Wall clock time and date at job start Tue Mar 31 2020 17:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.38823 * 2 1 4 4 C 1.54389 * 110.34189 * 122.22860 * 2 1 3 5 5 N 1.48148 * 104.61352 * 95.00908 * 4 2 1 6 6 C 1.34774 * 127.83712 * 219.56275 * 5 4 2 7 7 O 1.21280 * 120.00262 * 180.02562 * 6 5 4 8 8 C 1.50707 * 119.99807 * 0.02562 * 6 5 4 9 9 C 1.50705 * 109.46812 * 179.97438 * 8 6 5 10 10 C 1.37640 * 120.12574 * 264.72662 * 9 8 6 11 11 C 1.38615 * 120.24345 * 179.70417 * 10 9 8 12 12 C 1.38657 * 120.50122 * 0.59412 * 11 10 9 13 13 C 1.37593 * 120.24916 * 359.68836 * 12 11 10 14 14 C 1.40700 * 120.12641 * 85.00384 * 9 8 6 15 15 C 1.41396 * 120.24448 * 0.02562 * 14 9 8 16 16 H 1.08006 * 119.99540 * 334.58142 * 15 14 9 17 17 C 1.39939 * 119.99842 * 154.58301 * 15 14 9 18 18 N 1.30822 * 120.00148 * 342.83435 * 17 15 14 19 19 Si 1.86802 * 119.99934 * 162.83973 * 17 15 14 20 20 H 1.48498 * 109.47338 * 94.64424 * 19 17 15 21 21 H 1.48500 * 109.47145 * 214.64741 * 19 17 15 22 22 H 1.48509 * 109.46970 * 334.64849 * 19 17 15 23 23 C 1.48142 * 104.32408 * 39.58563 * 5 4 2 24 24 C 1.54288 * 110.34734 * 237.76914 * 2 1 3 25 25 C 1.53002 * 110.42810 * 0.04715 * 24 2 1 26 26 C 1.50698 * 110.34313 * 122.25389 * 24 2 1 27 27 O 1.20826 * 120.00028 * 356.99664 * 26 24 2 28 28 O 1.34227 * 120.00181 * 177.26636 * 26 24 2 29 29 H 1.08998 * 109.46520 * 182.22773 * 1 2 3 30 30 H 1.08991 * 109.47582 * 302.23368 * 1 2 3 31 31 H 1.09004 * 109.47100 * 62.23688 * 1 2 3 32 32 H 1.08995 * 110.40759 * 336.22856 * 4 2 1 33 33 H 1.09000 * 110.40793 * 213.78986 * 4 2 1 34 34 H 1.08998 * 109.47037 * 300.00064 * 8 6 5 35 35 H 1.08996 * 109.46779 * 60.00067 * 8 6 5 36 36 H 1.07990 * 119.87940 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.74840 * 180.30076 * 11 10 9 38 38 H 1.08003 * 119.87386 * 179.69923 * 12 11 10 39 39 H 1.08007 * 120.12810 * 180.02562 * 13 12 11 40 40 H 0.97007 * 119.99907 * 180.02562 * 18 17 15 41 41 H 1.09002 * 110.40750 * 201.62873 * 23 5 4 42 42 H 1.09002 * 110.40866 * 79.20330 * 23 5 4 43 43 H 1.09000 * 109.47224 * 181.53533 * 25 24 2 44 44 H 1.09002 * 109.47198 * 301.53153 * 25 24 2 45 45 H 1.08999 * 109.47747 * 61.53392 * 25 24 2 46 46 H 0.96700 * 117.00168 * 179.72844 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 1.2246 5 7 2.3140 -2.1438 0.7226 6 6 2.0778 -3.3104 1.3547 7 8 2.3369 -4.3606 0.8061 8 6 1.4918 -3.3101 2.7431 9 6 1.3274 -4.7305 3.2193 10 6 0.1193 -5.3732 3.0714 11 6 -0.0329 -6.6816 3.5029 12 6 1.0236 -7.3536 4.0986 13 6 2.2386 -6.7288 4.2619 14 6 2.4065 -5.4026 3.8220 15 6 3.6504 -4.7502 3.9850 16 1 3.9260 -3.9407 3.3253 17 6 4.5241 -5.1535 5.0009 18 7 4.0811 -5.8801 5.9946 19 14 6.3231 -4.6544 4.9384 20 1 6.5215 -3.4170 5.7351 21 1 7.1593 -5.7449 5.5012 22 1 6.7187 -4.4043 3.5290 23 6 2.8803 -1.9421 -0.6314 24 6 2.0665 -0.7715 -1.2237 25 6 0.9078 -1.3035 -2.0696 26 6 2.9557 0.1172 -2.0547 27 8 3.1097 1.2753 -1.7468 28 8 3.5722 -0.3765 -3.1400 29 1 -0.3632 -1.0269 0.0399 30 1 -0.3634 0.5481 0.8692 31 1 -0.3633 0.4787 -0.9094 32 1 1.3222 -0.7870 2.0205 33 1 2.9949 -0.3240 1.5794 34 1 2.1588 -2.7748 3.4189 35 1 0.5194 -2.8179 2.7268 36 1 -0.7116 -4.8579 2.6127 37 1 -0.9830 -7.1799 3.3785 38 1 0.8924 -8.3713 4.4354 39 1 3.0604 -7.2542 4.7257 40 1 4.6867 -6.1593 6.6990 41 1 2.7496 -2.8398 -1.2356 42 1 3.9355 -1.6769 -0.5664 43 1 1.3036 -1.8682 -2.9137 44 1 0.2810 -1.9537 -1.4593 45 1 0.3134 -0.4676 -2.4384 46 1 4.1292 0.2328 -3.6437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599918518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:40 Heat of formation + Delta-G solvation = -127.183632 kcal Electronic energy + Delta-G solvation = -29075.966073 eV Core-core repulsion = 25122.160543 eV Total energy + Delta-G solvation = -3953.805530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15894 -40.73608 -39.49054 -38.52346 -37.14868 -35.50063 -34.49140 -33.36985 -32.17837 -31.33791 -29.29798 -27.90379 -26.98683 -26.56701 -25.18472 -23.22570 -22.81394 -21.79916 -20.38784 -19.82147 -19.04684 -18.98023 -18.33068 -17.73017 -17.29476 -16.81679 -16.41085 -16.34570 -16.01856 -15.61206 -15.37108 -15.13550 -14.78495 -14.53540 -14.51094 -14.37358 -13.90209 -13.54995 -13.46268 -13.36366 -13.31178 -12.98614 -12.85442 -12.74569 -12.67186 -12.62745 -12.49986 -12.46089 -12.13990 -12.02620 -11.69684 -11.67306 -11.51616 -11.31003 -11.20713 -11.01360 -10.76307 -9.74746 -9.22009 -9.15348 -8.60368 -6.28679 0.98412 1.06646 1.14420 1.34498 1.45751 1.52815 1.77121 1.84322 2.18853 2.20298 2.78227 3.17184 3.38820 3.69571 3.73142 4.04453 4.09896 4.15760 4.26323 4.34476 4.39093 4.46070 4.57607 4.58276 4.65838 4.68087 4.71769 4.72356 4.81111 4.81601 4.86609 5.04398 5.09988 5.14138 5.15607 5.20075 5.32973 5.37856 5.48132 5.55722 5.55897 5.78080 6.04836 6.17289 6.23101 6.42914 6.55349 6.74620 6.93505 6.99695 7.12110 7.31472 8.36194 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.003737 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.420020 B = 7490.227670 C = 8750.893653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.110 0.890 4 C 0.097 3.903 5 N -0.627 5.627 6 C 0.541 3.459 7 O -0.572 6.572 8 C -0.060 4.060 9 C -0.189 4.189 10 C -0.089 4.089 11 C -0.242 4.242 12 C -0.117 4.117 13 C -0.195 4.195 14 C 0.097 3.903 15 C -0.483 4.483 16 H 0.068 0.932 17 C 0.039 3.961 18 N -0.824 5.824 19 Si 0.967 3.033 20 H -0.255 1.255 21 H -0.267 1.267 22 H -0.270 1.270 23 C 0.118 3.882 24 C -0.060 4.060 25 C -0.133 4.133 26 C 0.503 3.497 27 O -0.534 6.534 28 O -0.507 6.507 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.286 0.714 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 14.853 -12.849 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.128 0.872 4 C -0.025 4.025 5 N -0.362 5.362 6 C 0.332 3.668 7 O -0.450 6.450 8 C -0.099 4.099 9 C -0.191 4.191 10 C -0.107 4.107 11 C -0.261 4.261 12 C -0.135 4.135 13 C -0.214 4.214 14 C 0.095 3.905 15 C -0.513 4.513 16 H 0.086 0.914 17 C -0.176 4.176 18 N -0.450 5.450 19 Si 0.789 3.211 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.194 1.194 23 C -0.005 4.005 24 C -0.062 4.062 25 C -0.190 4.190 26 C 0.345 3.655 27 O -0.423 6.423 28 O -0.321 6.321 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -4.214 14.117 -12.547 19.351 hybrid contribution 1.561 0.081 -0.102 1.567 sum -2.653 14.198 -12.649 19.200 Atomic orbital electron populations 1.21940 0.92059 1.02479 1.03415 1.22244 0.98216 0.99957 0.90536 0.87248 1.22778 1.02146 0.79914 0.97670 1.49011 1.63987 1.06181 1.17042 1.20847 0.76745 0.81323 0.87865 1.90673 1.53425 1.32406 1.68449 1.20211 1.02303 0.95967 0.91456 1.19520 0.94046 0.95761 1.09774 1.20728 0.96321 0.94880 0.98737 1.20718 0.98976 0.96534 1.09880 1.20949 0.94070 0.98780 0.99696 1.21289 0.97246 0.95865 1.07018 1.17716 0.92475 0.91241 0.89104 1.19592 1.01299 1.16999 1.13382 0.91381 1.26612 1.04254 0.93328 0.93383 1.69881 1.38214 1.29200 1.07714 0.85417 0.77184 0.79320 0.79184 1.17962 1.19152 1.19408 1.22185 0.96549 0.97496 0.84266 1.21416 0.95349 0.94254 0.95213 1.21929 0.95854 1.02053 0.99190 1.23012 0.77249 0.86332 0.78872 1.90691 1.61534 1.19855 1.70256 1.84522 1.60127 1.48727 1.38676 0.92494 0.90600 0.91011 0.87761 0.90332 0.88803 0.86927 0.86397 0.86621 0.87713 0.88624 0.90336 0.90062 0.91279 0.91185 0.90924 0.89809 0.70832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.92 71.98 0.57 -1.41 16 2 C -0.09 -1.58 3.25 -9.89 -0.03 -1.61 16 3 H 0.11 1.96 6.47 -2.39 -0.02 1.94 16 4 C 0.10 2.04 6.46 86.53 0.56 2.60 16 5 N -0.63 -18.32 3.32 -807.97 -2.68 -21.00 16 6 C 0.54 21.11 7.55 87.66 0.66 21.77 16 7 O -0.57 -28.08 16.30 -3.03 -0.05 -28.13 16 8 C -0.06 -2.30 4.16 29.11 0.12 -2.17 16 9 C -0.19 -9.09 4.43 -19.40 -0.09 -9.18 16 10 C -0.09 -3.95 9.66 22.22 0.21 -3.74 16 11 C -0.24 -10.96 10.05 22.46 0.23 -10.73 16 12 C -0.12 -5.76 10.02 22.22 0.22 -5.54 16 13 C -0.19 -10.84 8.69 22.73 0.20 -10.64 16 14 C 0.10 5.34 5.57 -21.29 -0.12 5.23 16 15 C -0.48 -26.39 8.15 23.46 0.19 -26.20 16 16 H 0.07 3.65 6.66 -2.91 -0.02 3.63 16 17 C 0.04 2.01 5.15 85.26 0.44 2.45 16 18 N -0.82 -43.92 10.98 21.82 0.24 -43.69 16 19 Si 0.97 39.66 29.59 68.60 2.03 41.69 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 C 0.12 3.03 6.11 86.53 0.53 3.56 16 24 C -0.06 -1.15 0.97 -52.02 -0.05 -1.20 16 25 C -0.13 -2.17 7.20 71.98 0.52 -1.65 16 26 C 0.50 9.45 6.83 71.24 0.49 9.93 16 27 O -0.53 -12.31 16.02 21.96 0.35 -11.96 16 28 O -0.51 -7.20 13.36 -51.39 -0.69 -7.89 16 29 H 0.06 0.90 6.77 -2.39 -0.02 0.89 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.85 6.85 -2.39 -0.02 0.83 16 32 H 0.10 1.89 7.02 -2.39 -0.02 1.87 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 3.62 7.05 -2.39 -0.02 3.61 16 35 H 0.11 3.37 7.86 -2.39 -0.02 3.35 16 36 H 0.12 4.37 8.06 -2.92 -0.02 4.34 16 37 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.10 5.58 6.21 -2.91 -0.02 5.56 16 40 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 41 H 0.08 2.32 7.60 -2.39 -0.02 2.30 16 42 H 0.07 1.75 7.86 -2.39 -0.02 1.74 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.32 6.71 -2.39 -0.02 1.31 16 45 H 0.08 1.06 6.90 -2.39 -0.02 1.04 16 46 H 0.43 2.25 9.10 -74.06 -0.67 1.57 16 Total: -1.00 -73.51 373.02 4.20 -69.31 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.34 Total: 30.19 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 4.65 Total: -28.53 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -2.44 Total: -64.69 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -0.38 Total: -47.98 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -73.51 4.20 -69.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599918518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.870 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds