Wall clock time and date at job start Tue Mar 31 2020 17:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.91545 * 2 1 4 4 C 1.55117 * 111.16516 * 236.06612 * 2 1 3 5 5 N 1.47423 * 104.94538 * 205.13243 * 4 2 1 6 6 C 1.34779 * 125.64930 * 204.04022 * 5 4 2 7 7 O 1.21284 * 119.99929 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99990 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47118 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47070 * 55.00260 * 9 8 6 11 11 C 1.50698 * 109.47200 * 295.00575 * 9 8 6 12 12 H 1.07998 * 119.99941 * 325.12321 * 11 9 8 13 13 C 1.37874 * 119.99990 * 145.12858 * 11 9 8 14 14 N 1.31517 * 120.00164 * 184.98713 * 13 11 9 15 15 Si 1.86799 * 120.00096 * 4.98227 * 13 11 9 16 16 H 1.48500 * 109.46812 * 84.73466 * 15 13 11 17 17 H 1.48507 * 109.47276 * 204.73122 * 15 13 11 18 18 H 1.48501 * 109.47167 * 324.73291 * 15 13 11 19 19 C 1.50701 * 109.47044 * 175.00323 * 9 8 6 20 20 C 1.38233 * 120.00024 * 64.69655 * 19 9 8 21 21 C 1.38234 * 120.00134 * 179.74436 * 20 19 9 22 22 C 1.38236 * 119.99668 * 0.54996 * 21 20 19 23 23 C 1.38238 * 120.00110 * 359.70006 * 22 21 20 24 24 C 1.38232 * 119.99828 * 244.96662 * 19 9 8 25 25 C 1.47020 * 108.70178 * 24.00443 * 5 4 2 26 26 C 1.54318 * 107.27084 * 358.93917 * 25 5 4 27 27 H 1.09001 * 110.72128 * 96.34951 * 26 25 5 28 28 C 1.50700 * 110.72255 * 219.43987 * 26 25 5 29 29 O 1.20830 * 119.99676 * 116.15798 * 28 26 25 30 30 O 1.34227 * 120.00521 * 296.16318 * 28 26 25 31 31 H 1.08992 * 109.47028 * 296.10421 * 1 2 3 32 32 H 1.09002 * 109.46697 * 56.10609 * 1 2 3 33 33 H 1.09004 * 109.46886 * 176.09993 * 1 2 3 34 34 H 1.09004 * 110.41713 * 86.20255 * 4 2 1 35 35 H 1.08999 * 110.30204 * 324.00037 * 4 2 1 36 36 H 1.08993 * 109.47235 * 300.00320 * 8 6 5 37 37 H 1.09001 * 109.46643 * 60.00575 * 8 6 5 38 38 H 0.96996 * 120.00480 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.00096 * 359.97438 * 20 19 9 40 40 H 1.07998 * 120.00229 * 180.27350 * 21 20 19 41 41 H 1.08004 * 120.00158 * 179.73147 * 22 21 20 42 42 H 1.07998 * 119.99983 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00159 * 0.02562 * 24 19 9 44 44 H 1.08999 * 109.88122 * 239.52248 * 25 5 4 45 45 H 1.08999 * 110.00856 * 118.43167 * 25 5 4 46 46 H 0.96698 * 117.00331 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2002 5 7 3.4299 -1.2474 -0.7703 6 6 4.4517 -1.5678 -1.5888 7 8 4.3076 -1.5057 -2.7915 8 6 5.7730 -2.0031 -1.0097 9 6 6.7525 -2.3063 -2.1454 10 1 6.8298 -1.4383 -2.8000 11 6 6.2546 -3.4888 -2.9358 12 1 5.7370 -4.2937 -2.4352 13 6 6.4600 -3.5432 -4.2981 14 7 5.9412 -4.5251 -5.0027 15 14 7.4750 -2.2222 -5.1431 16 1 8.9158 -2.5697 -5.0498 17 1 7.0791 -2.1317 -6.5716 18 1 7.2371 -0.9150 -4.4797 19 6 8.1083 -2.6227 -1.5684 20 6 8.2794 -3.7460 -0.7812 21 6 9.5242 -4.0391 -0.2563 22 6 10.5953 -3.2026 -0.5091 23 6 10.4230 -2.0764 -1.2921 24 6 9.1794 -1.7864 -1.8216 25 6 3.4672 -1.2780 0.6991 26 6 2.0862 -0.8078 1.2023 27 1 1.4451 -1.6612 1.4231 28 6 2.2327 0.0743 2.4154 29 8 1.8877 1.2312 2.3662 30 8 2.7465 -0.4252 3.5504 31 1 -0.3633 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8531 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1643 -0.1734 -2.0837 35 1 1.4554 -1.6696 -1.4051 36 1 6.1761 -1.2062 -0.3849 37 1 5.6277 -2.8994 -0.4067 38 1 6.0854 -4.5632 -5.9611 39 1 7.4414 -4.3968 -0.5794 40 1 9.6589 -4.9191 0.3551 41 1 11.5669 -3.4291 -0.0955 42 1 11.2599 -1.4231 -1.4899 43 1 9.0446 -0.9062 -2.4327 44 1 4.2434 -0.6056 1.0643 45 1 3.6625 -2.2926 1.0462 46 1 2.8211 0.1790 4.3017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599854527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:49 Heat of formation + Delta-G solvation = -126.367137 kcal Electronic energy + Delta-G solvation = -28650.123177 eV Core-core repulsion = 24696.353053 eV Total energy + Delta-G solvation = -3953.770124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80577 -40.75232 -39.92547 -38.52224 -37.06976 -35.85606 -34.08154 -33.61008 -31.60331 -31.36809 -30.52915 -28.42816 -26.78301 -25.60447 -24.19015 -23.29179 -22.88938 -21.40591 -20.97839 -20.05181 -19.05181 -18.99302 -18.35315 -17.85208 -17.28126 -16.91631 -16.53907 -16.35684 -16.20110 -15.72767 -15.38323 -15.14272 -14.76987 -14.65576 -14.39471 -14.16122 -14.03814 -13.91543 -13.85565 -13.57023 -13.48684 -13.22109 -13.08952 -12.90216 -12.76265 -12.55670 -12.23624 -12.09871 -12.01033 -11.88554 -11.82309 -11.76233 -11.59434 -11.47293 -11.01788 -10.76891 -10.52000 -9.62911 -9.60876 -9.30919 -8.22173 -6.17894 0.67731 0.72868 1.12839 1.29012 1.32357 1.37997 1.82112 1.92954 2.20999 2.39117 3.08075 3.12932 3.22247 3.37637 3.87784 3.95611 4.04344 4.12260 4.22435 4.29169 4.31156 4.40275 4.42776 4.44429 4.48609 4.57094 4.60673 4.68692 4.78325 4.83090 4.86208 4.86960 4.99403 5.03460 5.18780 5.19973 5.29869 5.36003 5.40696 5.43943 5.61634 5.69485 5.76619 5.82650 6.02460 6.32805 6.36158 6.55329 6.80679 6.99430 7.40844 7.45482 8.95093 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003803 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.256568 B = 7360.371312 C = 8945.808035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 H 0.083 0.917 4 C 0.105 3.895 5 N -0.632 5.632 6 C 0.526 3.474 7 O -0.557 6.557 8 C -0.104 4.104 9 C 0.047 3.953 10 H 0.035 0.965 11 C -0.461 4.461 12 H 0.038 0.962 13 C 0.027 3.973 14 N -0.951 5.951 15 Si 0.918 3.082 16 H -0.265 1.265 17 H -0.299 1.299 18 H -0.254 1.254 19 C -0.063 4.063 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.140 4.140 23 C -0.123 4.123 24 C -0.158 4.158 25 C 0.114 3.886 26 C -0.088 4.088 27 H 0.150 0.850 28 C 0.502 3.498 29 O -0.540 6.540 30 O -0.506 6.506 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.258 0.742 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.105 0.895 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 8.003 20.236 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 H 0.102 0.898 4 C -0.017 4.017 5 N -0.368 5.368 6 C 0.316 3.684 7 O -0.433 6.433 8 C -0.144 4.144 9 C 0.028 3.972 10 H 0.053 0.947 11 C -0.499 4.499 12 H 0.056 0.944 13 C -0.170 4.170 14 N -0.593 5.593 15 Si 0.745 3.255 16 H -0.190 1.190 17 H -0.226 1.226 18 H -0.178 1.178 19 C -0.064 4.064 20 C -0.135 4.135 21 C -0.141 4.141 22 C -0.158 4.158 23 C -0.141 4.141 24 C -0.177 4.177 25 C -0.009 4.009 26 C -0.107 4.107 27 H 0.168 0.832 28 C 0.345 3.655 29 O -0.430 6.430 30 O -0.319 6.319 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.131 0.869 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -3.778 7.991 19.024 20.977 hybrid contribution 0.166 0.720 -0.818 1.102 sum -3.612 8.711 18.206 20.503 Atomic orbital electron populations 1.21684 0.91350 1.03368 1.02948 1.22281 0.98035 0.98624 0.90758 0.89818 1.22403 0.83140 0.98421 0.97761 1.48574 1.12512 1.68452 1.07279 1.20797 0.85693 0.75969 0.85941 1.90738 1.83246 1.52624 1.16705 1.21552 0.91321 1.02549 0.98963 1.18172 0.89252 0.96308 0.93510 0.94675 1.20787 1.33475 1.03758 0.91875 0.94387 1.25545 0.96313 0.96788 0.98346 1.70018 1.47440 1.34881 1.06940 0.86197 0.79942 0.82098 0.77287 1.18974 1.22565 1.17839 1.20488 0.96379 0.94787 0.94743 1.21022 0.98072 0.96454 0.97974 1.21419 0.92465 1.00052 1.00122 1.21350 0.99620 0.95053 0.99768 1.21331 0.96550 0.98385 0.97864 1.21206 0.94146 1.00159 1.02159 1.21965 0.96091 1.03606 0.79202 1.22195 0.99004 0.99516 0.89996 0.83215 1.22941 0.72172 0.86111 0.84314 1.90737 1.47652 1.20018 1.84556 1.84510 1.75467 1.48792 1.23150 0.91522 0.91502 0.90715 0.92086 0.90731 0.88246 0.88344 0.93301 0.86948 0.84089 0.83516 0.84279 0.87645 0.90430 0.88213 0.70774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.32 71.98 0.67 -1.35 16 2 C -0.08 -1.50 2.72 -9.33 -0.03 -1.52 16 3 H 0.08 1.88 7.44 -2.39 -0.02 1.86 16 4 C 0.11 2.78 6.39 86.93 0.56 3.33 16 5 N -0.63 -19.05 3.33 -811.39 -2.70 -21.75 16 6 C 0.53 21.42 7.60 87.66 0.67 22.09 16 7 O -0.56 -29.21 15.24 -3.04 -0.05 -29.25 16 8 C -0.10 -3.88 4.16 29.85 0.12 -3.76 16 9 C 0.05 2.17 1.21 -12.29 -0.01 2.16 16 10 H 0.04 1.78 4.70 -2.39 -0.01 1.77 16 11 C -0.46 -26.24 6.87 25.60 0.18 -26.07 16 12 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 13 C 0.03 1.62 5.47 84.65 0.46 2.09 16 14 N -0.95 -62.48 13.96 21.45 0.30 -62.18 16 15 Si 0.92 48.69 27.15 68.60 1.86 50.56 16 16 H -0.26 -13.33 7.11 99.48 0.71 -12.63 16 17 H -0.30 -15.99 7.11 99.48 0.71 -15.29 16 18 H -0.25 -12.96 6.06 99.48 0.60 -12.36 16 19 C -0.06 -2.59 4.55 -19.87 -0.09 -2.68 16 20 C -0.12 -4.32 8.87 22.27 0.20 -4.12 16 21 C -0.12 -3.68 10.05 22.27 0.22 -3.45 16 22 C -0.14 -3.85 10.05 22.27 0.22 -3.63 16 23 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 24 C -0.16 -5.90 9.43 22.27 0.21 -5.69 16 25 C 0.11 2.29 6.07 86.73 0.53 2.82 16 26 C -0.09 -1.40 2.91 -10.35 -0.03 -1.43 16 27 H 0.15 1.65 8.04 -2.39 -0.02 1.63 16 28 C 0.50 8.12 7.49 71.24 0.53 8.65 16 29 O -0.54 -12.11 16.49 21.95 0.36 -11.75 16 30 O -0.51 -5.39 13.42 -51.39 -0.69 -6.08 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.92 8.08 -2.38 -0.02 0.90 16 34 H 0.06 1.87 8.04 -2.38 -0.02 1.85 16 35 H 0.07 1.89 7.99 -2.39 -0.02 1.87 16 36 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.10 3.36 7.86 -2.39 -0.02 3.34 16 38 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 39 H 0.11 4.21 7.80 -2.91 -0.02 4.18 16 40 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 41 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 43 H 0.11 3.90 7.95 -2.91 -0.02 3.88 16 44 H 0.08 1.46 7.81 -2.39 -0.02 1.44 16 45 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.43 1.11 9.10 -74.06 -0.67 0.43 16 Total: -1.00 -83.66 380.97 3.93 -79.73 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.21 Total: 16.81 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.63 Total: -16.08 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -2.40 Total: -83.93 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -0.37 Total: -47.09 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.86 Total: 50.56 kcal Total: -83.66 3.93 -79.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599854527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.635 kcal (2) G-P(sol) polarization free energy of solvation -83.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds