Wall clock time and date at job start Tue Mar 31 2020 17:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.52205 * 2 1 4 4 C 1.53191 * 109.50145 * 239.91990 * 2 1 3 5 5 N 1.46923 * 108.77807 * 185.41635 * 4 2 1 6 6 C 1.34775 * 120.62929 * 233.58836 * 5 4 2 7 7 O 1.21282 * 120.00258 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99997 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47180 * 59.99240 * 8 6 5 10 10 C 1.50698 * 109.47068 * 299.99719 * 8 6 5 11 11 H 1.08003 * 119.99876 * 334.88620 * 10 8 6 12 12 C 1.37879 * 120.00344 * 155.16540 * 10 8 6 13 13 N 1.31521 * 119.99567 * 354.53894 * 12 10 8 14 14 Si 1.86798 * 120.00397 * 174.54076 * 12 10 8 15 15 H 1.48496 * 109.46983 * 59.99640 * 14 12 10 16 16 H 1.48500 * 109.47109 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46808 * 300.00098 * 14 12 10 18 18 C 1.50703 * 109.47246 * 179.97438 * 8 6 5 19 19 C 1.38232 * 119.99872 * 66.22952 * 18 8 6 20 20 C 1.38234 * 119.99739 * 179.79080 * 19 18 8 21 21 C 1.38239 * 119.99953 * 0.46051 * 20 19 18 22 22 C 1.38230 * 120.00032 * 359.77291 * 21 20 19 23 23 C 1.38233 * 119.99718 * 246.50445 * 18 8 6 24 24 C 1.46928 * 118.74010 * 53.85635 * 5 4 2 25 25 C 1.53633 * 108.54165 * 306.09612 * 24 5 4 26 26 C 1.53036 * 109.24208 * 54.85626 * 25 24 5 27 27 H 1.09000 * 109.46004 * 58.52823 * 26 25 24 28 28 C 1.50694 * 109.45037 * 178.49631 * 26 25 24 29 29 O 1.20828 * 120.00365 * 120.05976 * 28 26 25 30 30 O 1.34229 * 120.00033 * 300.06227 * 28 26 25 31 31 H 1.08990 * 109.47212 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47218 * 300.08656 * 1 2 3 33 33 H 1.09002 * 109.46705 * 60.08130 * 1 2 3 34 34 H 1.08997 * 109.58652 * 65.62664 * 4 2 1 35 35 H 1.09001 * 109.58669 * 305.20112 * 4 2 1 36 36 H 0.96996 * 119.99681 * 179.97438 * 13 12 10 37 37 H 1.07997 * 119.99856 * 359.97438 * 19 18 8 38 38 H 1.08003 * 120.00058 * 180.25942 * 20 19 18 39 39 H 1.08001 * 119.99987 * 179.79612 * 21 20 19 40 40 H 1.07998 * 120.00350 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.00387 * 359.97438 * 23 18 8 42 42 H 1.08990 * 109.58580 * 65.92849 * 24 5 4 43 43 H 1.09006 * 109.58894 * 186.35663 * 24 5 4 44 44 H 1.08996 * 109.63383 * 294.86441 * 25 24 5 45 45 H 1.08999 * 109.45305 * 174.73935 * 25 24 5 46 46 H 0.96697 * 117.00377 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2812 -0.3864 -2.1781 7 8 3.7732 0.1043 -3.1641 8 6 5.7807 -0.5009 -2.0808 9 1 6.0589 -1.5495 -1.9750 10 6 6.2667 0.2712 -0.8814 11 1 5.6830 1.0942 -0.4962 12 6 7.4593 -0.0694 -0.2791 13 7 8.1195 -1.1329 -0.6827 14 14 8.1374 0.9795 1.1099 15 1 7.1639 1.0057 2.2309 16 1 9.4217 0.4038 1.5834 17 1 8.3651 2.3627 0.6197 18 6 6.4096 0.0617 -3.3295 19 6 6.3051 1.4116 -3.6080 20 6 6.8857 1.9284 -4.7512 21 6 7.5626 1.0935 -5.6206 22 6 7.6629 -0.2572 -5.3445 23 6 7.0860 -0.7732 -4.1991 24 6 4.1051 -1.4318 0.0285 25 6 3.5708 -0.6949 1.2661 26 6 2.0408 -0.7230 1.2484 27 1 1.6967 -1.7572 1.2353 28 6 1.5119 -0.0335 2.4796 29 8 0.7998 0.9365 2.3700 30 8 1.8320 -0.4968 3.6980 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5151 0.8891 33 1 -0.3633 0.5126 -0.8907 34 1 1.7639 -0.1579 -2.1388 35 1 1.6053 -1.7216 -1.2980 36 1 8.9587 -1.3724 -0.2592 37 1 5.7725 2.0630 -2.9310 38 1 6.8077 2.9838 -4.9667 39 1 8.0133 1.4967 -6.5154 40 1 8.1920 -0.9094 -6.0235 41 1 7.1642 -1.8286 -3.9835 42 1 3.8339 -2.4860 0.0821 43 1 5.1897 -1.3332 -0.0173 44 1 3.9158 0.3389 1.2542 45 1 3.9333 -1.1891 2.1675 46 1 1.4693 -0.0212 4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603439857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:48 Heat of formation + Delta-G solvation = -110.729803 kcal Electronic energy + Delta-G solvation = -29632.869791 eV Core-core repulsion = 25679.777753 eV Total energy + Delta-G solvation = -3953.092038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73542 -39.46208 -38.10056 -36.86989 -36.06689 -34.01825 -32.97472 -31.74324 -31.05404 -29.91384 -27.83196 -26.82743 -25.72416 -23.75257 -22.25852 -22.07084 -21.56163 -20.78217 -19.76093 -18.30608 -18.04187 -16.96946 -16.70214 -15.95359 -15.94140 -15.57018 -15.26486 -14.55318 -14.39395 -14.21728 -13.99935 -13.77664 -13.66366 -13.22308 -12.89158 -12.69283 -12.43682 -12.36255 -12.30266 -11.95730 -11.72110 -11.68497 -11.55119 -11.47143 -11.25376 -11.05446 -11.02486 -10.78502 -10.61285 -10.39076 -10.37303 -10.23965 -10.06234 -9.94640 -9.48236 -8.78070 -8.57062 -7.99631 -7.91798 -7.59587 -6.32763 -4.36644 2.19236 2.40121 2.42507 3.02447 3.16824 3.23629 3.26282 3.61852 3.80470 4.23564 4.58615 4.82524 4.85781 5.02911 5.04274 5.21478 5.38706 5.48888 5.60873 5.62641 5.73803 5.77936 5.79587 5.83039 5.90085 5.97030 6.03089 6.07358 6.22006 6.23934 6.34350 6.37903 6.50621 6.51733 6.60199 6.61751 6.69485 6.86336 6.97646 7.15989 7.28603 7.39114 7.46938 7.57884 7.73380 7.88673 7.95670 8.04432 8.22015 8.63528 9.15809 9.25564 10.74797 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.004581 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.083891 B = 6110.974872 C = 7534.794971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.087 4.087 3 H 0.082 0.918 4 C 0.117 3.883 5 N -0.612 5.612 6 C 0.530 3.470 7 O -0.565 6.565 8 C 0.054 3.946 9 H 0.085 0.915 10 C -0.513 4.513 11 H 0.063 0.937 12 C 0.077 3.923 13 N -0.873 5.873 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.009 4.009 19 C -0.083 4.083 20 C -0.136 4.136 21 C -0.148 4.148 22 C -0.133 4.133 23 C -0.115 4.115 24 C 0.100 3.900 25 C -0.121 4.121 26 C -0.075 4.075 27 H 0.106 0.894 28 C 0.484 3.516 29 O -0.514 6.514 30 O -0.516 6.516 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.269 0.731 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.052 0.948 43 H 0.144 0.856 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 -2.374 4.208 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.107 4.107 3 H 0.101 0.899 4 C -0.006 4.006 5 N -0.345 5.345 6 C 0.322 3.678 7 O -0.443 6.443 8 C 0.033 3.967 9 H 0.102 0.898 10 C -0.550 4.550 11 H 0.081 0.919 12 C -0.129 4.129 13 N -0.508 5.508 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.010 4.010 19 C -0.102 4.102 20 C -0.154 4.154 21 C -0.167 4.167 22 C -0.151 4.151 23 C -0.134 4.134 24 C -0.022 4.022 25 C -0.159 4.159 26 C -0.094 4.094 27 H 0.124 0.876 28 C 0.327 3.673 29 O -0.402 6.402 30 O -0.327 6.327 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.070 0.930 43 H 0.161 0.839 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -8.451 -2.190 3.336 9.346 hybrid contribution 0.254 0.912 1.439 1.722 sum -8.197 -1.278 4.775 9.572 Atomic orbital electron populations 1.22061 0.94317 1.01661 1.03641 1.21387 0.96140 1.00481 0.92680 0.89926 1.21501 0.81567 0.99765 0.97795 1.48006 1.05011 1.62132 1.19374 1.21599 0.90803 0.74793 0.80602 1.90579 1.76383 1.45618 1.31750 1.18115 0.85483 1.00536 0.92600 0.89757 1.20577 1.06587 1.16716 1.11166 0.91920 1.24912 0.96363 0.94662 0.96949 1.69887 1.15795 1.23696 1.41465 0.86650 0.78587 0.81038 0.81950 1.19804 1.21035 1.19942 1.19989 0.94411 0.93112 0.93468 1.20816 0.98057 0.95482 0.95807 1.20950 0.99945 0.98637 0.95841 1.20790 1.02189 0.94065 0.99619 1.20891 1.01255 0.95164 0.97801 1.20965 0.98995 0.99379 0.94024 1.22211 1.03746 0.94189 0.82053 1.21972 0.90444 1.03487 1.00023 1.21216 0.98646 1.00650 0.88908 0.87568 1.23717 0.76767 0.82060 0.84710 1.90633 1.35711 1.26831 1.87019 1.84574 1.71592 1.59630 1.16900 0.93192 0.90113 0.92402 0.88949 0.92296 0.92157 0.87161 0.87678 0.87788 0.87633 0.87087 0.92957 0.83862 0.90457 0.89947 0.73651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.86 37.16 0.33 -1.61 16 2 C -0.09 -1.22 2.06 -90.50 -0.19 -1.40 16 3 H 0.08 1.34 8.13 -51.92 -0.42 0.92 16 4 C 0.12 1.79 5.71 -3.71 -0.02 1.77 16 5 N -0.61 -11.01 2.97 -172.50 -0.51 -11.52 16 6 C 0.53 11.49 6.98 -10.98 -0.08 11.41 16 7 O -0.56 -13.52 14.84 5.56 0.08 -13.44 16 8 C 0.05 1.22 1.51 -94.07 -0.14 1.08 16 9 H 0.08 2.01 7.08 -51.93 -0.37 1.64 16 10 C -0.51 -11.98 5.12 -34.44 -0.18 -12.15 16 11 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 12 C 0.08 1.83 5.24 -17.82 -0.09 1.73 16 13 N -0.87 -21.68 12.93 55.43 0.72 -20.97 16 14 Si 0.89 19.14 29.54 -169.99 -5.02 14.11 16 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C -0.01 -0.20 4.30 -104.62 -0.45 -0.65 16 19 C -0.08 -1.88 8.32 -39.58 -0.33 -2.20 16 20 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 21 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 22 C -0.13 -2.57 10.05 -39.58 -0.40 -2.97 16 23 C -0.12 -2.50 9.67 -39.58 -0.38 -2.88 16 24 C 0.10 1.63 5.91 -3.48 -0.02 1.61 16 25 C -0.12 -1.74 5.31 -26.38 -0.14 -1.88 16 26 C -0.08 -0.95 2.14 -91.73 -0.20 -1.15 16 27 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 28 C 0.48 6.18 7.33 36.00 0.26 6.45 16 29 O -0.51 -7.72 14.34 -18.75 -0.27 -7.99 16 30 O -0.52 -5.27 13.30 -39.25 -0.52 -5.80 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.07 5.41 -51.93 -0.28 0.79 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.56 7.01 -51.93 -0.36 1.20 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.11 2.52 7.89 -52.49 -0.41 2.10 16 38 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.11 2.31 7.96 -52.49 -0.42 1.89 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.14 2.77 4.41 -51.93 -0.23 2.54 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 46 H 0.41 2.41 9.10 45.56 0.41 2.82 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -28.97 372.02 -8.58 -37.55 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.85 Total: 11.57 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.81 Total: -9.13 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.20 Total: -32.49 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.71 Total: -27.23 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.97 -8.58 -37.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603439857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.180 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds