Wall clock time and date at job start Tue Mar 31 2020 17:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.44755 * 2 1 4 4 C 1.53039 * 109.46122 * 240.03100 * 2 1 3 5 5 C 1.53193 * 109.31527 * 178.61497 * 4 2 1 6 6 N 1.46920 * 108.77375 * 54.63297 * 5 4 2 7 7 C 1.34781 * 120.62938 * 126.37116 * 6 5 4 8 8 O 1.21281 * 120.00187 * 174.33518 * 7 6 5 9 9 C 1.50703 * 119.99716 * 354.34044 * 7 6 5 10 10 C 1.50703 * 109.46699 * 179.97438 * 9 7 6 11 11 C 1.37634 * 120.13003 * 264.99566 * 10 9 7 12 12 C 1.38607 * 120.25057 * 180.02562 * 11 10 9 13 13 C 1.38659 * 120.50494 * 359.97438 * 12 11 10 14 14 C 1.37597 * 120.24268 * 0.02562 * 13 12 11 15 15 C 1.40701 * 120.12570 * 85.02281 * 10 9 7 16 16 C 1.41397 * 120.24739 * 359.97119 * 15 10 9 17 17 H 1.07996 * 119.99767 * 338.96673 * 16 15 10 18 18 C 1.39944 * 119.99781 * 158.95695 * 16 15 10 19 19 N 1.30816 * 120.00390 * 347.81029 * 18 16 15 20 20 Si 1.86804 * 119.99521 * 167.81091 * 18 16 15 21 21 H 1.48499 * 109.47371 * 94.61014 * 20 18 16 22 22 H 1.48505 * 109.46829 * 214.60612 * 20 18 16 23 23 H 1.48498 * 109.47010 * 334.60364 * 20 18 16 24 24 C 1.46922 * 118.74325 * 306.64754 * 6 5 4 25 25 H 1.08999 * 109.58722 * 293.56756 * 24 6 5 26 26 C 1.50703 * 109.59036 * 173.14285 * 24 6 5 27 27 O 1.20821 * 119.99884 * 308.26565 * 26 24 6 28 28 O 1.34226 * 119.99786 * 128.26168 * 26 24 6 29 29 C 1.52762 * 109.00862 * 53.30798 * 24 6 5 30 30 H 1.09009 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47584 * 299.96475 * 1 2 3 32 32 H 1.09002 * 109.47035 * 59.97238 * 1 2 3 33 33 H 1.09001 * 109.49551 * 58.66441 * 4 2 1 34 34 H 1.09000 * 109.52678 * 298.58371 * 4 2 1 35 35 H 1.08998 * 109.58323 * 294.84700 * 5 4 2 36 36 H 1.09000 * 109.58667 * 174.42361 * 5 4 2 37 37 H 1.08989 * 109.47281 * 59.99921 * 9 7 6 38 38 H 1.08999 * 109.46719 * 299.99286 * 9 7 6 39 39 H 1.08001 * 119.87450 * 0.02562 * 11 10 9 40 40 H 1.08004 * 119.74830 * 179.97438 * 12 11 10 41 41 H 1.07993 * 119.87710 * 179.72357 * 13 12 11 42 42 H 1.08001 * 120.12612 * 179.97438 * 14 13 12 43 43 H 0.96998 * 120.00296 * 180.02562 * 19 18 16 44 44 H 0.96704 * 117.00095 * 180.02562 * 28 26 24 45 45 H 1.08995 * 109.56427 * 185.55661 * 29 24 6 46 46 H 1.08997 * 109.38707 * 65.51752 * 29 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9614 -2.2578 0.0001 8 8 5.4412 -2.6429 1.0453 9 6 5.3644 -2.9074 -1.2986 10 6 6.3676 -3.9982 -1.0246 11 6 7.7156 -3.7364 -1.1180 12 6 8.6404 -4.7379 -0.8669 13 6 8.2203 -6.0127 -0.5189 14 6 6.8777 -6.2970 -0.4195 15 6 5.9297 -5.2882 -0.6727 16 6 4.5474 -5.5688 -0.5736 17 1 3.8421 -4.7640 -0.4285 18 6 4.0933 -6.8895 -0.6638 19 7 4.9018 -7.8326 -1.0738 20 14 2.3326 -7.3055 -0.1987 21 1 1.4833 -7.2958 -1.4168 22 1 2.2903 -8.6532 0.4235 23 1 1.8246 -6.2982 0.7670 24 6 3.5671 -0.6923 1.2642 25 1 3.9097 0.3369 1.3716 26 6 4.0752 -1.5196 2.4169 27 8 3.9266 -2.7186 2.4116 28 8 4.6930 -0.9244 3.4492 29 6 2.0399 -0.7208 1.2501 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5132 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6573 -0.2208 -2.1398 34 1 1.6978 -1.7557 -1.2388 35 1 3.9143 0.3408 -1.3674 36 1 3.9417 -1.2846 -2.0984 37 1 5.8105 -2.1607 -1.9553 38 1 4.4845 -3.3350 -1.7793 39 1 8.0540 -2.7470 -1.3879 40 1 9.6962 -4.5237 -0.9430 41 1 8.9496 -6.7865 -0.3299 42 1 6.5527 -7.2907 -0.1487 43 1 4.5870 -8.7479 -1.1366 44 1 5.0019 -1.4965 4.1651 45 1 1.6572 -0.2207 2.1398 46 1 1.6973 -1.7555 1.2387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594401848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:56 Heat of formation + Delta-G solvation = -100.745648 kcal Electronic energy + Delta-G solvation = -30016.516436 eV Core-core repulsion = 26063.857343 eV Total energy + Delta-G solvation = -3952.659093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86259 -38.79602 -37.91741 -36.95107 -35.51827 -33.84060 -33.57941 -32.17276 -31.13143 -29.32384 -28.50101 -26.69189 -25.09753 -24.67480 -23.41269 -21.63737 -20.81003 -20.61010 -19.64616 -18.50200 -17.75746 -17.09341 -16.76757 -15.96257 -15.80608 -15.44632 -15.01673 -14.89179 -14.39141 -14.22743 -14.05311 -13.86835 -13.53556 -13.36951 -13.10724 -12.82892 -12.75315 -12.53241 -12.03965 -11.98917 -11.66784 -11.51660 -11.45631 -11.26771 -11.23773 -10.96993 -10.91398 -10.83032 -10.78662 -10.61124 -10.58103 -10.28278 -9.88554 -9.47262 -9.25945 -9.08888 -8.86907 -8.41412 -7.23347 -7.21788 -6.60494 -4.26296 2.52663 2.84471 3.00504 3.10858 3.13746 3.19670 3.34925 3.38585 3.53332 4.00704 4.55143 4.59126 4.67047 4.75229 4.86700 5.06560 5.19591 5.33706 5.38301 5.43583 5.48724 5.54828 5.66130 5.67284 5.81447 5.83143 5.84599 5.96369 6.00587 6.05201 6.14931 6.26132 6.33951 6.46354 6.58782 6.64624 6.86799 6.99390 7.15171 7.42231 7.55497 7.64809 7.75728 8.01453 8.18714 8.24584 8.38300 8.40224 8.76128 8.83430 9.01693 9.11630 10.26820 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.010669 B = 0.005164 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.812629 B = 5420.332117 C = 6432.423447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.114 3.886 6 N -0.621 5.621 7 C 0.512 3.488 8 O -0.491 6.491 9 C -0.063 4.063 10 C -0.186 4.186 11 C -0.081 4.081 12 C -0.243 4.243 13 C -0.109 4.109 14 C -0.165 4.165 15 C 0.125 3.875 16 C -0.439 4.439 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.798 5.798 20 Si 0.904 3.096 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.260 1.260 24 C 0.163 3.837 25 H 0.093 0.907 26 C 0.477 3.523 27 O -0.466 6.466 28 O -0.527 6.527 29 C -0.121 4.121 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.132 0.868 43 H 0.278 0.722 44 H 0.408 0.592 45 H 0.078 0.922 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 15.602 0.313 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.174 4.174 5 C -0.008 4.008 6 N -0.361 5.361 7 C 0.302 3.698 8 O -0.363 6.363 9 C -0.103 4.103 10 C -0.188 4.188 11 C -0.100 4.100 12 C -0.262 4.262 13 C -0.127 4.127 14 C -0.185 4.185 15 C 0.123 3.877 16 C -0.469 4.469 17 H 0.092 0.908 18 C -0.144 4.144 19 N -0.424 5.424 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.184 1.184 24 C 0.057 3.943 25 H 0.111 0.889 26 C 0.317 3.683 27 O -0.350 6.350 28 O -0.340 6.340 29 C -0.160 4.160 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.266 0.734 45 H 0.097 0.903 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.053 14.991 0.519 17.025 hybrid contribution -0.529 -0.634 0.664 1.059 sum -8.581 14.357 1.183 16.768 Atomic orbital electron populations 1.21814 0.94617 1.02218 1.01700 1.21070 0.95975 0.99333 0.94162 0.90737 1.22066 0.95392 1.02101 0.97870 1.21722 0.94036 0.99172 0.85901 1.48219 1.45275 1.37884 1.04723 1.21383 0.77817 0.77617 0.93016 1.90766 1.52313 1.60508 1.32703 1.20254 1.00367 0.96545 0.93100 1.19017 0.91799 0.94807 1.13172 1.20248 0.92954 0.96395 1.00375 1.20285 0.96556 0.94652 1.14754 1.20708 0.95887 0.95210 1.00905 1.21679 0.91163 1.01222 1.04407 1.17361 0.93278 0.89968 0.87097 1.19539 0.92806 0.92459 1.42103 0.90804 1.25907 0.99684 0.96272 0.92495 1.69781 1.36418 1.02245 1.33984 0.86360 0.82444 0.78761 0.79612 1.19645 1.20085 1.18362 1.20305 0.94788 0.96744 0.82413 0.88874 1.22484 0.75842 0.87357 0.82647 1.90839 1.51714 1.15362 1.77041 1.84388 1.71052 1.46286 1.32237 1.21898 0.91959 1.03077 0.99033 0.92413 0.92633 0.92391 0.90422 0.90741 0.91429 0.88669 0.90711 0.88689 0.89974 0.89863 0.89730 0.85030 0.91136 0.73355 0.90350 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.09 -0.77 2.68 -90.58 -0.24 -1.01 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.14 -1.29 5.36 -26.61 -0.14 -1.43 16 5 C 0.11 1.25 6.35 -3.71 -0.02 1.23 16 6 N -0.62 -9.60 2.98 -166.79 -0.50 -10.10 16 7 C 0.51 10.46 6.98 -10.98 -0.08 10.39 16 8 O -0.49 -12.16 11.38 -19.97 -0.23 -12.39 16 9 C -0.06 -1.27 3.53 -29.03 -0.10 -1.38 16 10 C -0.19 -4.63 4.43 -103.91 -0.46 -5.09 16 11 C -0.08 -1.94 9.66 -39.67 -0.38 -2.33 16 12 C -0.24 -5.88 10.05 -39.29 -0.39 -6.28 16 13 C -0.11 -2.76 10.02 -39.66 -0.40 -3.16 16 14 C -0.17 -4.61 8.75 -38.87 -0.34 -4.95 16 15 C 0.13 3.49 5.63 -106.82 -0.60 2.89 16 16 C -0.44 -12.09 8.29 -37.74 -0.31 -12.40 16 17 H 0.07 2.02 6.49 -52.49 -0.34 1.67 16 18 C 0.07 1.90 5.29 -17.35 -0.09 1.81 16 19 N -0.80 -21.21 10.42 55.55 0.58 -20.63 16 20 Si 0.90 19.86 29.58 -169.99 -5.03 14.84 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.16 2.30 3.32 -68.97 -0.23 2.07 16 25 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 26 C 0.48 8.47 5.33 36.01 0.19 8.66 16 27 O -0.47 -10.60 14.68 -27.20 -0.40 -11.00 16 28 O -0.53 -7.79 13.42 -39.25 -0.53 -8.31 16 29 C -0.12 -1.40 4.61 -26.83 -0.12 -1.52 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 1.02 5.93 -51.93 -0.31 0.71 16 37 H 0.07 1.25 7.62 -51.94 -0.40 0.85 16 38 H 0.10 1.89 6.76 -51.93 -0.35 1.54 16 39 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.08 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.08 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.13 3.78 5.67 -52.49 -0.30 3.48 16 43 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 44 H 0.41 4.76 9.10 45.56 0.41 5.17 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -35.21 368.68 -9.84 -45.05 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.91 Total: 10.30 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -3.39 Total: -13.30 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.08 Total: -30.73 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.15 Total: -31.71 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.21 -9.84 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594401848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.697 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds