Wall clock time and date at job start Tue Mar 31 2020 17:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.29882 * 2 1 4 4 C 1.54393 * 110.34034 * 122.17088 * 2 1 3 5 5 N 1.48140 * 104.61374 * 142.74200 * 4 2 1 6 6 C 1.34782 * 127.83730 * 140.43291 * 5 4 2 7 7 O 1.21283 * 119.99724 * 180.02562 * 6 5 4 8 8 C 1.50695 * 119.99781 * 0.02853 * 6 5 4 9 9 H 1.09001 * 109.46906 * 299.99155 * 8 6 5 10 10 C 1.50690 * 109.47573 * 59.99753 * 8 6 5 11 11 H 1.08004 * 120.00232 * 29.18671 * 10 8 6 12 12 C 1.37881 * 120.00277 * 209.18771 * 10 8 6 13 13 N 1.31515 * 119.99650 * 6.08873 * 12 10 8 14 14 Si 1.86801 * 120.00034 * 186.08761 * 12 10 8 15 15 H 1.48498 * 109.47348 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46696 * 120.00472 * 14 12 10 17 17 H 1.48500 * 109.46901 * 239.99964 * 14 12 10 18 18 C 1.50700 * 109.46882 * 179.97438 * 8 6 5 19 19 C 1.38234 * 120.00421 * 293.64388 * 18 8 6 20 20 C 1.38231 * 120.00397 * 179.78730 * 19 18 8 21 21 C 1.38236 * 120.00157 * 0.46308 * 20 19 18 22 22 C 1.38237 * 119.99747 * 359.77233 * 21 20 19 23 23 C 1.38238 * 119.99957 * 0.02562 * 22 21 20 24 24 C 1.48148 * 104.32603 * 320.41270 * 5 4 2 25 25 C 1.54281 * 110.34467 * 237.70868 * 2 1 3 26 26 C 1.52994 * 110.34255 * 0.02562 * 25 2 1 27 27 C 1.50699 * 110.33916 * 122.25702 * 25 2 1 28 28 O 1.20829 * 120.00321 * 0.02562 * 27 25 2 29 29 O 1.34229 * 120.00145 * 180.02562 * 27 25 2 30 30 H 1.08994 * 109.47506 * 299.27663 * 1 2 3 31 31 H 1.09005 * 109.46653 * 179.27814 * 1 2 3 32 32 H 1.08993 * 109.47057 * 59.28793 * 1 2 3 33 33 H 1.09000 * 110.40734 * 261.52339 * 4 2 1 34 34 H 1.08997 * 110.40715 * 23.84174 * 4 2 1 35 35 H 0.96998 * 119.99937 * 179.97438 * 13 12 10 36 36 H 1.08009 * 119.99536 * 0.02562 * 19 18 8 37 37 H 1.08002 * 120.00045 * 180.25376 * 20 19 18 38 38 H 1.07992 * 120.00153 * 179.78680 * 21 20 19 39 39 H 1.07992 * 120.00159 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.99939 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.40398 * 158.36833 * 24 5 4 42 42 H 1.08998 * 110.40903 * 280.68491 * 24 5 4 43 43 H 1.08995 * 109.47691 * 59.99749 * 26 25 2 44 44 H 1.09001 * 109.47021 * 180.02562 * 26 25 2 45 45 H 1.09002 * 109.46987 * 299.99588 * 26 25 2 46 46 H 0.96700 * 117.00668 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7708 1.2254 5 7 3.2664 -1.4808 0.7243 6 6 4.4424 -1.6651 1.3566 7 8 5.3368 -2.2736 0.8082 8 6 4.6456 -1.1153 2.7448 9 1 4.5225 -0.0324 2.7283 10 6 3.6309 -1.7221 3.6791 11 1 3.2449 -2.7125 3.4877 12 6 3.1952 -1.0131 4.7784 13 7 3.5721 0.2356 4.9471 14 14 2.0695 -1.8260 6.0280 15 1 1.7955 -3.2247 5.6113 16 1 2.7268 -1.8263 7.3597 17 1 0.7919 -1.0731 6.1068 18 6 6.0339 -1.4562 3.2218 19 6 6.3817 -2.7742 3.4516 20 6 7.6564 -3.0873 3.8849 21 6 8.5807 -2.0816 4.0976 22 6 8.2315 -0.7631 3.8724 23 6 6.9579 -0.4504 3.4351 24 6 2.8802 -1.9428 -0.6293 25 6 2.0664 -0.7728 -1.2228 26 6 0.9063 -1.3051 -2.0663 27 6 2.9556 0.1150 -2.0547 28 8 3.1534 1.2584 -1.7176 29 8 3.5280 -0.3642 -3.1703 30 1 -0.3634 0.5025 0.8963 31 1 -0.3633 -1.0277 -0.0129 32 1 -0.3633 0.5248 -0.8835 33 1 2.3400 -0.0774 2.0207 34 1 1.3227 -1.4830 1.5821 35 1 3.2653 0.7345 5.7203 36 1 5.6584 -3.5597 3.2889 37 1 7.9293 -4.1174 4.0605 38 1 9.5755 -2.3259 4.4394 39 1 8.9536 0.0226 4.0382 40 1 6.6850 0.5797 3.2596 41 1 3.7674 -2.1336 -1.2332 42 1 2.2658 -2.8407 -0.5636 43 1 0.2961 -0.4710 -2.4127 44 1 1.3008 -1.8483 -2.9251 45 1 0.2955 -1.9758 -1.4620 46 1 4.0905 0.2426 -3.6708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599911588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:44 Heat of formation + Delta-G solvation = -121.251421 kcal Electronic energy + Delta-G solvation = -29726.665461 eV Core-core repulsion = 25773.117172 eV Total energy + Delta-G solvation = -3953.548290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13635 -40.79721 -39.67382 -38.60320 -37.17140 -35.59335 -34.40365 -32.88657 -32.10082 -31.57169 -29.49593 -27.78544 -26.72833 -26.04832 -25.13051 -23.26595 -23.17254 -22.25350 -20.31808 -19.75285 -18.92415 -18.70026 -18.25485 -17.60400 -17.28857 -16.97553 -16.71263 -16.17691 -16.08423 -15.74510 -15.35528 -15.11925 -14.88904 -14.64213 -14.35154 -14.04727 -13.98657 -13.63758 -13.52555 -13.38286 -13.16002 -13.10336 -13.00824 -12.83954 -12.74484 -12.61991 -12.35311 -12.18554 -12.11288 -12.01027 -11.75843 -11.66530 -11.45718 -11.45288 -11.28625 -10.69426 -10.47220 -9.65005 -9.59064 -9.29917 -8.19732 -6.29991 0.71886 0.76373 1.09441 1.40824 1.45222 1.54643 1.82429 2.00886 2.17696 2.42792 3.07924 3.21572 3.25744 3.47884 3.86507 4.09908 4.15156 4.21635 4.26980 4.27452 4.36229 4.40185 4.49281 4.50609 4.59195 4.72140 4.76971 4.81492 4.83850 4.92864 4.94391 5.06977 5.09121 5.19232 5.20294 5.29406 5.32986 5.40675 5.43711 5.51846 5.58774 5.64677 5.74896 5.80213 5.92652 6.20415 6.36916 6.63904 6.73248 6.89947 7.35036 7.38454 8.89117 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.004987 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.461435 B = 5613.133309 C = 7206.726391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 H 0.074 0.926 4 C 0.121 3.879 5 N -0.623 5.623 6 C 0.544 3.456 7 O -0.594 6.594 8 C 0.061 3.939 9 H 0.056 0.944 10 C -0.507 4.507 11 H 0.054 0.946 12 C 0.038 3.962 13 N -0.906 5.906 14 Si 0.950 3.050 15 H -0.266 1.266 16 H -0.288 1.288 17 H -0.271 1.271 18 C -0.041 4.041 19 C -0.108 4.108 20 C -0.133 4.133 21 C -0.142 4.142 22 C -0.130 4.130 23 C -0.145 4.145 24 C 0.113 3.887 25 C -0.059 4.059 26 C -0.130 4.130 27 C 0.491 3.509 28 O -0.547 6.547 29 O -0.505 6.505 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.266 0.734 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.720 -2.553 -11.267 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.002 4.002 5 N -0.355 5.355 6 C 0.336 3.664 7 O -0.476 6.476 8 C 0.040 3.960 9 H 0.074 0.926 10 C -0.544 4.544 11 H 0.072 0.928 12 C -0.164 4.164 13 N -0.543 5.543 14 Si 0.775 3.225 15 H -0.190 1.190 16 H -0.214 1.214 17 H -0.196 1.196 18 C -0.042 4.042 19 C -0.127 4.127 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.147 4.147 23 C -0.163 4.163 24 C -0.009 4.009 25 C -0.061 4.061 26 C -0.187 4.187 27 C 0.334 3.666 28 O -0.437 6.437 29 O -0.318 6.318 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.127 0.873 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -5.369 -2.686 -11.078 12.600 hybrid contribution 0.169 0.622 0.623 0.896 sum -5.200 -2.064 -10.456 11.858 Atomic orbital electron populations 1.21902 0.90436 1.03934 1.02951 1.22291 0.98905 0.99218 0.91315 0.90798 1.22461 0.85988 0.95560 0.96144 1.48853 1.13467 1.56102 1.17127 1.21212 0.79444 0.77834 0.87913 1.90547 1.42936 1.44884 1.69209 1.17912 0.91840 0.98016 0.88256 0.92616 1.20629 1.23035 1.01686 1.09071 0.92787 1.25536 0.97061 0.94801 0.99028 1.70020 1.45520 1.09370 1.29344 0.85620 0.78830 0.79195 0.78806 1.19009 1.21406 1.19571 1.20155 0.94868 0.93638 0.95548 1.20855 0.96592 0.95724 0.99480 1.21348 0.93195 1.00312 1.00261 1.21285 1.00302 0.92359 1.01997 1.21290 0.95707 0.97635 1.00113 1.21110 0.94540 0.98296 1.02339 1.22472 0.99008 0.96213 0.83211 1.21523 0.95614 0.94345 0.94621 1.21977 0.94710 1.02558 0.99470 1.23556 0.77603 0.86367 0.79054 1.90688 1.60697 1.21746 1.70601 1.84473 1.61254 1.49402 1.36679 0.92082 0.89665 0.90496 0.91601 0.89510 0.92455 0.88428 0.84338 0.83323 0.84330 0.88184 0.91214 0.87285 0.90064 0.90286 0.88217 0.71335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.93 71.98 0.57 -1.98 16 2 C -0.10 -2.72 3.24 -9.88 -0.03 -2.75 16 3 H 0.07 2.50 6.47 -2.39 -0.02 2.48 16 4 C 0.12 4.25 5.60 86.54 0.48 4.74 16 5 N -0.62 -24.78 3.30 -807.96 -2.67 -27.45 16 6 C 0.54 26.42 7.16 87.65 0.63 27.05 16 7 O -0.59 -31.23 15.70 -3.04 -0.05 -31.28 16 8 C 0.06 3.13 1.71 -13.04 -0.02 3.10 16 9 H 0.06 3.16 6.95 -2.39 -0.02 3.15 16 10 C -0.51 -26.02 6.09 25.60 0.16 -25.86 16 11 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 12 C 0.04 1.93 5.45 84.66 0.46 2.39 16 13 N -0.91 -49.12 12.85 21.45 0.28 -48.84 16 14 Si 0.95 40.83 29.54 68.60 2.03 42.86 16 15 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 16 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 C -0.04 -2.06 4.30 -19.86 -0.09 -2.15 16 19 C -0.11 -5.07 8.32 22.27 0.19 -4.88 16 20 C -0.13 -5.17 10.05 22.27 0.22 -4.95 16 21 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 22 C -0.13 -5.01 10.05 22.27 0.22 -4.79 16 23 C -0.14 -6.76 9.67 22.27 0.22 -6.55 16 24 C 0.11 3.43 6.13 86.53 0.53 3.96 16 25 C -0.06 -1.47 0.97 -52.03 -0.05 -1.52 16 26 C -0.13 -1.96 7.21 71.98 0.52 -1.44 16 27 C 0.49 13.99 6.90 71.24 0.49 14.48 16 28 O -0.55 -19.62 16.02 21.96 0.35 -19.27 16 29 O -0.51 -11.01 13.13 -51.41 -0.68 -11.68 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.25 6.61 -2.38 -0.02 1.23 16 32 H 0.08 1.18 6.98 -2.39 -0.02 1.17 16 33 H 0.07 2.82 6.91 -2.39 -0.02 2.81 16 34 H 0.09 2.74 7.86 -2.39 -0.02 2.72 16 35 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.10 4.69 7.88 -2.91 -0.02 4.67 16 37 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 40 H 0.10 4.73 7.96 -2.91 -0.02 4.71 16 41 H 0.07 2.32 7.47 -2.39 -0.02 2.31 16 42 H 0.11 2.68 7.84 -2.39 -0.02 2.66 16 43 H 0.08 1.04 6.89 -2.39 -0.02 1.02 16 44 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 45 H 0.10 1.14 6.68 -2.39 -0.02 1.12 16 46 H 0.43 5.84 9.10 -74.06 -0.67 5.17 16 Total: -1.00 -72.79 374.80 4.31 -68.48 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.33 Total: 33.12 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 4.72 Total: -5.93 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -2.39 Total: -76.29 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -0.37 Total: -62.23 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -72.79 4.31 -68.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599911588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.775 kcal (2) G-P(sol) polarization free energy of solvation -72.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds