Wall clock time and date at job start Tue Mar 31 2020 17:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.91545 * 2 1 4 4 C 1.55117 * 111.16516 * 236.06612 * 2 1 3 5 5 N 1.47423 * 104.94538 * 205.13243 * 4 2 1 6 6 C 1.34779 * 125.64930 * 204.04022 * 5 4 2 7 7 O 1.21284 * 119.99929 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99990 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47118 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47070 * 55.00260 * 9 8 6 11 11 C 1.50698 * 109.47200 * 295.00575 * 9 8 6 12 12 H 1.07998 * 119.99941 * 325.12321 * 11 9 8 13 13 C 1.37874 * 119.99990 * 145.12858 * 11 9 8 14 14 N 1.31517 * 120.00164 * 184.98713 * 13 11 9 15 15 Si 1.86799 * 120.00096 * 4.98227 * 13 11 9 16 16 H 1.48500 * 109.46812 * 84.73466 * 15 13 11 17 17 H 1.48507 * 109.47276 * 204.73122 * 15 13 11 18 18 H 1.48501 * 109.47167 * 324.73291 * 15 13 11 19 19 C 1.50701 * 109.47044 * 175.00323 * 9 8 6 20 20 C 1.38233 * 120.00024 * 64.69655 * 19 9 8 21 21 C 1.38234 * 120.00134 * 179.74436 * 20 19 9 22 22 C 1.38236 * 119.99668 * 0.54996 * 21 20 19 23 23 C 1.38238 * 120.00110 * 359.70006 * 22 21 20 24 24 C 1.38232 * 119.99828 * 244.96662 * 19 9 8 25 25 C 1.47020 * 108.70178 * 24.00443 * 5 4 2 26 26 C 1.54318 * 107.27084 * 358.93917 * 25 5 4 27 27 H 1.09001 * 110.72128 * 96.34951 * 26 25 5 28 28 C 1.50700 * 110.72255 * 219.43987 * 26 25 5 29 29 O 1.20830 * 119.99676 * 116.15798 * 28 26 25 30 30 O 1.34227 * 120.00521 * 296.16318 * 28 26 25 31 31 H 1.08992 * 109.47028 * 296.10421 * 1 2 3 32 32 H 1.09002 * 109.46697 * 56.10609 * 1 2 3 33 33 H 1.09004 * 109.46886 * 176.09993 * 1 2 3 34 34 H 1.09004 * 110.41713 * 86.20255 * 4 2 1 35 35 H 1.08999 * 110.30204 * 324.00037 * 4 2 1 36 36 H 1.08993 * 109.47235 * 300.00320 * 8 6 5 37 37 H 1.09001 * 109.46643 * 60.00575 * 8 6 5 38 38 H 0.96996 * 120.00480 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.00096 * 359.97438 * 20 19 9 40 40 H 1.07998 * 120.00229 * 180.27350 * 21 20 19 41 41 H 1.08004 * 120.00158 * 179.73147 * 22 21 20 42 42 H 1.07998 * 119.99983 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00159 * 0.02562 * 24 19 9 44 44 H 1.08999 * 109.88122 * 239.52248 * 25 5 4 45 45 H 1.08999 * 110.00856 * 118.43167 * 25 5 4 46 46 H 0.96698 * 117.00331 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2002 5 7 3.4299 -1.2474 -0.7703 6 6 4.4517 -1.5678 -1.5888 7 8 4.3076 -1.5057 -2.7915 8 6 5.7730 -2.0031 -1.0097 9 6 6.7525 -2.3063 -2.1454 10 1 6.8298 -1.4383 -2.8000 11 6 6.2546 -3.4888 -2.9358 12 1 5.7370 -4.2937 -2.4352 13 6 6.4600 -3.5432 -4.2981 14 7 5.9412 -4.5251 -5.0027 15 14 7.4750 -2.2222 -5.1431 16 1 8.9158 -2.5697 -5.0498 17 1 7.0791 -2.1317 -6.5716 18 1 7.2371 -0.9150 -4.4797 19 6 8.1083 -2.6227 -1.5684 20 6 8.2794 -3.7460 -0.7812 21 6 9.5242 -4.0391 -0.2563 22 6 10.5953 -3.2026 -0.5091 23 6 10.4230 -2.0764 -1.2921 24 6 9.1794 -1.7864 -1.8216 25 6 3.4672 -1.2780 0.6991 26 6 2.0862 -0.8078 1.2023 27 1 1.4451 -1.6612 1.4231 28 6 2.2327 0.0743 2.4154 29 8 1.8877 1.2312 2.3662 30 8 2.7465 -0.4252 3.5504 31 1 -0.3633 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8531 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1643 -0.1734 -2.0837 35 1 1.4554 -1.6696 -1.4051 36 1 6.1761 -1.2062 -0.3849 37 1 5.6277 -2.8994 -0.4067 38 1 6.0854 -4.5632 -5.9611 39 1 7.4414 -4.3968 -0.5794 40 1 9.6589 -4.9191 0.3551 41 1 11.5669 -3.4291 -0.0955 42 1 11.2599 -1.4231 -1.4899 43 1 9.0446 -0.9062 -2.4327 44 1 4.2434 -0.6056 1.0643 45 1 3.6625 -2.2926 1.0462 46 1 2.8211 0.1790 4.3017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599854527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:49 Heat of formation + Delta-G solvation = -102.613593 kcal Electronic energy + Delta-G solvation = -28649.093146 eV Core-core repulsion = 24696.353053 eV Total energy + Delta-G solvation = -3952.740093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94294 -39.47161 -38.58193 -37.29353 -36.33362 -34.10260 -32.89391 -31.64143 -30.46448 -30.22684 -29.13014 -26.94360 -25.38891 -24.54218 -22.65843 -22.07681 -21.80118 -20.23608 -19.81666 -18.63129 -18.28608 -17.39183 -16.94490 -16.61052 -16.10953 -15.74734 -15.38670 -14.96611 -14.60978 -14.24497 -14.11491 -13.84996 -13.57813 -13.48188 -13.08631 -12.90766 -12.69913 -12.59557 -12.50481 -12.32791 -12.20367 -11.87659 -11.83025 -11.78030 -11.37301 -11.27229 -11.14728 -10.91162 -10.80103 -10.78368 -10.51487 -10.37751 -9.87086 -9.60818 -9.10442 -9.01837 -8.44347 -8.31765 -8.24377 -7.83372 -5.97978 -3.94828 1.86697 2.07024 2.12627 2.65285 3.32197 3.39957 3.42304 3.46451 3.47459 3.98793 4.26829 4.50436 4.56563 4.64997 4.86508 5.04342 5.13674 5.19095 5.24410 5.42860 5.47515 5.49980 5.52335 5.54188 5.60325 5.66887 5.73170 5.89620 5.92535 5.93543 6.00854 6.05142 6.09153 6.19563 6.22181 6.31093 6.47278 6.62828 6.69233 6.82321 7.02297 7.12159 7.24407 7.57033 7.57754 7.71351 7.81822 7.90462 8.52970 8.90941 9.00788 9.66535 11.15213 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003803 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.256568 B = 7360.371312 C = 8945.808035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.097 0.903 4 C 0.111 3.889 5 N -0.635 5.635 6 C 0.533 3.467 7 O -0.491 6.491 8 C -0.110 4.110 9 C 0.045 3.955 10 H 0.058 0.942 11 C -0.486 4.486 12 H 0.071 0.929 13 C 0.087 3.913 14 N -0.898 5.898 15 Si 0.870 3.130 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.261 1.261 19 C -0.039 4.039 20 C -0.101 4.101 21 C -0.126 4.126 22 C -0.150 4.150 23 C -0.124 4.124 24 C -0.141 4.141 25 C 0.121 3.879 26 C -0.095 4.095 27 H 0.124 0.876 28 C 0.492 3.508 29 O -0.509 6.509 30 O -0.513 6.513 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.262 0.738 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.187 7.446 16.751 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.115 0.885 4 C -0.012 4.012 5 N -0.375 5.375 6 C 0.322 3.678 7 O -0.361 6.361 8 C -0.151 4.151 9 C 0.026 3.974 10 H 0.076 0.924 11 C -0.523 4.523 12 H 0.089 0.911 13 C -0.115 4.115 14 N -0.535 5.535 15 Si 0.698 3.302 16 H -0.202 1.202 17 H -0.218 1.218 18 H -0.187 1.187 19 C -0.040 4.040 20 C -0.119 4.119 21 C -0.144 4.144 22 C -0.168 4.168 23 C -0.142 4.142 24 C -0.159 4.159 25 C -0.003 4.003 26 C -0.115 4.115 27 H 0.142 0.858 28 C 0.333 3.667 29 O -0.397 6.397 30 O -0.325 6.325 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -5.315 7.409 15.429 17.922 hybrid contribution 0.630 0.899 0.030 1.098 sum -4.685 8.308 15.459 18.165 Atomic orbital electron populations 1.21703 0.93135 1.02376 1.02620 1.22420 0.96758 0.99878 0.91755 0.88451 1.22251 0.83891 0.98088 0.96941 1.48668 1.12843 1.70493 1.05485 1.20588 0.84443 0.76377 0.86379 1.90767 1.81986 1.49332 1.14041 1.21645 0.92518 1.00872 1.00018 1.18324 0.86773 0.99496 0.92824 0.92421 1.20577 1.35919 1.03824 0.91970 0.91061 1.24856 0.94540 0.94926 0.97189 1.69879 1.44294 1.32391 1.06956 0.86978 0.80745 0.83735 0.78738 1.20200 1.21768 1.18664 1.20777 0.97561 0.93092 0.92558 1.20970 0.96783 0.96892 0.97295 1.21064 0.93479 0.99083 1.00771 1.20868 0.98269 0.96315 1.01333 1.20963 0.96842 0.97661 0.98753 1.21083 0.93285 1.00045 1.01461 1.21689 0.94416 1.02134 0.82059 1.22223 0.99945 0.98938 0.90351 0.85820 1.23121 0.72774 0.86896 0.83867 1.90731 1.46163 1.18824 1.83955 1.84559 1.76405 1.48407 1.23104 0.92053 0.91599 0.92057 0.89960 0.91300 0.91429 0.89742 0.92831 0.86189 0.87136 0.87385 0.87332 0.87307 0.91311 0.89959 0.73055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.32 37.16 0.35 -0.82 16 2 C -0.09 -0.90 2.72 -88.36 -0.24 -1.15 16 3 H 0.10 1.11 7.44 -51.93 -0.39 0.73 16 4 C 0.11 1.45 6.39 -2.42 -0.02 1.44 16 5 N -0.64 -9.63 3.33 -170.39 -0.57 -10.20 16 6 C 0.53 10.59 7.60 -10.99 -0.08 10.50 16 7 O -0.49 -12.21 15.24 5.55 0.08 -12.12 16 8 C -0.11 -2.06 4.16 -27.88 -0.12 -2.18 16 9 C 0.05 1.03 1.21 -92.92 -0.11 0.92 16 10 H 0.06 1.43 4.70 -51.93 -0.24 1.18 16 11 C -0.49 -13.27 6.87 -34.44 -0.24 -13.51 16 12 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 13 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 14 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 15 Si 0.87 22.79 27.15 -169.99 -4.62 18.17 16 16 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 18 H -0.26 -6.62 6.06 56.52 0.34 -6.28 16 19 C -0.04 -0.82 4.55 -104.63 -0.48 -1.29 16 20 C -0.10 -1.94 8.87 -39.58 -0.35 -2.29 16 21 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 22 C -0.15 -2.41 10.05 -39.58 -0.40 -2.80 16 23 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 24 C -0.14 -2.74 9.43 -39.58 -0.37 -3.11 16 25 C 0.12 1.34 6.07 -3.07 -0.02 1.33 16 26 C -0.10 -0.87 2.91 -89.94 -0.26 -1.14 16 27 H 0.12 0.91 8.04 -51.93 -0.42 0.49 16 28 C 0.49 4.63 7.49 36.01 0.27 4.90 16 29 O -0.51 -6.20 16.49 -18.75 -0.31 -6.51 16 30 O -0.51 -3.60 13.42 -39.25 -0.53 -4.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 35 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.46 7.86 -51.93 -0.41 1.05 16 38 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 39 H 0.12 2.26 7.80 -52.48 -0.41 1.85 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.11 2.06 7.95 -52.49 -0.42 1.65 16 44 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.41 1.21 9.10 45.56 0.41 1.62 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -36.03 380.97 -8.48 -44.51 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.10 Total: 3.52 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.96 Total: -11.75 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.21 Total: -37.44 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.75 Total: -22.76 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.62 Total: 18.17 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.03 -8.48 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599854527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.101 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds