Wall clock time and date at job start Tue Mar 31 2020 17:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.45590 * 2 1 4 4 C 1.53035 * 109.46210 * 119.96193 * 2 1 3 5 5 C 1.52760 * 109.38108 * 181.26081 * 4 2 1 6 6 N 1.46921 * 109.00916 * 305.58483 * 5 4 2 7 7 C 1.34780 * 120.63446 * 233.58324 * 6 5 4 8 8 O 1.21276 * 120.00228 * 184.87636 * 7 6 5 9 9 C 1.50703 * 119.99710 * 4.87453 * 7 6 5 10 10 C 1.50694 * 109.46917 * 179.97438 * 9 7 6 11 11 C 1.37645 * 120.12723 * 264.99561 * 10 9 7 12 12 C 1.38615 * 120.24848 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.49866 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.25144 * 359.97438 * 13 12 11 15 15 C 1.40702 * 120.13230 * 85.25326 * 10 9 7 16 16 C 1.41396 * 120.23892 * 0.02562 * 15 10 9 17 17 H 1.08002 * 120.00568 * 335.76080 * 16 15 10 18 18 C 1.39950 * 119.99842 * 155.75940 * 16 15 10 19 19 N 1.30827 * 119.99685 * 342.68904 * 18 16 15 20 20 Si 1.86793 * 120.00245 * 162.69009 * 18 16 15 21 21 H 1.48500 * 109.47314 * 60.00128 * 20 18 16 22 22 H 1.48505 * 109.47428 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46968 * 299.99780 * 20 18 16 24 24 C 1.46924 * 118.73581 * 53.31458 * 6 5 4 25 25 H 1.08998 * 109.58978 * 66.42656 * 24 6 5 26 26 C 1.50708 * 109.58665 * 186.85152 * 24 6 5 27 27 O 1.20823 * 119.99807 * 49.87580 * 26 24 6 28 28 O 1.34231 * 119.99927 * 229.87267 * 26 24 6 29 29 C 1.53045 * 109.45736 * 240.03239 * 2 1 3 30 30 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47421 * 299.96656 * 1 2 3 32 32 H 1.08997 * 109.47703 * 59.97086 * 1 2 3 33 33 H 1.09001 * 109.49672 * 301.33999 * 4 2 1 34 34 H 1.08997 * 109.49731 * 61.40165 * 4 2 1 35 35 H 1.09008 * 109.50986 * 185.70638 * 5 4 2 36 36 H 1.08999 * 109.43357 * 65.43002 * 5 4 2 37 37 H 1.09000 * 109.47081 * 59.99437 * 9 7 6 38 38 H 1.09003 * 109.46825 * 299.99657 * 9 7 6 39 39 H 1.07993 * 119.87444 * 359.97438 * 11 10 9 40 40 H 1.07995 * 119.74840 * 180.02562 * 12 11 10 41 41 H 1.08006 * 119.86973 * 180.02562 * 13 12 11 42 42 H 1.07998 * 120.12588 * 179.97438 * 14 13 12 43 43 H 0.96999 * 120.00118 * 180.02562 * 19 18 16 44 44 H 0.96698 * 116.99291 * 179.97438 * 28 26 24 45 45 H 1.08995 * 109.50044 * 58.66121 * 29 2 1 46 46 H 1.08998 * 109.52289 * 298.57953 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5671 -0.6921 1.2641 6 7 4.0678 -1.2487 0.0000 7 6 4.9614 -2.2577 0.0000 8 8 5.4339 -2.6493 -1.0461 9 6 5.3736 -2.8992 1.2999 10 6 6.3738 -3.9924 1.0256 11 6 5.9536 -5.2967 0.8956 12 6 6.8715 -6.3041 0.6428 13 6 8.2211 -6.0115 0.5185 14 6 8.6638 -4.7149 0.6446 15 6 7.7416 -3.6846 0.9067 16 6 8.1856 -2.3493 1.0443 17 1 7.5068 -1.5318 0.8511 18 6 9.5048 -2.0868 1.4308 19 7 10.2234 -3.0286 1.9861 20 14 10.2397 -0.3920 1.1540 21 1 9.4417 0.6201 1.8917 22 1 11.6406 -0.3732 1.6464 23 1 10.2213 -0.0754 -0.2968 24 6 3.5713 -0.6886 -1.2643 25 1 3.9141 0.3409 -1.3675 26 6 4.0833 -1.5126 -2.4176 27 8 3.9646 -2.7148 -2.4007 28 8 4.6712 -0.9107 -3.4636 29 6 2.0398 -0.7208 -1.2501 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 1.6572 -0.2206 2.1398 34 1 1.6974 -1.7553 1.2387 35 1 3.9348 -1.2905 2.0978 36 1 3.9097 0.3371 1.3715 37 1 4.4971 -3.3236 1.7895 38 1 5.8243 -2.1482 1.9488 39 1 4.9049 -5.5359 0.9910 40 1 6.5329 -7.3246 0.5419 41 1 8.9275 -6.8044 0.3210 42 1 9.7155 -4.4893 0.5478 43 1 11.1376 -2.8466 2.2544 44 1 4.9839 -1.4810 -4.1792 45 1 1.6571 -0.2209 -2.1399 46 1 1.6978 -1.7557 -1.2388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594401850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:04 Heat of formation + Delta-G solvation = -120.752836 kcal Electronic energy + Delta-G solvation = -29774.076339 eV Core-core repulsion = 25820.549669 eV Total energy + Delta-G solvation = -3953.526669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16834 -40.25216 -39.38643 -38.47336 -36.90179 -35.52410 -34.92805 -33.63492 -32.45961 -31.35528 -29.55585 -28.28519 -26.89290 -25.89928 -24.27687 -23.07557 -22.81337 -21.66558 -21.16194 -19.80571 -19.10341 -19.05077 -18.21415 -17.36680 -17.20265 -16.91484 -16.51171 -16.18679 -16.01544 -15.47411 -15.41292 -15.18902 -14.87527 -14.61634 -14.39793 -14.38373 -14.12070 -13.92537 -13.47498 -13.38054 -12.92514 -12.86865 -12.82969 -12.77344 -12.71098 -12.54574 -12.39177 -12.20498 -12.10566 -12.08072 -11.65570 -11.38215 -11.34867 -11.23961 -11.14900 -11.02499 -10.35356 -9.64334 -9.26107 -9.17716 -8.60946 -6.30050 0.96940 1.09765 1.26468 1.35079 1.45738 1.54127 1.75988 2.07290 2.18941 2.20690 2.76747 3.62604 3.73774 3.79158 3.88403 4.02187 4.08781 4.13215 4.31467 4.36098 4.40198 4.49364 4.57416 4.63626 4.67471 4.71800 4.74128 4.76316 4.91030 4.95800 4.98505 5.07587 5.14114 5.17483 5.22222 5.34954 5.42037 5.53219 5.54623 5.56014 5.74708 5.75385 6.01853 6.13881 6.19392 6.37049 6.39928 6.71449 6.97582 7.06211 7.09607 7.39194 8.35232 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.004397 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.405262 B = 6365.986706 C = 6970.626246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.095 0.905 4 C -0.128 4.128 5 C 0.102 3.898 6 N -0.613 5.613 7 C 0.506 3.494 8 O -0.544 6.544 9 C -0.059 4.059 10 C -0.189 4.189 11 C -0.091 4.091 12 C -0.246 4.246 13 C -0.116 4.116 14 C -0.196 4.196 15 C 0.099 3.901 16 C -0.481 4.481 17 H 0.071 0.929 18 C 0.037 3.963 19 N -0.823 5.823 20 Si 0.972 3.028 21 H -0.249 1.249 22 H -0.266 1.266 23 H -0.273 1.273 24 C 0.155 3.845 25 H 0.119 0.881 26 C 0.476 3.524 27 O -0.522 6.522 28 O -0.520 6.520 29 C -0.110 4.110 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.287 0.713 44 H 0.420 0.580 45 H 0.098 0.902 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.997 12.016 -0.655 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.113 0.887 4 C -0.166 4.166 5 C -0.019 4.019 6 N -0.352 5.352 7 C 0.296 3.704 8 O -0.420 6.420 9 C -0.099 4.099 10 C -0.191 4.191 11 C -0.109 4.109 12 C -0.266 4.266 13 C -0.134 4.134 14 C -0.216 4.216 15 C 0.096 3.904 16 C -0.510 4.510 17 H 0.089 0.911 18 C -0.177 4.177 19 N -0.449 5.449 20 Si 0.793 3.207 21 H -0.173 1.173 22 H -0.190 1.190 23 H -0.198 1.198 24 C 0.051 3.949 25 H 0.137 0.863 26 C 0.318 3.682 27 O -0.410 6.410 28 O -0.333 6.333 29 C -0.148 4.148 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.280 0.720 45 H 0.116 0.884 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.680 11.667 -0.766 20.370 hybrid contribution 1.219 -0.478 -0.862 1.567 sum -15.461 11.190 -1.628 19.155 Atomic orbital electron populations 1.21774 0.93302 1.01887 1.02948 1.21117 0.96877 0.99940 0.92280 0.88696 1.21969 0.93424 1.01568 0.99625 1.22043 0.95564 1.00574 0.83728 1.48175 1.43743 1.36347 1.06887 1.21265 0.78271 0.78916 0.91966 1.90777 1.54165 1.63049 1.34029 1.20220 0.98213 0.97283 0.94134 1.19529 0.93950 0.93510 1.12103 1.20677 0.97839 0.93050 0.99320 1.20667 0.93326 0.98377 1.14183 1.20929 0.95760 0.96040 1.00713 1.21324 0.99482 0.93217 1.07555 1.17706 0.91159 0.93715 0.87783 1.19580 0.96753 0.92667 1.41995 0.91075 1.26692 0.96889 1.02658 0.91508 1.69882 1.10218 1.36370 1.28460 0.85412 0.78100 0.77913 0.79305 1.17253 1.19036 1.19822 1.20806 0.96792 0.97029 0.80313 0.86304 1.23243 0.74490 0.87078 0.83356 1.90729 1.53804 1.17806 1.78643 1.84383 1.71328 1.46076 1.31496 1.21963 0.89107 1.02142 1.01590 0.93422 0.90858 0.91848 0.87334 0.92432 0.88647 0.88934 0.87893 0.88187 0.87469 0.87036 0.87701 0.88268 0.90265 0.72015 0.88350 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 71.98 0.66 -0.76 16 2 C -0.08 -1.06 2.68 -10.77 -0.03 -1.09 16 3 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 4 C -0.13 -1.78 5.34 30.53 0.16 -1.62 16 5 C 0.10 1.97 6.32 86.22 0.54 2.52 16 6 N -0.61 -18.17 2.98 -800.00 -2.38 -20.56 16 7 C 0.51 20.79 6.98 87.66 0.61 21.40 16 8 O -0.54 -27.78 11.26 21.54 0.24 -27.54 16 9 C -0.06 -2.39 3.53 29.10 0.10 -2.29 16 10 C -0.19 -9.59 4.43 -19.40 -0.09 -9.68 16 11 C -0.09 -4.42 9.66 22.22 0.21 -4.20 16 12 C -0.25 -12.03 10.05 22.46 0.23 -11.81 16 13 C -0.12 -6.02 10.02 22.22 0.22 -5.80 16 14 C -0.20 -11.26 8.70 22.73 0.20 -11.06 16 15 C 0.10 5.58 5.58 -21.29 -0.12 5.46 16 16 C -0.48 -26.34 8.18 23.46 0.19 -26.15 16 17 H 0.07 3.78 6.63 -2.91 -0.02 3.76 16 18 C 0.04 1.93 5.15 85.26 0.44 2.37 16 19 N -0.82 -44.07 10.93 21.83 0.24 -43.83 16 20 Si 0.97 39.16 29.59 68.60 2.03 41.19 16 21 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 C 0.15 4.09 3.35 44.23 0.15 4.23 16 25 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 26 C 0.48 16.57 5.44 71.24 0.39 16.96 16 27 O -0.52 -23.06 14.51 30.11 0.44 -22.63 16 28 O -0.52 -15.36 13.42 -51.42 -0.69 -16.05 16 29 C -0.11 -2.08 4.63 30.67 0.14 -1.94 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 1.86 5.93 -2.38 -0.01 1.85 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 3.46 7.80 -2.39 -0.02 3.44 16 38 H 0.10 3.90 6.62 -2.39 -0.02 3.88 16 39 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 41 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 42 H 0.10 5.90 6.14 -2.91 -0.02 5.88 16 43 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 44 H 0.42 9.91 9.10 -74.06 -0.67 9.23 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -79.21 369.36 4.22 -74.99 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: 0.33 Total: 37.87 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 4.02 Total: -23.45 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -2.14 Total: -64.39 kcal Atomic # 8 Polarization: -66.20 SS G_CDS: -0.01 Total: -66.21 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -79.21 4.22 -74.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594401850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.764 kcal (2) G-P(sol) polarization free energy of solvation -79.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds