.79244 * 0.25323 * 19 18 17 29 29 C 1.36323 * 119.89099 * 359.50892 * 28 19 18 30 30 H 1.08992 * 109.47312 * 301.47152 * 1 2 3 31 31 H 1.09007 * 109.46842 * 61.47134 * 1 2 3 32 32 H 1.08993 * 109.47675 * 181.46593 * 1 2 3 33 33 H 1.08996 * 109.56617 * 65.67391 * 4 2 1 34 34 H 1.09000 * 109.38520 * 305.63687 * 4 2 1 35 35 H 1.08996 * 109.46110 * 301.22265 * 5 4 2 36 36 H 0.96698 * 117.00212 * 179.97438 * 8 6 5 37 37 H 1.09002 * 109.49656 * 178.68170 * 9 5 4 38 38 H 1.08999 * 109.49317 * 58.58378 * 9 5 4 39 39 H 1.09002 * 109.46880 * 179.36244 * 12 10 9 40 40 H 1.08998 * 109.47622 * 299.36672 * 12 10 9 41 41 H 1.08998 * 109.47173 * 59.36490 * 12 10 9 42 42 H 1.07995 * 119.94742 * 359.97261 * 17 16 14 43 43 H 1.08000 * 120.05710 * 180.02562 * 18 17 16 44 44 H 0.97000 * 120.00257 * 6.07734 * 23 22 20 45 45 H 1.08003 * 120.05558 * 179.72502 * 28 19 18 46 46 H 1.07996 * 119.94592 * 180.24996 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8463 -1.1726 6 6 4.0720 -1.5315 -2.4149 7 8 4.6819 -2.5706 -2.3253 8 8 3.8469 -0.9874 -3.6211 9 6 3.9522 -1.6688 0.0583 10 6 3.4643 -0.9520 1.3212 11 1 3.6502 -1.5799 2.1926 12 6 4.2058 0.3770 1.4790 13 7 2.0225 -0.6995 1.1945 14 6 1.1672 -1.1069 2.1532 15 8 -0.0318 -0.9920 1.9870 16 6 1.6862 -1.6925 3.4052 17 6 0.9871 -2.7311 4.0321 18 6 1.4621 -3.2747 5.1884 19 6 2.6588 -2.7901 5.7523 20 6 3.1543 -3.3492 6.9496 21 1 3.7270 -2.7402 7.6334 22 6 2.9030 -4.6953 7.2513 23 7 2.6518 -5.5442 6.2906 24 14 2.9278 -5.2747 9.0270 25 1 1.9003 -4.5352 9.8034 26 1 4.2687 -5.0201 9.6122 27 1 2.6346 -6.7297 9.0770 28 6 3.3562 -1.7417 5.1204 29 6 2.8759 -1.2077 3.9617 30 1 -0.3633 0.5365 0.8764 31 1 -0.3633 0.4908 -0.9030 32 1 -0.3634 -1.0272 0.0263 33 1 1.7633 -0.1568 -2.1350 34 1 1.5963 -1.7170 -1.2942 35 1 4.0057 0.1473 -1.0995 36 1 4.1925 -1.4631 -4.3888 37 1 5.0362 -1.7763 0.0968 38 1 3.4903 -2.6542 -0.0021 39 1 3.8477 0.8889 2.3722 40 1 5.2751 0.1876 1.5728 41 1 4.0227 1.0013 0.6045 42 1 0.0696 -3.1016 3.5993 43 1 0.9224 -4.0760 5.6711 44 1 2.7254 -5.2646 5.3647 45 1 4.2716 -1.3640 5.5514 46 1 3.4119 -0.4067 3.4744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594206192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:13 Heat of formation + Delta-G solvation = -120.882041 kcal Electronic energy + Delta-G solvation = -29252.949688 eV Core-core repulsion = 25299.417415 eV Total energy + Delta-G solvation = -3953.532272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14965 -41.12774 -39.47462 -38.47306 -37.12392 -36.08539 -34.58161 -34.02909 -31.92417 -31.28398 -30.23318 -27.67552 -27.38166 -26.13378 -24.07839 -23.59765 -22.79686 -22.33424 -21.33380 -19.96867 -19.75744 -19.06856 -17.92099 -17.71044 -17.11435 -16.85987 -16.69977 -16.12649 -15.96308 -15.71604 -15.48507 -15.21952 -14.78905 -14.68349 -14.39438 -14.19726 -14.04754 -13.89218 -13.68897 -13.58983 -13.25977 -13.09278 -12.93316 -12.78725 -12.68342 -12.55272 -12.50426 -12.42407 -12.02702 -11.99353 -11.79578 -11.56075 -11.53010 -11.49849 -11.45338 -10.94440 -10.02204 -9.77194 -9.59911 -9.45328 -9.24501 -6.58041 0.43623 0.93619 1.15734 1.50525 1.55147 1.79632 1.95802 2.01708 2.15573 2.30234 2.68517 3.43127 3.47931 3.52803 3.76835 3.88546 3.99741 4.08429 4.16796 4.24312 4.30484 4.34158 4.38712 4.47886 4.57873 4.65101 4.74564 4.82728 4.83386 4.92322 4.93989 5.00619 5.03751 5.05100 5.07365 5.19426 5.33441 5.40298 5.44739 5.57601 5.59938 5.68027 5.71002 5.80402 5.87099 6.13116 6.24385 6.50129 6.66179 6.81893 6.97329 7.37600 7.94126 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.003122 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.526052 B = 8967.883447 C = 9624.372355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.143 3.857 3 H 0.102 0.898 4 C -0.113 4.113 5 C -0.074 4.074 6 C 0.490 3.510 7 O -0.552 6.552 8 O -0.506 6.506 9 C -0.109 4.109 10 C 0.119 3.881 11 H 0.096 0.904 12 C -0.165 4.165 13 N -0.602 5.602 14 C 0.574 3.426 15 O -0.581 6.581 16 C -0.286 4.286 17 C -0.037 4.037 18 C -0.241 4.241 19 C 0.088 3.912 20 C -0.537 4.537 21 H 0.085 0.915 22 C 0.004 3.996 23 N -0.805 5.805 24 Si 1.117 2.883 25 H -0.264 1.264 26 H -0.252 1.252 27 H -0.273 1.273 28 C -0.241 4.241 29 C -0.042 4.042 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.116 0.884 34 H 0.050 0.950 35 H 0.145 0.855 36 H 0.427 0.573 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.285 0.715 45 H 0.114 0.886 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 11.643 -15.008 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.042 3.958 3 H 0.120 0.880 4 C -0.152 4.152 5 C -0.093 4.093 6 C 0.334 3.666 7 O -0.443 6.443 8 O -0.320 6.320 9 C -0.147 4.147 10 C 0.017 3.983 11 H 0.113 0.887 12 C -0.222 4.222 13 N -0.335 5.335 14 C 0.367 3.633 15 O -0.464 6.464 16 C -0.291 4.291 17 C -0.056 4.056 18 C -0.260 4.260 19 C 0.084 3.916 20 C -0.564 4.564 21 H 0.103 0.897 22 C -0.214 4.214 23 N -0.426 5.426 24 Si 0.933 3.067 25 H -0.189 1.189 26 H -0.176 1.176 27 H -0.198 1.198 28 C -0.260 4.260 29 C -0.061 4.061 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.163 0.837 36 H 0.289 0.711 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.132 0.868 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.447 10.291 -13.873 17.837 hybrid contribution 0.165 0.267 -1.382 1.417 sum 4.612 10.558 -15.255 19.117 Atomic orbital electron populations 1.22025 0.93454 1.01865 1.01059 1.21326 0.95224 0.96265 0.83028 0.87999 1.21906 0.92045 1.01840 0.99388 1.21108 0.97838 1.02068 0.88250 1.23595 0.74994 0.82295 0.85709 1.90740 1.40448 1.25212 1.87889 1.84484 1.74538 1.55787 1.17145 1.21782 1.02587 0.97987 0.92392 1.21790 0.79019 0.98733 0.98799 0.88662 1.22274 1.01261 0.95491 1.03213 1.48120 1.07280 1.58088 1.20011 1.18411 0.85379 0.76253 0.83262 1.90720 1.16911 1.57797 1.80984 1.19266 1.02153 1.06951 1.00681 1.20438 0.96723 0.94440 0.94039 1.20725 0.98944 1.06303 1.00034 1.18123 0.90043 0.91686 0.91701 1.20990 1.31956 0.98733 1.04752 0.89686 1.28562 0.89515 0.93297 1.10058 1.70496 1.30272 1.38503 1.03371 0.83016 0.79395 0.76564 0.67737 1.18870 1.17555 1.19811 1.20960 1.02026 1.04384 0.98674 1.21097 0.92919 0.97519 0.94516 0.92990 0.91191 0.94249 0.86620 0.93069 0.83722 0.71131 0.88784 0.93426 0.92186 0.89207 0.89718 0.88935 0.89583 0.90304 0.86815 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 7.58 71.98 0.55 -2.86 16 2 C 0.14 3.22 3.07 44.83 0.14 3.36 16 3 H 0.10 1.72 7.52 -2.39 -0.02 1.70 16 4 C -0.11 -2.08 4.56 30.53 0.14 -1.94 16 5 C -0.07 -1.26 2.39 -11.51 -0.03 -1.29 16 6 C 0.49 9.24 7.63 71.24 0.54 9.78 16 7 O -0.55 -14.87 16.74 21.97 0.37 -14.50 16 8 O -0.51 -6.14 13.30 -51.39 -0.68 -6.82 16 9 C -0.11 -2.49 4.13 30.68 0.13 -2.37 16 10 C 0.12 2.97 2.30 44.98 0.10 3.08 16 11 H 0.10 2.96 4.50 -2.38 -0.01 2.95 16 12 C -0.16 -2.85 8.41 71.98 0.61 -2.24 16 13 N -0.60 -17.62 2.68 -775.69 -2.08 -19.70 16 14 C 0.57 22.70 7.28 86.73 0.63 23.33 16 15 O -0.58 -25.69 12.22 -4.00 -0.05 -25.73 16 16 C -0.29 -12.56 5.30 -19.93 -0.11 -12.67 16 17 C -0.04 -1.82 9.54 22.25 0.21 -1.61 16 18 C -0.24 -12.59 7.93 22.47 0.18 -12.41 16 19 C 0.09 4.51 5.19 -21.28 -0.11 4.40 16 20 C -0.54 -27.54 8.96 23.46 0.21 -27.33 16 21 H 0.09 4.15 7.96 -2.91 -0.02 4.12 16 22 C 0.00 0.18 4.93 85.35 0.42 0.60 16 23 N -0.80 -42.67 12.45 21.87 0.27 -42.40 16 24 Si 1.12 41.37 30.00 68.60 2.06 43.43 16 25 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 26 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 27 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 28 C -0.24 -10.86 9.73 22.47 0.22 -10.65 16 29 C -0.04 -1.70 7.28 22.25 0.16 -1.54 16 30 H 0.05 1.67 6.60 -2.39 -0.02 1.65 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.04 1.29 6.89 -2.39 -0.02 1.28 16 33 H 0.12 1.49 8.08 -2.39 -0.02 1.47 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.15 1.58 6.50 -2.39 -0.02 1.56 16 36 H 0.43 1.91 9.10 -74.06 -0.67 1.24 16 37 H 0.09 1.97 8.07 -2.39 -0.02 1.95 16 38 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 39 H 0.06 1.16 6.65 -2.39 -0.02 1.14 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.04 5.76 -2.39 -0.01 1.03 16 42 H 0.09 4.50 8.00 -2.91 -0.02 4.48 16 43 H 0.09 4.74 6.81 -2.91 -0.02 4.72 16 44 H 0.28 15.79 6.83 -92.71 -0.63 15.16 16 45 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 46 H 0.14 4.59 4.05 -2.91 -0.01 4.58 16 Total: -1.00 -69.29 358.84 4.37 -64.92 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.49 Total: 33.14 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 3.99 Total: -32.34 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -1.81 Total: -62.10 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.36 Total: -47.05 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.06 Total: 43.43 kcal Total: -69.29 4.37 -64.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594206192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.959 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds