Wall clock time and date at job start Tue Mar 31 2020 17:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.38823 * 2 1 4 4 C 1.54389 * 110.34189 * 122.22860 * 2 1 3 5 5 N 1.48148 * 104.61352 * 95.00908 * 4 2 1 6 6 C 1.34774 * 127.83712 * 219.56275 * 5 4 2 7 7 O 1.21280 * 120.00262 * 180.02562 * 6 5 4 8 8 C 1.50707 * 119.99807 * 0.02562 * 6 5 4 9 9 C 1.50705 * 109.46812 * 179.97438 * 8 6 5 10 10 C 1.37640 * 120.12574 * 264.72662 * 9 8 6 11 11 C 1.38615 * 120.24345 * 179.70417 * 10 9 8 12 12 C 1.38657 * 120.50122 * 0.59412 * 11 10 9 13 13 C 1.37593 * 120.24916 * 359.68836 * 12 11 10 14 14 C 1.40700 * 120.12641 * 85.00384 * 9 8 6 15 15 C 1.41396 * 120.24448 * 0.02562 * 14 9 8 16 16 H 1.08006 * 119.99540 * 334.58142 * 15 14 9 17 17 C 1.39939 * 119.99842 * 154.58301 * 15 14 9 18 18 N 1.30822 * 120.00148 * 342.83435 * 17 15 14 19 19 Si 1.86802 * 119.99934 * 162.83973 * 17 15 14 20 20 H 1.48498 * 109.47338 * 94.64424 * 19 17 15 21 21 H 1.48500 * 109.47145 * 214.64741 * 19 17 15 22 22 H 1.48509 * 109.46970 * 334.64849 * 19 17 15 23 23 C 1.48142 * 104.32408 * 39.58563 * 5 4 2 24 24 C 1.54288 * 110.34734 * 237.76914 * 2 1 3 25 25 C 1.53002 * 110.42810 * 0.04715 * 24 2 1 26 26 C 1.50698 * 110.34313 * 122.25389 * 24 2 1 27 27 O 1.20826 * 120.00028 * 356.99664 * 26 24 2 28 28 O 1.34227 * 120.00181 * 177.26636 * 26 24 2 29 29 H 1.08998 * 109.46520 * 182.22773 * 1 2 3 30 30 H 1.08991 * 109.47582 * 302.23368 * 1 2 3 31 31 H 1.09004 * 109.47100 * 62.23688 * 1 2 3 32 32 H 1.08995 * 110.40759 * 336.22856 * 4 2 1 33 33 H 1.09000 * 110.40793 * 213.78986 * 4 2 1 34 34 H 1.08998 * 109.47037 * 300.00064 * 8 6 5 35 35 H 1.08996 * 109.46779 * 60.00067 * 8 6 5 36 36 H 1.07990 * 119.87940 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.74840 * 180.30076 * 11 10 9 38 38 H 1.08003 * 119.87386 * 179.69923 * 12 11 10 39 39 H 1.08007 * 120.12810 * 180.02562 * 13 12 11 40 40 H 0.97007 * 119.99907 * 180.02562 * 18 17 15 41 41 H 1.09002 * 110.40750 * 201.62873 * 23 5 4 42 42 H 1.09002 * 110.40866 * 79.20330 * 23 5 4 43 43 H 1.09000 * 109.47224 * 181.53533 * 25 24 2 44 44 H 1.09002 * 109.47198 * 301.53153 * 25 24 2 45 45 H 1.08999 * 109.47747 * 61.53392 * 25 24 2 46 46 H 0.96700 * 117.00168 * 179.72844 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 1.2246 5 7 2.3140 -2.1438 0.7226 6 6 2.0778 -3.3104 1.3547 7 8 2.3369 -4.3606 0.8061 8 6 1.4918 -3.3101 2.7431 9 6 1.3274 -4.7305 3.2193 10 6 0.1193 -5.3732 3.0714 11 6 -0.0329 -6.6816 3.5029 12 6 1.0236 -7.3536 4.0986 13 6 2.2386 -6.7288 4.2619 14 6 2.4065 -5.4026 3.8220 15 6 3.6504 -4.7502 3.9850 16 1 3.9260 -3.9407 3.3253 17 6 4.5241 -5.1535 5.0009 18 7 4.0811 -5.8801 5.9946 19 14 6.3231 -4.6544 4.9384 20 1 6.5215 -3.4170 5.7351 21 1 7.1593 -5.7449 5.5012 22 1 6.7187 -4.4043 3.5290 23 6 2.8803 -1.9421 -0.6314 24 6 2.0665 -0.7715 -1.2237 25 6 0.9078 -1.3035 -2.0696 26 6 2.9557 0.1172 -2.0547 27 8 3.1097 1.2753 -1.7468 28 8 3.5722 -0.3765 -3.1400 29 1 -0.3632 -1.0269 0.0399 30 1 -0.3634 0.5481 0.8692 31 1 -0.3633 0.4787 -0.9094 32 1 1.3222 -0.7870 2.0205 33 1 2.9949 -0.3240 1.5794 34 1 2.1588 -2.7748 3.4189 35 1 0.5194 -2.8179 2.7268 36 1 -0.7116 -4.8579 2.6127 37 1 -0.9830 -7.1799 3.3785 38 1 0.8924 -8.3713 4.4354 39 1 3.0604 -7.2542 4.7257 40 1 4.6867 -6.1593 6.6990 41 1 2.7496 -2.8398 -1.2356 42 1 3.9355 -1.6769 -0.5664 43 1 1.3036 -1.8682 -2.9137 44 1 0.2810 -1.9537 -1.4593 45 1 0.3134 -0.4676 -2.4384 46 1 4.1292 0.2328 -3.6437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599918518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:41 Heat of formation + Delta-G solvation = -107.558914 kcal Electronic energy + Delta-G solvation = -29075.115081 eV Core-core repulsion = 25122.160543 eV Total energy + Delta-G solvation = -3952.954538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25512 -39.49365 -38.05507 -36.98022 -36.34537 -33.60782 -33.33336 -31.78690 -31.22272 -29.44227 -27.96302 -26.63382 -25.80076 -25.04758 -24.05975 -22.37087 -20.91815 -20.12828 -19.29627 -18.66347 -18.18361 -17.33852 -17.09214 -16.49426 -15.95425 -15.52222 -15.12758 -14.89212 -14.50922 -14.33013 -14.21976 -13.71386 -13.57554 -13.46682 -13.24938 -12.81942 -12.60073 -12.55469 -12.31952 -12.05743 -11.87930 -11.73650 -11.66485 -11.54463 -11.24023 -11.12678 -11.02476 -10.95100 -10.88571 -10.85713 -10.70917 -10.63558 -10.38198 -9.46418 -9.36759 -9.20301 -9.12483 -8.48997 -7.29751 -7.27699 -6.72822 -4.32154 1.89443 2.64147 2.79993 2.96177 3.07999 3.13663 3.25732 3.28866 3.40116 3.95242 4.04628 4.29886 4.50281 4.67443 4.90154 4.97087 5.03228 5.19934 5.25443 5.37945 5.49430 5.54736 5.58813 5.63973 5.73376 5.80007 5.81707 5.87299 5.90112 5.99783 6.07963 6.15746 6.21797 6.29792 6.44086 6.46410 6.53546 6.81879 7.10239 7.31457 7.44168 7.59960 7.65631 7.86341 7.95554 8.09227 8.15251 8.33355 8.66309 8.78240 8.93516 9.03494 10.21383 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.003737 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.420020 B = 7490.227670 C = 8750.893653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.107 0.893 4 C 0.104 3.896 5 N -0.632 5.632 6 C 0.539 3.461 7 O -0.515 6.515 8 C -0.063 4.063 9 C -0.184 4.184 10 C -0.080 4.080 11 C -0.240 4.240 12 C -0.106 4.106 13 C -0.160 4.160 14 C 0.130 3.870 15 C -0.456 4.456 16 H 0.073 0.927 17 C 0.078 3.922 18 N -0.794 5.794 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.261 1.261 23 C 0.122 3.878 24 C -0.065 4.065 25 C -0.137 4.137 26 C 0.496 3.504 27 O -0.512 6.512 28 O -0.510 6.510 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 12.716 -11.860 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.125 0.875 4 C -0.019 4.019 5 N -0.370 5.370 6 C 0.330 3.670 7 O -0.388 6.388 8 C -0.103 4.103 9 C -0.186 4.186 10 C -0.098 4.098 11 C -0.260 4.260 12 C -0.125 4.125 13 C -0.179 4.179 14 C 0.127 3.873 15 C -0.486 4.486 16 H 0.091 0.909 17 C -0.139 4.139 18 N -0.419 5.419 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.185 1.185 23 C -0.002 4.002 24 C -0.067 4.067 25 C -0.194 4.194 26 C 0.337 3.663 27 O -0.400 6.400 28 O -0.321 6.321 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.307 11.923 -11.539 16.919 hybrid contribution 1.348 0.725 -0.321 1.564 sum -1.959 12.648 -11.860 17.449 Atomic orbital electron populations 1.21940 0.93497 1.02590 1.02116 1.22282 0.97120 1.00486 0.91891 0.87488 1.22474 1.01141 0.81945 0.96363 1.49162 1.65568 1.05912 1.16382 1.21035 0.77052 0.80950 0.87984 1.90700 1.50729 1.30168 1.67218 1.20231 1.00302 0.98229 0.91527 1.19039 0.94438 0.93762 1.11326 1.20284 0.95618 0.94671 0.99219 1.20296 0.98240 0.96187 1.11244 1.20673 0.94395 0.97731 0.99668 1.21283 0.96597 0.95141 1.04905 1.17328 0.91186 0.90828 0.87921 1.19467 1.00266 1.16232 1.12599 0.90852 1.25864 1.00473 0.93467 0.94131 1.69826 1.36691 1.28283 1.07100 0.86424 0.82409 0.78988 0.79689 1.19597 1.19992 1.18531 1.22095 0.96000 0.96804 0.85269 1.21473 0.95255 0.95321 0.94691 1.21938 0.96343 1.01533 0.99544 1.23173 0.77543 0.86901 0.78643 1.90691 1.60745 1.19010 1.69516 1.84563 1.60142 1.48140 1.39249 0.91745 0.91892 0.92199 0.89238 0.90915 0.88587 0.90621 0.89800 0.89683 0.89598 0.86577 0.90970 0.88650 0.91324 0.91275 0.90153 0.91677 0.73175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.92 37.16 0.29 -0.93 16 2 C -0.10 -0.98 3.25 -89.22 -0.29 -1.27 16 3 H 0.11 1.10 6.47 -51.93 -0.34 0.77 16 4 C 0.10 1.20 6.46 -2.41 -0.02 1.18 16 5 N -0.63 -9.51 3.32 -169.31 -0.56 -10.07 16 6 C 0.54 10.55 7.55 -10.98 -0.08 10.46 16 7 O -0.52 -12.36 16.30 5.56 0.09 -12.27 16 8 C -0.06 -1.24 4.16 -29.03 -0.12 -1.36 16 9 C -0.18 -4.41 4.43 -103.91 -0.46 -4.87 16 10 C -0.08 -1.83 9.66 -39.66 -0.38 -2.21 16 11 C -0.24 -5.59 10.05 -39.29 -0.39 -5.98 16 12 C -0.11 -2.60 10.02 -39.66 -0.40 -2.99 16 13 C -0.16 -4.29 8.69 -38.88 -0.34 -4.62 16 14 C 0.13 3.47 5.57 -106.82 -0.59 2.88 16 15 C -0.46 -12.04 8.15 -37.74 -0.31 -12.35 16 16 H 0.07 1.90 6.66 -52.48 -0.35 1.55 16 17 C 0.08 1.97 5.15 -17.34 -0.09 1.88 16 18 N -0.79 -20.50 10.98 55.55 0.61 -19.89 16 19 Si 0.90 18.99 29.59 -169.99 -5.03 13.95 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 23 C 0.12 1.60 6.11 -2.42 -0.01 1.59 16 24 C -0.07 -0.68 0.97 -154.26 -0.15 -0.83 16 25 C -0.14 -1.25 7.20 37.16 0.27 -0.98 16 26 C 0.50 5.17 6.83 36.00 0.25 5.41 16 27 O -0.51 -6.45 16.02 -18.75 -0.30 -6.75 16 28 O -0.51 -4.16 13.36 -39.25 -0.52 -4.68 16 29 H 0.06 0.60 6.77 -51.93 -0.35 0.25 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 6.85 -51.93 -0.36 0.10 16 32 H 0.09 0.93 7.02 -51.93 -0.36 0.57 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.87 7.05 -51.93 -0.37 1.50 16 35 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 36 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.12 3.20 6.21 -52.48 -0.33 2.87 16 40 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 41 H 0.10 1.35 7.60 -51.93 -0.39 0.95 16 42 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.80 6.71 -51.93 -0.35 0.45 16 45 H 0.06 0.51 6.90 -51.93 -0.36 0.15 16 46 H 0.41 1.55 9.10 45.56 0.41 1.97 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -32.81 373.02 -8.55 -41.36 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.62 Total: 7.73 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -2.83 Total: -15.01 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.05 Total: -29.96 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.73 Total: -23.70 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.81 -8.55 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599918518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.202 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds