Wall clock time and date at job start Tue Mar 31 2020 17:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.45590 * 2 1 4 4 C 1.53035 * 109.46210 * 119.96193 * 2 1 3 5 5 C 1.52760 * 109.38108 * 181.26081 * 4 2 1 6 6 N 1.46921 * 109.00916 * 305.58483 * 5 4 2 7 7 C 1.34780 * 120.63446 * 233.58324 * 6 5 4 8 8 O 1.21276 * 120.00228 * 184.87636 * 7 6 5 9 9 C 1.50703 * 119.99710 * 4.87453 * 7 6 5 10 10 C 1.50694 * 109.46917 * 179.97438 * 9 7 6 11 11 C 1.37645 * 120.12723 * 264.99561 * 10 9 7 12 12 C 1.38615 * 120.24848 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.49866 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.25144 * 359.97438 * 13 12 11 15 15 C 1.40702 * 120.13230 * 85.25326 * 10 9 7 16 16 C 1.41396 * 120.23892 * 0.02562 * 15 10 9 17 17 H 1.08002 * 120.00568 * 335.76080 * 16 15 10 18 18 C 1.39950 * 119.99842 * 155.75940 * 16 15 10 19 19 N 1.30827 * 119.99685 * 342.68904 * 18 16 15 20 20 Si 1.86793 * 120.00245 * 162.69009 * 18 16 15 21 21 H 1.48500 * 109.47314 * 60.00128 * 20 18 16 22 22 H 1.48505 * 109.47428 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46968 * 299.99780 * 20 18 16 24 24 C 1.46924 * 118.73581 * 53.31458 * 6 5 4 25 25 H 1.08998 * 109.58978 * 66.42656 * 24 6 5 26 26 C 1.50708 * 109.58665 * 186.85152 * 24 6 5 27 27 O 1.20823 * 119.99807 * 49.87580 * 26 24 6 28 28 O 1.34231 * 119.99927 * 229.87267 * 26 24 6 29 29 C 1.53045 * 109.45736 * 240.03239 * 2 1 3 30 30 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47421 * 299.96656 * 1 2 3 32 32 H 1.08997 * 109.47703 * 59.97086 * 1 2 3 33 33 H 1.09001 * 109.49672 * 301.33999 * 4 2 1 34 34 H 1.08997 * 109.49731 * 61.40165 * 4 2 1 35 35 H 1.09008 * 109.50986 * 185.70638 * 5 4 2 36 36 H 1.08999 * 109.43357 * 65.43002 * 5 4 2 37 37 H 1.09000 * 109.47081 * 59.99437 * 9 7 6 38 38 H 1.09003 * 109.46825 * 299.99657 * 9 7 6 39 39 H 1.07993 * 119.87444 * 359.97438 * 11 10 9 40 40 H 1.07995 * 119.74840 * 180.02562 * 12 11 10 41 41 H 1.08006 * 119.86973 * 180.02562 * 13 12 11 42 42 H 1.07998 * 120.12588 * 179.97438 * 14 13 12 43 43 H 0.96999 * 120.00118 * 180.02562 * 19 18 16 44 44 H 0.96698 * 116.99291 * 179.97438 * 28 26 24 45 45 H 1.08995 * 109.50044 * 58.66121 * 29 2 1 46 46 H 1.08998 * 109.52289 * 298.57953 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5671 -0.6921 1.2641 6 7 4.0678 -1.2487 0.0000 7 6 4.9614 -2.2577 0.0000 8 8 5.4339 -2.6493 -1.0461 9 6 5.3736 -2.8992 1.2999 10 6 6.3738 -3.9924 1.0256 11 6 5.9536 -5.2967 0.8956 12 6 6.8715 -6.3041 0.6428 13 6 8.2211 -6.0115 0.5185 14 6 8.6638 -4.7149 0.6446 15 6 7.7416 -3.6846 0.9067 16 6 8.1856 -2.3493 1.0443 17 1 7.5068 -1.5318 0.8511 18 6 9.5048 -2.0868 1.4308 19 7 10.2234 -3.0286 1.9861 20 14 10.2397 -0.3920 1.1540 21 1 9.4417 0.6201 1.8917 22 1 11.6406 -0.3732 1.6464 23 1 10.2213 -0.0754 -0.2968 24 6 3.5713 -0.6886 -1.2643 25 1 3.9141 0.3409 -1.3675 26 6 4.0833 -1.5126 -2.4176 27 8 3.9646 -2.7148 -2.4007 28 8 4.6712 -0.9107 -3.4636 29 6 2.0398 -0.7208 -1.2501 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 1.6572 -0.2206 2.1398 34 1 1.6974 -1.7553 1.2387 35 1 3.9348 -1.2905 2.0978 36 1 3.9097 0.3371 1.3715 37 1 4.4971 -3.3236 1.7895 38 1 5.8243 -2.1482 1.9488 39 1 4.9049 -5.5359 0.9910 40 1 6.5329 -7.3246 0.5419 41 1 8.9275 -6.8044 0.3210 42 1 9.7155 -4.4893 0.5478 43 1 11.1376 -2.8466 2.2544 44 1 4.9839 -1.4810 -4.1792 45 1 1.6571 -0.2209 -2.1399 46 1 1.6978 -1.7557 -1.2388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594401850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:05 Heat of formation + Delta-G solvation = -100.305194 kcal Electronic energy + Delta-G solvation = -29773.189662 eV Core-core repulsion = 25820.549669 eV Total energy + Delta-G solvation = -3952.639993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89025 -38.82766 -37.94542 -36.97068 -35.56349 -33.85436 -33.58765 -32.18789 -31.15062 -29.39948 -28.53979 -26.70693 -25.11848 -24.70923 -23.41599 -21.66296 -20.87665 -20.64044 -19.66148 -18.50823 -17.81587 -17.11383 -16.82659 -15.96788 -15.84705 -15.36671 -15.09273 -14.97385 -14.44997 -14.26752 -14.10851 -13.87280 -13.54295 -13.39961 -13.12477 -12.85152 -12.79178 -12.53734 -12.07796 -12.03413 -11.67161 -11.56908 -11.50625 -11.32082 -11.26374 -11.09486 -10.96676 -10.88982 -10.80391 -10.63293 -10.61375 -10.35554 -9.95671 -9.43168 -9.31322 -9.10385 -8.82344 -8.39338 -7.26026 -7.23736 -6.70437 -4.29731 2.47434 2.84055 2.99232 3.07352 3.09446 3.11778 3.32743 3.40507 3.51127 3.95770 4.50460 4.54291 4.62182 4.69785 4.83932 5.05887 5.18015 5.30302 5.36278 5.40151 5.44869 5.51844 5.61020 5.67256 5.76545 5.79121 5.84786 5.88287 5.94611 6.03822 6.15340 6.19207 6.35226 6.45261 6.57379 6.64585 6.84708 6.94633 7.11813 7.35903 7.48450 7.63487 7.73610 7.99265 8.11623 8.19481 8.32818 8.36512 8.69313 8.84665 8.95914 9.06982 10.23254 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.004397 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.405262 B = 6365.986706 C = 6970.626246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.134 4.134 5 C 0.113 3.887 6 N -0.621 5.621 7 C 0.511 3.489 8 O -0.490 6.490 9 C -0.063 4.063 10 C -0.183 4.183 11 C -0.077 4.077 12 C -0.240 4.240 13 C -0.106 4.106 14 C -0.162 4.162 15 C 0.129 3.871 16 C -0.456 4.456 17 H 0.072 0.928 18 C 0.078 3.922 19 N -0.794 5.794 20 Si 0.902 3.098 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.265 1.265 24 C 0.160 3.840 25 H 0.096 0.904 26 C 0.482 3.518 27 O -0.475 6.475 28 O -0.524 6.524 29 C -0.118 4.118 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.280 0.720 44 H 0.409 0.591 45 H 0.078 0.922 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.004 9.427 -1.541 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.094 0.906 4 C -0.172 4.172 5 C -0.009 4.009 6 N -0.361 5.361 7 C 0.301 3.699 8 O -0.362 6.362 9 C -0.103 4.103 10 C -0.184 4.184 11 C -0.095 4.095 12 C -0.259 4.259 13 C -0.125 4.125 14 C -0.181 4.181 15 C 0.127 3.873 16 C -0.486 4.486 17 H 0.090 0.910 18 C -0.140 4.140 19 N -0.419 5.419 20 Si 0.727 3.273 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.189 1.189 24 C 0.055 3.945 25 H 0.113 0.887 26 C 0.322 3.678 27 O -0.359 6.359 28 O -0.336 6.336 29 C -0.156 4.156 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.091 0.909 44 H 0.267 0.733 45 H 0.097 0.903 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.644 9.038 -1.679 17.290 hybrid contribution 0.658 0.368 -0.552 0.935 sum -13.986 9.407 -2.231 17.002 Atomic orbital electron populations 1.21808 0.94615 1.02067 1.01788 1.21088 0.95922 0.99565 0.94145 0.90593 1.21979 0.95540 1.01739 0.97954 1.21645 0.93730 0.99673 0.85898 1.48181 1.45315 1.37936 1.04644 1.21357 0.77647 0.77946 0.92988 1.90796 1.51776 1.60985 1.32611 1.20248 0.98240 0.98211 0.93561 1.19035 0.93715 0.91805 1.13888 1.20284 0.96508 0.93057 0.99668 1.20293 0.93696 0.96859 1.15081 1.20667 0.94601 0.96222 1.00983 1.21296 0.99994 0.91810 1.05017 1.17314 0.89857 0.93182 0.86943 1.19422 0.95602 0.92844 1.40729 0.90977 1.25872 0.97015 0.98687 0.92383 1.69821 1.09704 1.34323 1.28095 0.86467 0.78269 0.82573 0.80004 1.19063 1.20326 1.18924 1.20416 0.94679 0.97025 0.82399 0.88656 1.22457 0.75498 0.87229 0.82619 1.90760 1.51807 1.15632 1.77682 1.84403 1.71846 1.46000 1.31354 1.21943 0.91851 1.02746 0.99071 0.92538 0.92366 0.92605 0.90363 0.91106 0.88610 0.91272 0.90717 0.88642 0.89868 0.89738 0.89654 0.86478 0.90936 0.73285 0.90344 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 2 C -0.09 -0.73 2.68 -90.58 -0.24 -0.97 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.17 5.34 -26.84 -0.14 -1.31 16 5 C 0.11 1.26 6.32 -3.94 -0.02 1.23 16 6 N -0.62 -9.62 2.98 -166.79 -0.50 -10.12 16 7 C 0.51 10.48 6.98 -10.98 -0.08 10.40 16 8 O -0.49 -12.17 11.26 -20.13 -0.23 -12.39 16 9 C -0.06 -1.28 3.53 -29.04 -0.10 -1.38 16 10 C -0.18 -4.55 4.43 -103.91 -0.46 -5.01 16 11 C -0.08 -1.87 9.66 -39.66 -0.38 -2.25 16 12 C -0.24 -5.85 10.05 -39.29 -0.39 -6.24 16 13 C -0.11 -2.69 10.02 -39.66 -0.40 -3.09 16 14 C -0.16 -4.45 8.70 -38.88 -0.34 -4.79 16 15 C 0.13 3.54 5.58 -106.83 -0.60 2.95 16 16 C -0.46 -12.19 8.18 -37.74 -0.31 -12.50 16 17 H 0.07 1.87 6.63 -52.49 -0.35 1.53 16 18 C 0.08 1.98 5.15 -17.34 -0.09 1.89 16 19 N -0.79 -20.71 10.93 55.55 0.61 -20.11 16 20 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 24 C 0.16 2.24 3.35 -68.75 -0.23 2.00 16 25 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 26 C 0.48 8.35 5.44 36.01 0.20 8.55 16 27 O -0.47 -10.15 14.51 -27.26 -0.40 -10.54 16 28 O -0.52 -7.77 13.42 -39.26 -0.53 -8.30 16 29 C -0.12 -1.25 4.63 -26.61 -0.12 -1.37 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.05 5.93 -51.92 -0.31 0.74 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.30 7.80 -51.93 -0.41 0.89 16 38 H 0.10 1.87 6.62 -51.93 -0.34 1.53 16 39 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.08 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 42 H 0.12 3.29 6.14 -52.49 -0.32 2.97 16 43 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 44 H 0.41 4.71 9.10 45.56 0.41 5.13 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -34.59 369.36 -9.82 -44.41 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.94 Total: 9.98 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -3.37 Total: -12.53 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.11 Total: -30.23 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.15 Total: -31.24 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.59 -9.82 -44.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594401850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.894 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds