Wall clock time and date at job start Tue Mar 31 2020 17:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49559 * 2 1 4 4 C 1.53188 * 109.49649 * 120.06019 * 2 1 3 5 5 N 1.46928 * 108.77708 * 65.32156 * 4 2 1 6 6 C 1.34777 * 120.62939 * 233.58688 * 5 4 2 7 7 O 1.21283 * 120.00372 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00071 * 179.72140 * 6 5 4 9 9 C 1.50704 * 109.47613 * 180.27244 * 8 6 5 10 10 C 1.37634 * 120.12680 * 265.00428 * 9 8 6 11 11 C 1.38614 * 120.24515 * 179.97438 * 10 9 8 12 12 C 1.38657 * 120.50254 * 0.02562 * 11 10 9 13 13 C 1.37594 * 120.24870 * 0.02562 * 12 11 10 14 14 C 1.40701 * 120.12245 * 84.72533 * 9 8 6 15 15 C 1.41392 * 120.24764 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00155 * 333.91029 * 15 14 9 17 17 C 1.39950 * 119.99738 * 153.90173 * 15 14 9 18 18 N 1.30821 * 120.00053 * 343.70919 * 17 15 14 19 19 Si 1.86799 * 119.99552 * 163.71269 * 17 15 14 20 20 H 1.48499 * 109.47250 * 94.96568 * 19 17 15 21 21 H 1.48507 * 109.46743 * 214.95874 * 19 17 15 22 22 H 1.48494 * 109.47373 * 334.96218 * 19 17 15 23 23 C 1.46925 * 118.73928 * 53.85753 * 5 4 2 24 24 C 1.53625 * 108.54249 * 306.09361 * 23 5 4 25 25 C 1.53036 * 109.49920 * 239.90087 * 2 1 3 26 26 H 1.09003 * 109.46090 * 181.39572 * 25 2 1 27 27 C 1.50699 * 109.46281 * 61.41614 * 25 2 1 28 28 O 1.20827 * 119.99736 * 0.02562 * 27 25 2 29 29 O 1.34224 * 120.00146 * 179.97438 * 27 25 2 30 30 H 1.08993 * 109.47150 * 299.93671 * 1 2 3 31 31 H 1.08999 * 109.46881 * 59.94519 * 1 2 3 32 32 H 1.09010 * 109.46810 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.59037 * 305.53499 * 4 2 1 34 34 H 1.09005 * 109.58856 * 185.10304 * 4 2 1 35 35 H 1.08999 * 109.47377 * 300.27380 * 8 6 5 36 36 H 1.09001 * 109.47452 * 60.27462 * 8 6 5 37 37 H 1.07994 * 119.87779 * 359.97438 * 10 9 8 38 38 H 1.08001 * 119.74892 * 179.97438 * 11 10 9 39 39 H 1.08000 * 119.87664 * 180.02562 * 12 11 10 40 40 H 1.08002 * 120.12793 * 179.97438 * 13 12 11 41 41 H 0.96997 * 119.99856 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.58404 * 65.92846 * 23 5 4 43 43 H 1.09001 * 109.58317 * 186.35724 * 23 5 4 44 44 H 1.09000 * 109.63794 * 294.87082 * 24 23 5 45 45 H 1.09003 * 109.45910 * 174.73942 * 24 23 5 46 46 H 0.96701 * 117.00006 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 1.2498 5 7 1.6517 -2.1378 1.1703 6 6 0.9749 -2.7213 2.1792 7 8 0.6821 -2.0783 3.1650 8 6 0.5768 -4.1714 2.0800 9 6 -0.1689 -4.5741 3.3261 10 6 0.5013 -5.1704 4.3699 11 6 -0.1821 -5.5413 5.5175 12 6 -1.5460 -5.3174 5.6278 13 6 -2.2366 -4.7236 4.5964 14 6 -1.5519 -4.3365 3.4293 15 6 -2.2497 -3.7188 2.3659 16 1 -1.7265 -3.0639 1.6850 17 6 -3.6184 -3.9562 2.1958 18 7 -4.1860 -4.9702 2.7967 19 14 -4.6345 -2.8253 1.1105 20 1 -4.7253 -3.4003 -0.2557 21 1 -5.9987 -2.6865 1.6806 22 1 -3.9876 -1.4904 1.0438 23 6 2.0191 -2.9055 -0.0273 24 6 1.5031 -2.1562 -1.2653 25 6 2.0409 -0.7235 -1.2481 26 1 3.1306 -0.7448 -1.2350 27 6 1.5677 0.0048 -2.4796 28 8 0.8918 1.0004 -2.3704 29 8 1.8978 -0.4518 -3.6978 30 1 -0.3633 0.5128 0.8905 31 1 -0.3633 0.5147 -0.8895 32 1 -0.3633 -1.0278 -0.0005 33 1 1.6007 -0.2724 2.1390 34 1 3.1275 -0.6458 1.2983 35 1 -0.0652 -4.3133 1.2106 36 1 1.4702 -4.7872 1.9763 37 1 1.5635 -5.3500 4.2946 38 1 0.3517 -6.0091 6.3315 39 1 -2.0683 -5.6100 6.5266 40 1 -3.2990 -4.5505 4.6842 41 1 -5.1346 -5.1349 2.6784 42 1 3.1034 -3.0022 -0.0809 43 1 1.5637 -3.8947 0.0189 44 1 0.4134 -2.1359 -1.2533 45 1 1.8477 -2.6634 -2.1665 46 1 1.5714 0.0491 -4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599918981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:44 Heat of formation + Delta-G solvation = -114.334356 kcal Electronic energy + Delta-G solvation = -29432.342132 eV Core-core repulsion = 25479.093788 eV Total energy + Delta-G solvation = -3953.248343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.03635 -39.65342 -37.86016 -36.90137 -36.27199 -33.59250 -33.44659 -32.04856 -31.36875 -29.42183 -27.56865 -27.28131 -25.69456 -24.75505 -23.10327 -22.31987 -20.90985 -20.49201 -19.21270 -18.39929 -18.24531 -17.13734 -17.07231 -16.38892 -15.78908 -15.64802 -15.37166 -15.07064 -14.60655 -14.38907 -14.09016 -13.68272 -13.59688 -13.48278 -13.03338 -12.96896 -12.67925 -12.53006 -11.98835 -11.98418 -11.79806 -11.61343 -11.54405 -11.47682 -11.17574 -11.07251 -10.99769 -10.94743 -10.71256 -10.65686 -10.62223 -10.36822 -10.33173 -9.45444 -9.33552 -9.13542 -9.09583 -8.36286 -7.27908 -7.25745 -6.70942 -4.31151 1.99308 2.78754 2.80746 2.97637 3.08613 3.14667 3.29094 3.31322 3.42702 3.95994 4.33559 4.46545 4.68803 4.72381 4.89301 5.10713 5.11993 5.15277 5.39061 5.45036 5.52224 5.58244 5.66880 5.77792 5.78875 5.90481 5.99115 6.03565 6.09753 6.14668 6.19231 6.30830 6.33146 6.44124 6.53918 6.57571 6.78508 6.85147 7.11609 7.32822 7.45532 7.65959 7.68854 7.79352 7.96301 8.10470 8.16379 8.34689 8.67926 8.84088 8.94984 9.04936 10.23112 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.004309 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.573978 B = 6496.133937 C = 7977.222810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 H 0.085 0.915 4 C 0.118 3.882 5 N -0.626 5.626 6 C 0.519 3.481 7 O -0.517 6.517 8 C -0.069 4.069 9 C -0.181 4.181 10 C -0.081 4.081 11 C -0.240 4.240 12 C -0.107 4.107 13 C -0.159 4.159 14 C 0.130 3.870 15 C -0.454 4.454 16 H 0.073 0.927 17 C 0.078 3.922 18 N -0.795 5.795 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.260 1.260 23 C 0.113 3.887 24 C -0.132 4.132 25 C -0.073 4.073 26 H 0.109 0.891 27 C 0.482 3.518 28 O -0.508 6.508 29 O -0.517 6.517 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.279 0.721 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.714 5.207 -12.017 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.108 4.108 3 H 0.104 0.896 4 C -0.005 4.005 5 N -0.363 5.363 6 C 0.309 3.691 7 O -0.390 6.390 8 C -0.109 4.109 9 C -0.183 4.183 10 C -0.100 4.100 11 C -0.259 4.259 12 C -0.126 4.126 13 C -0.179 4.179 14 C 0.127 3.873 15 C -0.484 4.484 16 H 0.091 0.909 17 C -0.139 4.139 18 N -0.421 5.421 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.011 4.011 24 C -0.170 4.170 25 C -0.092 4.092 26 H 0.127 0.873 27 C 0.324 3.676 28 O -0.395 6.395 29 O -0.329 6.329 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 11.255 5.479 -11.052 16.699 hybrid contribution -0.745 0.856 -1.137 1.606 sum 10.511 6.335 -12.189 17.297 Atomic orbital electron populations 1.22040 0.93614 1.02787 1.03013 1.21393 0.98020 0.99080 0.92283 0.89634 1.21527 0.98796 0.81814 0.98344 1.48243 1.58511 1.10583 1.18973 1.21249 0.75841 0.90372 0.81645 1.90675 1.52428 1.65142 1.30786 1.20293 0.99598 0.90757 1.00231 1.19065 0.94746 1.09357 0.95158 1.20289 0.96590 0.99188 0.93887 1.20301 0.94714 1.12194 0.98687 1.20673 0.94083 1.00198 0.97628 1.21298 0.99861 1.03698 0.93006 1.17326 0.90016 0.88189 0.91747 1.19445 0.92916 1.24726 1.11304 0.90858 1.25854 0.98404 0.94165 0.95503 1.69818 1.12811 1.23146 1.36318 0.86467 0.79402 0.81816 0.80137 1.19646 1.20015 1.18387 1.21740 0.99943 0.95852 0.83557 1.22101 1.02748 0.92727 0.99442 1.21101 1.02438 0.96257 0.89384 0.87326 1.23588 0.76590 0.82727 0.84666 1.90691 1.35841 1.25935 1.87038 1.84542 1.73022 1.58419 1.16950 0.92286 0.91063 0.92113 0.88377 0.91987 0.88651 0.90697 0.89819 0.89712 0.89630 0.86553 0.91023 0.91331 0.88562 0.90002 0.89486 0.73376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.40 37.16 0.31 -1.99 16 2 C -0.09 -1.03 2.36 -90.50 -0.21 -1.24 16 3 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 4 C 0.12 1.51 5.82 -3.71 -0.02 1.49 16 5 N -0.63 -8.90 2.40 -172.50 -0.41 -9.31 16 6 C 0.52 9.90 7.31 -10.99 -0.08 9.82 16 7 O -0.52 -12.22 15.45 5.55 0.09 -12.13 16 8 C -0.07 -1.32 3.52 -29.03 -0.10 -1.43 16 9 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16 10 C -0.08 -1.87 9.66 -39.66 -0.38 -2.25 16 11 C -0.24 -5.60 10.05 -39.29 -0.39 -5.99 16 12 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 13 C -0.16 -4.27 8.69 -38.87 -0.34 -4.61 16 14 C 0.13 3.45 5.56 -106.82 -0.59 2.86 16 15 C -0.45 -11.89 8.14 -37.74 -0.31 -12.20 16 16 H 0.07 1.87 6.67 -52.49 -0.35 1.52 16 17 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 18 N -0.80 -20.56 10.96 55.55 0.61 -19.95 16 19 Si 0.90 19.05 29.59 -169.99 -5.03 14.02 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 C 0.11 1.16 6.37 -3.49 -0.02 1.14 16 24 C -0.13 -1.25 4.97 -26.38 -0.13 -1.39 16 25 C -0.07 -0.69 2.37 -91.73 -0.22 -0.91 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 27 C 0.48 4.97 7.34 36.01 0.26 5.24 16 28 O -0.51 -6.80 14.51 -18.75 -0.27 -7.07 16 29 O -0.52 -3.97 13.30 -39.24 -0.52 -4.49 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.06 5.65 -51.93 -0.29 0.77 16 32 H 0.06 0.97 5.97 -51.92 -0.31 0.66 16 33 H 0.10 1.51 7.01 -51.93 -0.36 1.14 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.79 6.64 -51.93 -0.34 1.45 16 36 H 0.07 1.19 7.84 -51.93 -0.41 0.78 16 37 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.21 6.20 -52.49 -0.33 2.89 16 41 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.98 5.93 -51.93 -0.31 0.67 16 44 H 0.08 0.95 6.33 -51.93 -0.33 0.62 16 45 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 46 H 0.41 1.56 9.10 45.56 0.41 1.97 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -33.03 366.24 -8.75 -41.78 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.55 Total: 9.04 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -3.18 Total: -17.41 kcal Atomic # 7 Polarization: -29.46 SS G_CDS: 0.19 Total: -29.26 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.71 Total: -23.69 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.03 -8.75 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599918981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.553 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds