Wall clock time and date at job start Tue Mar 31 2020 17:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.52205 * 2 1 4 4 C 1.53191 * 109.50145 * 239.91990 * 2 1 3 5 5 N 1.46923 * 108.77807 * 185.41635 * 4 2 1 6 6 C 1.34775 * 120.62929 * 233.58836 * 5 4 2 7 7 O 1.21282 * 120.00258 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99997 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47180 * 59.99240 * 8 6 5 10 10 C 1.50698 * 109.47068 * 299.99719 * 8 6 5 11 11 H 1.08003 * 119.99876 * 334.88620 * 10 8 6 12 12 C 1.37879 * 120.00344 * 155.16540 * 10 8 6 13 13 N 1.31521 * 119.99567 * 354.53894 * 12 10 8 14 14 Si 1.86798 * 120.00397 * 174.54076 * 12 10 8 15 15 H 1.48496 * 109.46983 * 59.99640 * 14 12 10 16 16 H 1.48500 * 109.47109 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46808 * 300.00098 * 14 12 10 18 18 C 1.50703 * 109.47246 * 179.97438 * 8 6 5 19 19 C 1.38232 * 119.99872 * 66.22952 * 18 8 6 20 20 C 1.38234 * 119.99739 * 179.79080 * 19 18 8 21 21 C 1.38239 * 119.99953 * 0.46051 * 20 19 18 22 22 C 1.38230 * 120.00032 * 359.77291 * 21 20 19 23 23 C 1.38233 * 119.99718 * 246.50445 * 18 8 6 24 24 C 1.46928 * 118.74010 * 53.85635 * 5 4 2 25 25 C 1.53633 * 108.54165 * 306.09612 * 24 5 4 26 26 C 1.53036 * 109.24208 * 54.85626 * 25 24 5 27 27 H 1.09000 * 109.46004 * 58.52823 * 26 25 24 28 28 C 1.50694 * 109.45037 * 178.49631 * 26 25 24 29 29 O 1.20828 * 120.00365 * 120.05976 * 28 26 25 30 30 O 1.34229 * 120.00033 * 300.06227 * 28 26 25 31 31 H 1.08990 * 109.47212 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47218 * 300.08656 * 1 2 3 33 33 H 1.09002 * 109.46705 * 60.08130 * 1 2 3 34 34 H 1.08997 * 109.58652 * 65.62664 * 4 2 1 35 35 H 1.09001 * 109.58669 * 305.20112 * 4 2 1 36 36 H 0.96996 * 119.99681 * 179.97438 * 13 12 10 37 37 H 1.07997 * 119.99856 * 359.97438 * 19 18 8 38 38 H 1.08003 * 120.00058 * 180.25942 * 20 19 18 39 39 H 1.08001 * 119.99987 * 179.79612 * 21 20 19 40 40 H 1.07998 * 120.00350 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.00387 * 359.97438 * 23 18 8 42 42 H 1.08990 * 109.58580 * 65.92849 * 24 5 4 43 43 H 1.09006 * 109.58894 * 186.35663 * 24 5 4 44 44 H 1.08996 * 109.63383 * 294.86441 * 25 24 5 45 45 H 1.08999 * 109.45305 * 174.73935 * 25 24 5 46 46 H 0.96697 * 117.00377 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2812 -0.3864 -2.1781 7 8 3.7732 0.1043 -3.1641 8 6 5.7807 -0.5009 -2.0808 9 1 6.0589 -1.5495 -1.9750 10 6 6.2667 0.2712 -0.8814 11 1 5.6830 1.0942 -0.4962 12 6 7.4593 -0.0694 -0.2791 13 7 8.1195 -1.1329 -0.6827 14 14 8.1374 0.9795 1.1099 15 1 7.1639 1.0057 2.2309 16 1 9.4217 0.4038 1.5834 17 1 8.3651 2.3627 0.6197 18 6 6.4096 0.0617 -3.3295 19 6 6.3051 1.4116 -3.6080 20 6 6.8857 1.9284 -4.7512 21 6 7.5626 1.0935 -5.6206 22 6 7.6629 -0.2572 -5.3445 23 6 7.0860 -0.7732 -4.1991 24 6 4.1051 -1.4318 0.0285 25 6 3.5708 -0.6949 1.2661 26 6 2.0408 -0.7230 1.2484 27 1 1.6967 -1.7572 1.2353 28 6 1.5119 -0.0335 2.4796 29 8 0.7998 0.9365 2.3700 30 8 1.8320 -0.4968 3.6980 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5151 0.8891 33 1 -0.3633 0.5126 -0.8907 34 1 1.7639 -0.1579 -2.1388 35 1 1.6053 -1.7216 -1.2980 36 1 8.9587 -1.3724 -0.2592 37 1 5.7725 2.0630 -2.9310 38 1 6.8077 2.9838 -4.9667 39 1 8.0133 1.4967 -6.5154 40 1 8.1920 -0.9094 -6.0235 41 1 7.1642 -1.8286 -3.9835 42 1 3.8339 -2.4860 0.0821 43 1 5.1897 -1.3332 -0.0173 44 1 3.9158 0.3389 1.2542 45 1 3.9333 -1.1891 2.1675 46 1 1.4693 -0.0212 4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603439857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:47 Heat of formation + Delta-G solvation = -126.519196 kcal Electronic energy + Delta-G solvation = -29633.554471 eV Core-core repulsion = 25679.777753 eV Total energy + Delta-G solvation = -3953.776718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85150 -40.93703 -39.58429 -38.23978 -37.10043 -35.72767 -34.38947 -33.00635 -32.73853 -31.51700 -29.42569 -28.00488 -27.16143 -25.43913 -23.53512 -23.21403 -23.14689 -22.27360 -20.96538 -19.83601 -19.01062 -18.63787 -17.98402 -17.53165 -17.39703 -16.87650 -16.60087 -16.21543 -15.89452 -15.61220 -15.43115 -15.24986 -14.78334 -14.48233 -14.34464 -14.14522 -13.98419 -13.93094 -13.45614 -13.32911 -13.21027 -13.11682 -12.86288 -12.79945 -12.75361 -12.70705 -12.32767 -12.17578 -11.96087 -11.92154 -11.76834 -11.63340 -11.43110 -11.25063 -11.17539 -10.61870 -10.30602 -9.54382 -9.44485 -9.23546 -8.17810 -6.24441 0.77607 0.82347 1.19610 1.42330 1.46826 1.51053 1.91367 2.12826 2.35678 2.44064 3.11260 3.26986 3.48929 3.73906 3.93763 4.04728 4.18848 4.26180 4.30729 4.35521 4.41731 4.43662 4.50702 4.55130 4.58840 4.71066 4.75456 4.80798 4.88971 4.94856 4.98315 5.10658 5.15257 5.18967 5.27146 5.31272 5.34985 5.38778 5.46430 5.67614 5.72268 5.79807 5.82421 5.91423 5.97053 6.26238 6.41576 6.62614 6.75712 7.03004 7.37477 7.50496 8.89567 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.004581 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.083891 B = 6110.974872 C = 7534.794971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.049 0.951 4 C 0.117 3.883 5 N -0.608 5.608 6 C 0.524 3.476 7 O -0.595 6.595 8 C 0.059 3.941 9 H 0.067 0.933 10 C -0.504 4.504 11 H 0.048 0.952 12 C 0.046 3.954 13 N -0.896 5.896 14 Si 0.935 3.065 15 H -0.260 1.260 16 H -0.283 1.283 17 H -0.286 1.286 18 C -0.035 4.035 19 C -0.111 4.111 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.130 4.130 23 C -0.138 4.138 24 C 0.099 3.901 25 C -0.113 4.113 26 C -0.071 4.071 27 H 0.138 0.862 28 C 0.491 3.509 29 O -0.541 6.541 30 O -0.508 6.508 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.268 0.732 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.048 0.952 45 H 0.102 0.898 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 -3.137 4.581 10.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 H 0.068 0.932 4 C -0.005 4.005 5 N -0.339 5.339 6 C 0.315 3.685 7 O -0.477 6.477 8 C 0.038 3.962 9 H 0.084 0.916 10 C -0.541 4.541 11 H 0.066 0.934 12 C -0.157 4.157 13 N -0.532 5.532 14 Si 0.761 3.239 15 H -0.185 1.185 16 H -0.208 1.208 17 H -0.212 1.212 18 C -0.036 4.036 19 C -0.129 4.129 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.023 4.023 25 C -0.151 4.151 26 C -0.090 4.090 27 H 0.156 0.844 28 C 0.335 3.665 29 O -0.431 6.431 30 O -0.322 6.322 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.130 0.870 44 H 0.067 0.933 45 H 0.120 0.880 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -8.922 -2.969 3.773 10.132 hybrid contribution 0.381 1.149 1.313 1.786 sum -8.541 -1.821 5.087 10.107 Atomic orbital electron populations 1.21982 0.92512 1.03139 1.03222 1.21255 0.97470 0.98578 0.92738 0.93209 1.21668 0.79730 1.01359 0.97777 1.48050 1.06192 1.60833 1.18855 1.21465 0.90800 0.75050 0.81152 1.90542 1.76728 1.47299 1.33159 1.17972 0.86403 0.99183 0.92623 0.91562 1.20486 1.06408 1.15923 1.11326 0.93407 1.25349 0.96505 0.95341 0.98482 1.69966 1.16026 1.24735 1.42494 0.85955 0.78347 0.79071 0.80504 1.18478 1.20799 1.21204 1.20132 0.95462 0.93777 0.94225 1.20828 0.99640 0.95265 0.97180 1.21304 0.99077 1.00351 0.94888 1.21249 1.00984 0.93612 1.00384 1.21302 1.00209 0.96190 0.97131 1.21128 0.99937 0.99344 0.95205 1.22222 1.02019 0.96021 0.82047 1.21848 0.91859 1.01657 0.99738 1.21152 0.97081 1.02206 0.88550 0.84415 1.23533 0.76181 0.81410 0.85370 1.90641 1.37079 1.27891 1.87505 1.84513 1.71247 1.59575 1.16834 0.90705 0.90936 0.92436 0.90962 0.89135 0.92306 0.89070 0.85030 0.83714 0.84281 0.87315 0.89906 0.86992 0.93275 0.87963 0.71266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.86 71.98 0.64 -2.79 16 2 C -0.08 -2.19 2.06 -10.72 -0.02 -2.21 16 3 H 0.05 1.67 8.13 -2.38 -0.02 1.65 16 4 C 0.12 3.52 5.71 86.36 0.49 4.01 16 5 N -0.61 -22.20 2.97 -818.05 -2.43 -24.62 16 6 C 0.52 23.72 6.98 87.66 0.61 24.33 16 7 O -0.60 -29.86 14.84 -3.04 -0.05 -29.90 16 8 C 0.06 2.82 1.51 -13.03 -0.02 2.80 16 9 H 0.07 3.33 7.08 -2.39 -0.02 3.32 16 10 C -0.50 -24.54 5.12 25.60 0.13 -24.41 16 11 H 0.05 2.42 7.81 -2.91 -0.02 2.40 16 12 C 0.05 2.25 5.24 84.65 0.44 2.70 16 13 N -0.90 -45.53 12.93 21.45 0.28 -45.25 16 14 Si 0.94 39.75 29.54 68.60 2.03 41.77 16 15 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 18 C -0.03 -1.67 4.30 -19.87 -0.09 -1.76 16 19 C -0.11 -5.14 8.32 22.27 0.19 -4.96 16 20 C -0.14 -5.40 10.05 22.27 0.22 -5.17 16 21 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 22 C -0.13 -4.84 10.05 22.27 0.22 -4.62 16 23 C -0.14 -6.06 9.67 22.27 0.22 -5.84 16 24 C 0.10 3.18 5.91 86.51 0.51 3.69 16 25 C -0.11 -3.13 5.31 30.82 0.16 -2.97 16 26 C -0.07 -1.66 2.14 -11.52 -0.02 -1.69 16 27 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 28 C 0.49 11.55 7.33 71.23 0.52 12.08 16 29 O -0.54 -15.65 14.34 21.96 0.31 -15.34 16 30 O -0.51 -8.93 13.30 -51.40 -0.68 -9.61 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.83 5.41 -2.39 -0.01 1.81 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 2.49 7.01 -2.39 -0.02 2.47 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 37 H 0.09 4.43 7.89 -2.91 -0.02 4.41 16 38 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 40 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.11 4.67 7.96 -2.91 -0.02 4.64 16 42 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.11 4.44 4.41 -2.38 -0.01 4.43 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.10 2.44 8.08 -2.39 -0.02 2.42 16 46 H 0.43 3.83 9.10 -74.06 -0.67 3.16 16 Total: -1.00 -65.39 372.02 4.22 -61.17 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.32 Total: 33.45 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 4.43 Total: -11.66 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -2.15 Total: -69.88 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -0.41 Total: -54.86 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.77 kcal Total: -65.39 4.22 -61.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603439857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.353 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds