Wall clock time and date at job start Tue Mar 31 2020 17:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.29882 * 2 1 4 4 C 1.54393 * 110.34034 * 122.17088 * 2 1 3 5 5 N 1.48140 * 104.61374 * 142.74200 * 4 2 1 6 6 C 1.34782 * 127.83730 * 140.43291 * 5 4 2 7 7 O 1.21283 * 119.99724 * 180.02562 * 6 5 4 8 8 C 1.50695 * 119.99781 * 0.02853 * 6 5 4 9 9 H 1.09001 * 109.46906 * 299.99155 * 8 6 5 10 10 C 1.50690 * 109.47573 * 59.99753 * 8 6 5 11 11 H 1.08004 * 120.00232 * 29.18671 * 10 8 6 12 12 C 1.37881 * 120.00277 * 209.18771 * 10 8 6 13 13 N 1.31515 * 119.99650 * 6.08873 * 12 10 8 14 14 Si 1.86801 * 120.00034 * 186.08761 * 12 10 8 15 15 H 1.48498 * 109.47348 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46696 * 120.00472 * 14 12 10 17 17 H 1.48500 * 109.46901 * 239.99964 * 14 12 10 18 18 C 1.50700 * 109.46882 * 179.97438 * 8 6 5 19 19 C 1.38234 * 120.00421 * 293.64388 * 18 8 6 20 20 C 1.38231 * 120.00397 * 179.78730 * 19 18 8 21 21 C 1.38236 * 120.00157 * 0.46308 * 20 19 18 22 22 C 1.38237 * 119.99747 * 359.77233 * 21 20 19 23 23 C 1.38238 * 119.99957 * 0.02562 * 22 21 20 24 24 C 1.48148 * 104.32603 * 320.41270 * 5 4 2 25 25 C 1.54281 * 110.34467 * 237.70868 * 2 1 3 26 26 C 1.52994 * 110.34255 * 0.02562 * 25 2 1 27 27 C 1.50699 * 110.33916 * 122.25702 * 25 2 1 28 28 O 1.20829 * 120.00321 * 0.02562 * 27 25 2 29 29 O 1.34229 * 120.00145 * 180.02562 * 27 25 2 30 30 H 1.08994 * 109.47506 * 299.27663 * 1 2 3 31 31 H 1.09005 * 109.46653 * 179.27814 * 1 2 3 32 32 H 1.08993 * 109.47057 * 59.28793 * 1 2 3 33 33 H 1.09000 * 110.40734 * 261.52339 * 4 2 1 34 34 H 1.08997 * 110.40715 * 23.84174 * 4 2 1 35 35 H 0.96998 * 119.99937 * 179.97438 * 13 12 10 36 36 H 1.08009 * 119.99536 * 0.02562 * 19 18 8 37 37 H 1.08002 * 120.00045 * 180.25376 * 20 19 18 38 38 H 1.07992 * 120.00153 * 179.78680 * 21 20 19 39 39 H 1.07992 * 120.00159 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.99939 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.40398 * 158.36833 * 24 5 4 42 42 H 1.08998 * 110.40903 * 280.68491 * 24 5 4 43 43 H 1.08995 * 109.47691 * 59.99749 * 26 25 2 44 44 H 1.09001 * 109.47021 * 180.02562 * 26 25 2 45 45 H 1.09002 * 109.46987 * 299.99588 * 26 25 2 46 46 H 0.96700 * 117.00668 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7708 1.2254 5 7 3.2664 -1.4808 0.7243 6 6 4.4424 -1.6651 1.3566 7 8 5.3368 -2.2736 0.8082 8 6 4.6456 -1.1153 2.7448 9 1 4.5225 -0.0324 2.7283 10 6 3.6309 -1.7221 3.6791 11 1 3.2449 -2.7125 3.4877 12 6 3.1952 -1.0131 4.7784 13 7 3.5721 0.2356 4.9471 14 14 2.0695 -1.8260 6.0280 15 1 1.7955 -3.2247 5.6113 16 1 2.7268 -1.8263 7.3597 17 1 0.7919 -1.0731 6.1068 18 6 6.0339 -1.4562 3.2218 19 6 6.3817 -2.7742 3.4516 20 6 7.6564 -3.0873 3.8849 21 6 8.5807 -2.0816 4.0976 22 6 8.2315 -0.7631 3.8724 23 6 6.9579 -0.4504 3.4351 24 6 2.8802 -1.9428 -0.6293 25 6 2.0664 -0.7728 -1.2228 26 6 0.9063 -1.3051 -2.0663 27 6 2.9556 0.1150 -2.0547 28 8 3.1534 1.2584 -1.7176 29 8 3.5280 -0.3642 -3.1703 30 1 -0.3634 0.5025 0.8963 31 1 -0.3633 -1.0277 -0.0129 32 1 -0.3633 0.5248 -0.8835 33 1 2.3400 -0.0774 2.0207 34 1 1.3227 -1.4830 1.5821 35 1 3.2653 0.7345 5.7203 36 1 5.6584 -3.5597 3.2889 37 1 7.9293 -4.1174 4.0605 38 1 9.5755 -2.3259 4.4394 39 1 8.9536 0.0226 4.0382 40 1 6.6850 0.5797 3.2596 41 1 3.7674 -2.1336 -1.2332 42 1 2.2658 -2.8407 -0.5636 43 1 0.2961 -0.4710 -2.4127 44 1 1.3008 -1.8483 -2.9251 45 1 0.2955 -1.9758 -1.4620 46 1 4.0905 0.2426 -3.6708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599911588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:44 Heat of formation + Delta-G solvation = -102.464460 kcal Electronic energy + Delta-G solvation = -29725.850798 eV Core-core repulsion = 25773.117172 eV Total energy + Delta-G solvation = -3952.733626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92913 -39.22180 -38.21663 -37.07199 -36.03784 -33.75302 -33.01549 -31.16041 -30.92886 -29.92342 -27.88949 -26.47857 -25.55117 -24.60875 -23.52240 -22.02317 -21.57440 -20.63382 -18.88847 -18.44092 -17.78585 -17.03735 -16.72710 -15.98721 -15.80347 -15.71919 -15.06578 -14.70912 -14.44643 -14.24014 -13.96170 -13.82882 -13.74576 -13.14355 -12.92857 -12.56653 -12.41239 -12.28038 -12.07885 -12.03847 -11.98795 -11.64910 -11.56251 -11.49309 -11.32396 -11.09366 -11.01382 -10.98670 -10.63902 -10.38842 -10.35090 -10.33104 -10.25259 -9.99149 -9.44129 -8.78068 -8.62228 -8.09074 -7.93145 -7.60825 -6.27473 -4.32225 2.24356 2.38768 2.41150 2.99430 3.17436 3.27491 3.29830 3.62481 3.69010 4.27418 4.37031 4.62332 4.82772 4.87360 5.08628 5.18519 5.23366 5.40855 5.48168 5.54040 5.66240 5.73266 5.77256 5.80732 5.83221 5.90569 5.93519 5.95898 6.08968 6.15554 6.23352 6.25872 6.45120 6.49978 6.51779 6.59796 6.61188 6.87055 6.89514 7.02266 7.18876 7.38218 7.45911 7.62632 7.76304 7.91311 7.96554 8.06205 8.31665 8.69390 9.14021 9.32027 10.81077 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.004987 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.461435 B = 5613.133309 C = 7206.726391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.101 0.899 4 C 0.121 3.879 5 N -0.619 5.619 6 C 0.551 3.449 7 O -0.564 6.564 8 C 0.056 3.944 9 H 0.088 0.912 10 C -0.511 4.511 11 H 0.062 0.938 12 C 0.076 3.924 13 N -0.876 5.876 14 Si 0.893 3.107 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.281 1.281 18 C -0.012 4.012 19 C -0.084 4.084 20 C -0.135 4.135 21 C -0.148 4.148 22 C -0.132 4.132 23 C -0.117 4.117 24 C 0.117 3.883 25 C -0.065 4.065 26 C -0.136 4.136 27 C 0.493 3.507 28 O -0.508 6.508 29 O -0.514 6.514 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.266 0.734 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -0.987 -10.651 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.120 0.880 4 C -0.002 4.002 5 N -0.353 5.353 6 C 0.344 3.656 7 O -0.443 6.443 8 C 0.035 3.965 9 H 0.106 0.894 10 C -0.548 4.548 11 H 0.080 0.920 12 C -0.129 4.129 13 N -0.512 5.512 14 Si 0.720 3.280 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.013 4.013 19 C -0.102 4.102 20 C -0.153 4.153 21 C -0.166 4.166 22 C -0.150 4.150 23 C -0.135 4.135 24 C -0.007 4.007 25 C -0.068 4.068 26 C -0.193 4.193 27 C 0.335 3.665 28 O -0.395 6.395 29 O -0.326 6.326 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -4.553 -1.119 -10.415 11.422 hybrid contribution -0.181 0.117 0.503 0.547 sum -4.733 -1.002 -9.912 11.030 Atomic orbital electron populations 1.21898 0.93726 1.02161 1.02080 1.22409 0.96363 1.01285 0.92388 0.88035 1.22399 0.86568 0.95790 0.95471 1.48839 1.14060 1.56830 1.15578 1.21445 0.78458 0.77753 0.87988 1.90596 1.41694 1.43349 1.68667 1.18075 0.91096 1.00094 0.87204 0.89384 1.20645 1.23022 1.02339 1.08827 0.91971 1.24916 0.95788 0.94506 0.97657 1.69902 1.44194 1.08232 1.28889 0.86504 0.80164 0.79812 0.81480 1.19512 1.20734 1.20730 1.20036 0.94585 0.92523 0.94143 1.20824 0.95133 0.96610 0.97650 1.20950 0.94377 0.98142 1.01839 1.20798 0.98734 0.93323 1.03773 1.20898 0.96512 0.95887 1.01726 1.20993 0.92969 0.98982 1.00588 1.22189 0.98744 0.94188 0.85589 1.21484 0.94783 0.95819 0.94667 1.21914 0.96187 1.01639 0.99556 1.23226 0.77884 0.86785 0.78650 1.90693 1.59317 1.19978 1.69503 1.84517 1.61377 1.49142 1.37554 0.91769 0.91939 0.92483 0.87772 0.91124 0.92370 0.87089 0.87587 0.87713 0.87562 0.87044 0.89774 0.90207 0.91559 0.91428 0.90267 0.73425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 7.93 37.16 0.29 -1.20 16 2 C -0.11 -1.47 3.24 -89.22 -0.29 -1.76 16 3 H 0.10 1.63 6.47 -51.93 -0.34 1.30 16 4 C 0.12 2.06 5.60 -2.41 -0.01 2.04 16 5 N -0.62 -11.88 3.30 -169.31 -0.56 -12.44 16 6 C 0.55 12.66 7.16 -10.99 -0.08 12.58 16 7 O -0.56 -14.16 15.70 5.55 0.09 -14.07 16 8 C 0.06 1.35 1.71 -94.08 -0.16 1.19 16 9 H 0.09 2.28 6.95 -51.93 -0.36 1.91 16 10 C -0.51 -12.55 6.09 -34.44 -0.21 -12.76 16 11 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 12 C 0.08 1.89 5.45 -17.82 -0.10 1.80 16 13 N -0.88 -22.73 12.85 55.43 0.71 -22.02 16 14 Si 0.89 19.64 29.54 -169.99 -5.02 14.62 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 18 C -0.01 -0.28 4.30 -104.62 -0.45 -0.73 16 19 C -0.08 -1.92 8.32 -39.59 -0.33 -2.25 16 20 C -0.13 -2.71 10.05 -39.58 -0.40 -3.11 16 21 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 22 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 23 C -0.12 -2.63 9.67 -39.58 -0.38 -3.02 16 24 C 0.12 1.80 6.13 -2.41 -0.01 1.79 16 25 C -0.07 -0.86 0.97 -154.27 -0.15 -1.01 16 26 C -0.14 -1.27 7.21 37.15 0.27 -1.00 16 27 C 0.49 7.11 6.90 36.00 0.25 7.36 16 28 O -0.51 -8.86 16.02 -18.75 -0.30 -9.16 16 29 O -0.51 -5.91 13.13 -39.26 -0.52 -6.43 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.58 6.61 -51.93 -0.34 0.24 16 32 H 0.06 0.53 6.98 -51.93 -0.36 0.17 16 33 H 0.10 2.07 6.91 -51.93 -0.36 1.71 16 34 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 35 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.11 2.56 7.88 -52.48 -0.41 2.14 16 37 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.11 2.44 7.96 -52.49 -0.42 2.03 16 41 H 0.08 1.40 7.47 -51.93 -0.39 1.01 16 42 H 0.08 1.07 7.84 -51.93 -0.41 0.66 16 43 H 0.07 0.56 6.89 -51.93 -0.36 0.20 16 44 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 45 H 0.08 0.64 6.68 -51.93 -0.35 0.30 16 46 H 0.41 3.01 9.10 45.56 0.41 3.43 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -31.37 374.80 -8.25 -39.62 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.74 Total: 10.54 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.56 Total: -6.31 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.15 Total: -34.46 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.73 Total: -29.66 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.37 -8.25 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599911588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.848 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds