Wall clock time and date at job start Tue Mar 31 2020 17:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49559 * 2 1 4 4 C 1.53188 * 109.49649 * 120.06019 * 2 1 3 5 5 N 1.46928 * 108.77708 * 65.32156 * 4 2 1 6 6 C 1.34777 * 120.62939 * 233.58688 * 5 4 2 7 7 O 1.21283 * 120.00372 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00071 * 179.72140 * 6 5 4 9 9 C 1.50704 * 109.47613 * 180.27244 * 8 6 5 10 10 C 1.37634 * 120.12680 * 265.00428 * 9 8 6 11 11 C 1.38614 * 120.24515 * 179.97438 * 10 9 8 12 12 C 1.38657 * 120.50254 * 0.02562 * 11 10 9 13 13 C 1.37594 * 120.24870 * 0.02562 * 12 11 10 14 14 C 1.40701 * 120.12245 * 84.72533 * 9 8 6 15 15 C 1.41392 * 120.24764 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00155 * 333.91029 * 15 14 9 17 17 C 1.39950 * 119.99738 * 153.90173 * 15 14 9 18 18 N 1.30821 * 120.00053 * 343.70919 * 17 15 14 19 19 Si 1.86799 * 119.99552 * 163.71269 * 17 15 14 20 20 H 1.48499 * 109.47250 * 94.96568 * 19 17 15 21 21 H 1.48507 * 109.46743 * 214.95874 * 19 17 15 22 22 H 1.48494 * 109.47373 * 334.96218 * 19 17 15 23 23 C 1.46925 * 118.73928 * 53.85753 * 5 4 2 24 24 C 1.53625 * 108.54249 * 306.09361 * 23 5 4 25 25 C 1.53036 * 109.49920 * 239.90087 * 2 1 3 26 26 H 1.09003 * 109.46090 * 181.39572 * 25 2 1 27 27 C 1.50699 * 109.46281 * 61.41614 * 25 2 1 28 28 O 1.20827 * 119.99736 * 0.02562 * 27 25 2 29 29 O 1.34224 * 120.00146 * 179.97438 * 27 25 2 30 30 H 1.08993 * 109.47150 * 299.93671 * 1 2 3 31 31 H 1.08999 * 109.46881 * 59.94519 * 1 2 3 32 32 H 1.09010 * 109.46810 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.59037 * 305.53499 * 4 2 1 34 34 H 1.09005 * 109.58856 * 185.10304 * 4 2 1 35 35 H 1.08999 * 109.47377 * 300.27380 * 8 6 5 36 36 H 1.09001 * 109.47452 * 60.27462 * 8 6 5 37 37 H 1.07994 * 119.87779 * 359.97438 * 10 9 8 38 38 H 1.08001 * 119.74892 * 179.97438 * 11 10 9 39 39 H 1.08000 * 119.87664 * 180.02562 * 12 11 10 40 40 H 1.08002 * 120.12793 * 179.97438 * 13 12 11 41 41 H 0.96997 * 119.99856 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.58404 * 65.92846 * 23 5 4 43 43 H 1.09001 * 109.58317 * 186.35724 * 23 5 4 44 44 H 1.09000 * 109.63794 * 294.87082 * 24 23 5 45 45 H 1.09003 * 109.45910 * 174.73942 * 24 23 5 46 46 H 0.96701 * 117.00006 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 1.2498 5 7 1.6517 -2.1378 1.1703 6 6 0.9749 -2.7213 2.1792 7 8 0.6821 -2.0783 3.1650 8 6 0.5768 -4.1714 2.0800 9 6 -0.1689 -4.5741 3.3261 10 6 0.5013 -5.1704 4.3699 11 6 -0.1821 -5.5413 5.5175 12 6 -1.5460 -5.3174 5.6278 13 6 -2.2366 -4.7236 4.5964 14 6 -1.5519 -4.3365 3.4293 15 6 -2.2497 -3.7188 2.3659 16 1 -1.7265 -3.0639 1.6850 17 6 -3.6184 -3.9562 2.1958 18 7 -4.1860 -4.9702 2.7967 19 14 -4.6345 -2.8253 1.1105 20 1 -4.7253 -3.4003 -0.2557 21 1 -5.9987 -2.6865 1.6806 22 1 -3.9876 -1.4904 1.0438 23 6 2.0191 -2.9055 -0.0273 24 6 1.5031 -2.1562 -1.2653 25 6 2.0409 -0.7235 -1.2481 26 1 3.1306 -0.7448 -1.2350 27 6 1.5677 0.0048 -2.4796 28 8 0.8918 1.0004 -2.3704 29 8 1.8978 -0.4518 -3.6978 30 1 -0.3633 0.5128 0.8905 31 1 -0.3633 0.5147 -0.8895 32 1 -0.3633 -1.0278 -0.0005 33 1 1.6007 -0.2724 2.1390 34 1 3.1275 -0.6458 1.2983 35 1 -0.0652 -4.3133 1.2106 36 1 1.4702 -4.7872 1.9763 37 1 1.5635 -5.3500 4.2946 38 1 0.3517 -6.0091 6.3315 39 1 -2.0683 -5.6100 6.5266 40 1 -3.2990 -4.5505 4.6842 41 1 -5.1346 -5.1349 2.6784 42 1 3.1034 -3.0022 -0.0809 43 1 1.5637 -3.8947 0.0189 44 1 0.4134 -2.1359 -1.2533 45 1 1.8477 -2.6634 -2.1665 46 1 1.5714 0.0491 -4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599918981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:43 Heat of formation + Delta-G solvation = -134.236355 kcal Electronic energy + Delta-G solvation = -29433.205147 eV Core-core repulsion = 25479.093788 eV Total energy + Delta-G solvation = -3954.111359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93430 -40.85116 -39.39649 -38.29148 -37.07434 -35.49720 -34.63174 -33.37088 -32.63999 -31.32652 -29.01517 -28.37746 -27.24358 -26.35637 -24.00088 -23.22102 -22.80634 -21.98564 -20.59377 -19.44584 -19.02998 -18.99520 -18.21933 -17.35465 -17.33118 -16.77251 -16.57198 -16.41186 -16.14347 -15.73374 -15.35663 -15.28845 -14.84586 -14.47358 -14.40282 -14.37715 -14.01854 -13.78300 -13.51555 -13.37964 -12.99812 -12.90846 -12.81049 -12.77103 -12.68171 -12.62993 -12.49800 -12.39513 -12.15309 -12.03957 -11.58776 -11.57701 -11.30865 -11.27309 -11.17129 -11.02669 -10.60891 -9.51566 -9.20722 -9.13572 -8.60046 -6.28271 0.99393 1.14619 1.22701 1.31856 1.42699 1.50198 1.85771 2.10681 2.16860 2.25701 2.78369 3.45984 3.64267 3.73145 3.93663 3.97967 4.09286 4.21504 4.32347 4.36128 4.42805 4.50031 4.56256 4.62656 4.70499 4.71706 4.74495 4.77081 4.82528 4.85764 4.91118 5.07060 5.07676 5.14480 5.17018 5.21111 5.35838 5.38671 5.56608 5.69027 5.73736 5.79324 6.05406 6.18391 6.23343 6.43443 6.53735 6.75606 7.00379 7.03758 7.13022 7.44620 8.36278 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.004309 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.573978 B = 6496.133937 C = 7977.222810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.096 0.904 4 C 0.118 3.882 5 N -0.616 5.616 6 C 0.518 3.482 7 O -0.577 6.577 8 C -0.066 4.066 9 C -0.185 4.185 10 C -0.091 4.091 11 C -0.242 4.242 12 C -0.119 4.119 13 C -0.195 4.195 14 C 0.096 3.904 15 C -0.477 4.477 16 H 0.067 0.933 17 C 0.040 3.960 18 N -0.825 5.825 19 Si 0.960 3.040 20 H -0.254 1.254 21 H -0.268 1.268 22 H -0.272 1.272 23 C 0.104 3.896 24 C -0.127 4.127 25 C -0.069 4.069 26 H 0.147 0.853 27 C 0.487 3.513 28 O -0.546 6.546 29 O -0.508 6.508 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.117 0.883 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.719 4.766 -14.264 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.114 0.886 4 C -0.005 4.005 5 N -0.351 5.351 6 C 0.308 3.692 7 O -0.455 6.455 8 C -0.106 4.106 9 C -0.187 4.187 10 C -0.109 4.109 11 C -0.261 4.261 12 C -0.137 4.137 13 C -0.214 4.214 14 C 0.094 3.906 15 C -0.507 4.507 16 H 0.086 0.914 17 C -0.174 4.174 18 N -0.452 5.452 19 Si 0.782 3.218 20 H -0.178 1.178 21 H -0.192 1.192 22 H -0.196 1.196 23 C -0.017 4.017 24 C -0.165 4.165 25 C -0.088 4.088 26 H 0.165 0.835 27 C 0.331 3.669 28 O -0.437 6.437 29 O -0.321 6.321 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.073 0.927 45 H 0.136 0.864 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 14.296 5.012 -13.375 20.208 hybrid contribution -1.573 0.967 -0.462 1.903 sum 12.723 5.979 -13.837 19.725 Atomic orbital electron populations 1.21972 0.96440 1.01007 1.01567 1.21295 0.95437 1.00030 0.93280 0.88621 1.21628 1.00671 0.80701 0.97472 1.48223 1.56588 1.11369 1.18873 1.21134 0.75920 0.90154 0.81978 1.90654 1.55177 1.66217 1.33492 1.20294 1.00602 0.91779 0.97892 1.19582 0.94162 1.07818 0.97156 1.20740 0.98353 0.98430 0.93402 1.20725 0.94284 1.11298 0.99762 1.20941 0.95098 0.99910 0.97743 1.21303 0.99335 1.06251 0.94544 1.17712 0.91792 0.89130 0.91940 1.19542 0.93933 1.25482 1.11786 0.91438 1.26549 0.99030 0.95136 0.96725 1.69873 1.13370 1.24335 1.37575 0.85518 0.77845 0.79180 0.79230 1.17849 1.19206 1.19621 1.22131 1.02443 0.95374 0.81763 1.22066 1.01130 0.92968 1.00313 1.21100 1.04458 0.95448 0.87751 0.83540 1.23654 0.75661 0.81997 0.85547 1.90693 1.37610 1.27748 1.87624 1.84486 1.72513 1.58293 1.16805 0.94703 0.91449 0.94034 0.91756 0.88181 0.88787 0.86799 0.86373 0.86681 0.87819 0.88689 0.90429 0.87220 0.88393 0.92746 0.86433 0.71291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 8.40 71.98 0.60 -4.01 16 2 C -0.08 -1.77 2.36 -10.72 -0.03 -1.80 16 3 H 0.10 1.94 8.07 -2.39 -0.02 1.92 16 4 C 0.12 2.83 5.82 86.36 0.50 3.33 16 5 N -0.62 -16.42 2.40 -818.07 -1.97 -18.39 16 6 C 0.52 19.64 7.31 87.66 0.64 20.28 16 7 O -0.58 -28.15 15.45 -3.04 -0.05 -28.20 16 8 C -0.07 -2.47 3.52 29.10 0.10 -2.37 16 9 C -0.19 -8.88 4.43 -19.40 -0.09 -8.97 16 10 C -0.09 -4.08 9.66 22.22 0.21 -3.86 16 11 C -0.24 -11.03 10.05 22.46 0.23 -10.81 16 12 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 13 C -0.19 -10.93 8.69 22.73 0.20 -10.73 16 14 C 0.10 5.33 5.56 -21.29 -0.12 5.22 16 15 C -0.48 -26.14 8.14 23.46 0.19 -25.95 16 16 H 0.07 3.64 6.67 -2.91 -0.02 3.62 16 17 C 0.04 2.09 5.16 85.26 0.44 2.53 16 18 N -0.82 -44.36 10.96 21.83 0.24 -44.12 16 19 Si 0.96 40.44 29.59 68.60 2.03 42.47 16 20 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.10 1.75 6.37 86.51 0.55 2.30 16 24 C -0.13 -1.98 4.97 30.82 0.15 -1.83 16 25 C -0.07 -1.06 2.37 -11.51 -0.03 -1.09 16 26 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 27 C 0.49 8.72 7.34 71.24 0.52 9.25 16 28 O -0.55 -13.92 14.51 21.96 0.32 -13.60 16 29 O -0.51 -5.93 13.30 -51.35 -0.68 -6.61 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 2.07 5.65 -2.39 -0.01 2.06 16 32 H 0.04 1.38 5.97 -2.38 -0.01 1.37 16 33 H 0.06 2.02 7.01 -2.39 -0.02 2.01 16 34 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.09 3.52 6.64 -2.39 -0.02 3.51 16 36 H 0.11 3.27 7.84 -2.39 -0.02 3.25 16 37 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.10 5.60 6.20 -2.91 -0.02 5.58 16 41 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 1.66 5.93 -2.39 -0.01 1.64 16 44 H 0.05 1.18 6.33 -2.39 -0.02 1.17 16 45 H 0.12 1.20 8.08 -2.39 -0.02 1.18 16 46 H 0.43 1.89 9.10 -74.06 -0.67 1.22 16 Total: -1.00 -77.45 366.24 4.55 -72.90 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.35 Total: 29.77 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 4.31 Total: -34.22 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -1.73 Total: -62.51 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.41 Total: -48.42 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -77.45 4.55 -72.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599918981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.333 kcal (2) G-P(sol) polarization free energy of solvation -77.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds